Wall clock time and date at job start Fri Apr 10 2020 22:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86792 * 120.00068 * 2 1 4 4 H 1.48502 * 109.47152 * 269.99876 * 3 2 1 5 5 H 1.48502 * 109.47264 * 29.99705 * 3 2 1 6 6 H 1.48503 * 109.47185 * 149.99994 * 3 2 1 7 7 C 1.38809 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00327 * 0.02562 * 7 2 1 9 9 N 1.36941 * 120.00069 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00174 * 180.02562 * 9 7 2 11 11 H 1.09005 * 110.78052 * 323.21043 * 10 9 7 12 12 C 1.55150 * 110.72042 * 199.97678 * 10 9 7 13 13 C 1.55131 * 101.48826 * 205.96806 * 12 10 9 14 14 N 1.47431 * 104.71947 * 37.29249 * 13 12 10 15 15 C 1.34770 * 125.64540 * 155.81916 * 14 13 12 16 16 O 1.21551 * 120.00064 * 185.40346 * 15 14 13 17 17 C 1.47879 * 120.00490 * 5.40173 * 15 14 13 18 18 C 1.40579 * 119.70762 * 24.97199 * 17 15 14 19 19 C 1.35813 * 120.74066 * 180.30153 * 18 17 15 20 20 C 1.40550 * 119.98237 * 359.70593 * 19 18 17 21 21 C 1.40818 * 121.14155 * 180.02562 * 20 19 18 22 22 C 1.36546 * 118.19978 * 179.97438 * 21 20 19 23 23 C 1.39419 * 119.94210 * 0.02562 * 22 21 20 24 24 N 1.31017 * 121.71039 * 359.97438 * 23 22 21 25 25 C 1.33746 * 121.34943 * 0.04154 * 24 23 22 26 26 C 1.38405 * 119.71506 * 204.70012 * 17 15 14 27 27 C 1.47019 * 108.70158 * 335.55332 * 14 13 12 28 28 H 0.97004 * 120.00134 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99653 * 0.02562 * 9 7 2 30 30 H 1.09003 * 111.00545 * 324.20467 * 12 10 9 31 31 H 1.09000 * 111.01294 * 88.01945 * 12 10 9 32 32 H 1.08993 * 110.49822 * 278.45433 * 13 12 10 33 33 H 1.08997 * 110.34433 * 156.05172 * 13 12 10 34 34 H 1.08005 * 119.63191 * 0.02562 * 18 17 15 35 35 H 1.08001 * 120.01275 * 179.72404 * 19 18 17 36 36 H 1.08003 * 120.90033 * 359.96361 * 21 20 19 37 37 H 1.08000 * 120.02869 * 179.97438 * 22 21 20 38 38 H 1.07999 * 119.14305 * 180.02562 * 23 22 21 39 39 H 1.08005 * 120.22574 * 0.02562 * 26 17 15 40 40 H 1.08999 * 109.87828 * 120.70634 * 27 14 13 41 41 H 1.08994 * 109.88238 * 241.86813 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5984 -3.2141 0.6110 12 6 5.5675 -2.2646 0.4974 13 6 6.3001 -3.4439 -0.1946 14 7 5.6621 -3.5558 -1.5190 15 6 6.2248 -4.0945 -2.6188 16 8 5.6430 -4.0460 -3.6849 17 6 7.5500 -4.7444 -2.5287 18 6 7.9855 -5.2712 -1.3003 19 6 9.2012 -5.8670 -1.1923 20 6 10.0366 -5.9676 -2.3181 21 6 11.3014 -6.5809 -2.2340 22 6 12.0633 -6.6463 -3.3652 23 6 11.5820 -6.1132 -4.5602 24 7 10.4047 -5.5432 -4.6352 25 6 9.6091 -5.4461 -3.5644 26 6 8.3483 -4.8339 -3.6558 27 6 4.3083 -2.9882 -1.4396 28 1 -0.4850 0.8401 -0.0004 29 1 3.8646 -0.3622 0.0014 30 1 5.9620 -1.3050 0.1631 31 1 5.6265 -2.3522 1.5823 32 1 6.1616 -4.3646 0.3721 33 1 7.3613 -3.2198 -0.3025 34 1 7.3481 -5.1972 -0.4315 35 1 9.5258 -6.2637 -0.2417 36 1 11.6592 -6.9883 -1.3000 37 1 13.0382 -7.1099 -3.3342 38 1 12.1952 -6.1724 -5.4472 39 1 8.0064 -4.4308 -4.5977 40 1 4.2099 -2.1640 -2.1460 41 1 3.5697 -3.7588 -1.6606 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970289862.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:26 Heat of formation + Delta-G solvation = 53.917017 kcal Electronic energy + Delta-G solvation = -24410.359747 eV Core-core repulsion = 20870.005231 eV Total energy + Delta-G solvation = -3540.354516 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = -0.18 seconds Orbital eigenvalues (eV) -41.24543 -39.94171 -37.63419 -36.89255 -34.35316 -33.83349 -31.90299 -30.97173 -30.38587 -29.93244 -28.01155 -25.34896 -24.37445 -23.56233 -22.50983 -22.42348 -20.57396 -19.78674 -18.67720 -17.78463 -17.30796 -17.07817 -16.37868 -16.16162 -15.32479 -14.86494 -14.81873 -14.55147 -14.49262 -14.01729 -13.94906 -13.59270 -13.43330 -13.15713 -12.90756 -12.71279 -12.31955 -12.23384 -12.07850 -11.93731 -11.56589 -11.30182 -10.92347 -10.91330 -10.77705 -10.54973 -10.13460 -9.95019 -9.83278 -9.66530 -9.13080 -9.05477 -8.67208 -8.43211 -7.41997 -5.84647 -3.23137 -0.05522 0.31962 1.56501 2.25184 2.96374 3.14014 3.32534 3.36339 3.41874 3.78710 3.92721 4.17417 4.29495 4.40640 4.48194 4.52174 4.59441 4.71633 4.75846 4.86680 5.00653 5.08935 5.18073 5.27998 5.40262 5.48244 5.52943 5.53663 5.58752 5.71423 5.76119 5.78491 5.92973 6.00058 6.11451 6.13402 6.18512 6.35413 6.41365 6.56070 6.71998 7.53409 7.60780 7.88980 8.20274 8.33763 9.09939 9.82018 9.99363 11.32933 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.031873 B = 0.002642 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.278280 B =10594.386402 C =10817.453731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.254 4.254 8 H 0.093 0.907 9 N -0.737 5.737 10 C 0.178 3.822 11 H 0.075 0.925 12 C -0.145 4.145 13 C 0.097 3.903 14 N -0.607 5.607 15 C 0.565 3.435 16 O -0.532 6.532 17 C -0.105 4.105 18 C -0.100 4.100 19 C -0.103 4.103 20 C -0.089 4.089 21 C -0.061 4.061 22 C -0.171 4.171 23 C 0.128 3.872 24 N -0.466 5.466 25 C 0.117 3.883 26 C -0.029 4.029 27 C 0.083 3.917 28 H 0.261 0.739 29 H 0.364 0.636 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.146 0.854 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.161 0.839 39 H 0.148 0.852 40 H 0.075 0.925 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.901 -14.339 -0.444 30.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.187 4.187 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.384 4.384 8 H 0.111 0.889 9 N -0.378 5.378 10 C 0.066 3.934 11 H 0.093 0.907 12 C -0.184 4.184 13 C -0.026 4.026 14 N -0.340 5.340 15 C 0.353 3.647 16 O -0.410 6.410 17 C -0.110 4.110 18 C -0.118 4.118 19 C -0.122 4.122 20 C -0.091 4.091 21 C -0.087 4.087 22 C -0.191 4.191 23 C -0.046 4.046 24 N -0.174 5.174 25 C -0.003 4.003 26 C -0.049 4.049 27 C -0.042 4.042 28 H 0.071 0.929 29 H 0.198 0.802 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.164 0.836 35 H 0.154 0.846 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.178 0.822 39 H 0.166 0.834 40 H 0.093 0.907 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 25.892 -13.978 -1.816 29.480 hybrid contribution 0.915 0.815 0.732 1.427 sum 26.807 -13.163 -1.085 29.884 Atomic orbital electron populations 1.69700 1.05138 1.26038 1.56608 1.24689 0.95245 0.97316 1.01446 0.86563 0.79183 0.84912 0.77916 1.20936 1.21600 1.20256 1.19070 0.80264 0.94924 1.44129 0.88938 1.42713 1.04217 1.01506 1.89408 1.21177 0.90348 0.89965 0.91921 0.90688 1.23177 0.96753 0.97797 1.00669 1.22663 0.97590 0.98753 0.83617 1.48426 1.17207 1.58955 1.09461 1.17884 0.84914 0.78767 0.83098 1.90809 1.63912 1.58842 1.27442 1.19942 0.95229 1.01541 0.94284 1.21554 0.96535 0.96286 0.97424 1.20890 0.93962 0.99692 0.97644 1.18969 0.95724 0.99611 0.94839 1.21515 0.92406 0.95487 0.99278 1.21960 1.01562 1.01611 0.93942 1.23018 0.91833 0.92098 0.97628 1.68036 1.04802 1.14547 1.29983 1.18749 0.94593 0.98117 0.88877 1.21218 0.90446 0.94482 0.98705 1.23214 0.80673 0.98457 1.01854 0.92879 0.80205 0.90582 0.89581 0.90816 0.90477 0.83631 0.84611 0.84169 0.84359 0.82206 0.83406 0.90659 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.66 13.97 55.49 0.78 -27.89 16 2 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 3 Si 0.88 21.62 27.74 -169.99 -4.71 16.90 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 7 C -0.25 -6.91 10.46 -15.06 -0.16 -7.07 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.74 -16.49 4.98 -51.66 -0.26 -16.75 16 10 C 0.18 3.12 3.59 -66.10 -0.24 2.88 16 11 H 0.08 1.31 8.12 -51.93 -0.42 0.89 16 12 C -0.15 -1.89 6.71 -24.47 -0.16 -2.06 16 13 C 0.10 1.07 4.99 -2.40 -0.01 1.06 16 14 N -0.61 -9.17 3.32 -171.49 -0.57 -9.74 16 15 C 0.57 9.20 7.63 -12.32 -0.09 9.10 16 16 O -0.53 -10.77 16.89 5.32 0.09 -10.68 16 17 C -0.10 -1.36 5.66 -105.01 -0.59 -1.96 16 18 C -0.10 -0.97 7.96 -39.57 -0.31 -1.29 16 19 C -0.10 -0.84 9.74 -39.58 -0.39 -1.23 16 20 C -0.09 -0.85 5.75 -106.73 -0.61 -1.47 16 21 C -0.06 -0.41 9.88 -39.22 -0.39 -0.80 16 22 C -0.17 -1.04 10.03 -39.75 -0.40 -1.44 16 23 C 0.13 1.02 11.15 -17.46 -0.19 0.82 16 24 N -0.47 -5.42 10.34 -10.98 -0.11 -5.53 16 25 C 0.12 1.41 6.60 -84.88 -0.56 0.85 16 26 C -0.03 -0.38 9.55 -38.68 -0.37 -0.75 16 27 C 0.08 1.49 6.62 -3.07 -0.02 1.47 16 28 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 29 H 0.36 8.04 5.57 -40.82 -0.23 7.81 16 30 H 0.08 1.03 8.00 -51.93 -0.42 0.62 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.64 6.81 -51.93 -0.35 0.29 16 33 H 0.08 0.72 6.82 -51.93 -0.35 0.37 16 34 H 0.15 1.16 4.55 -52.48 -0.24 0.93 16 35 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 36 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 37 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 38 H 0.16 0.77 8.06 -52.49 -0.42 0.34 16 39 H 0.15 2.08 7.81 -52.48 -0.41 1.67 16 40 H 0.08 1.56 8.03 -51.93 -0.42 1.14 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 340.37 15.07 5.13 5.13 Total: -1.00 -34.96 340.37 -9.23 -44.18 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -4.97 Total: 6.09 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -4.60 Total: -1.70 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -0.17 Total: -59.92 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.71 Total: 16.90 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.96 -9.23 -44.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970289862.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.099 kcal (2) G-P(sol) polarization free energy of solvation -34.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.17 seconds