Wall clock time and date at job start Fri Apr 10 2020 22:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86792 * 120.00068 * 2 1 4 4 H 1.48502 * 109.47152 * 269.99876 * 3 2 1 5 5 H 1.48502 * 109.47264 * 29.99705 * 3 2 1 6 6 H 1.48503 * 109.47185 * 149.99994 * 3 2 1 7 7 C 1.38809 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00327 * 0.02562 * 7 2 1 9 9 N 1.36941 * 120.00069 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00174 * 180.02562 * 9 7 2 11 11 H 1.09005 * 110.78052 * 323.21043 * 10 9 7 12 12 C 1.55150 * 110.72042 * 199.97678 * 10 9 7 13 13 C 1.55131 * 101.48826 * 205.96806 * 12 10 9 14 14 N 1.47431 * 104.71947 * 37.29249 * 13 12 10 15 15 C 1.34770 * 125.64540 * 155.81916 * 14 13 12 16 16 O 1.21551 * 120.00064 * 185.40346 * 15 14 13 17 17 C 1.47879 * 120.00490 * 5.40173 * 15 14 13 18 18 C 1.40579 * 119.70762 * 24.97199 * 17 15 14 19 19 C 1.35813 * 120.74066 * 180.30153 * 18 17 15 20 20 C 1.40550 * 119.98237 * 359.70593 * 19 18 17 21 21 C 1.40818 * 121.14155 * 180.02562 * 20 19 18 22 22 C 1.36546 * 118.19978 * 179.97438 * 21 20 19 23 23 C 1.39419 * 119.94210 * 0.02562 * 22 21 20 24 24 N 1.31017 * 121.71039 * 359.97438 * 23 22 21 25 25 C 1.33746 * 121.34943 * 0.04154 * 24 23 22 26 26 C 1.38405 * 119.71506 * 204.70012 * 17 15 14 27 27 C 1.47019 * 108.70158 * 335.55332 * 14 13 12 28 28 H 0.97004 * 120.00134 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99653 * 0.02562 * 9 7 2 30 30 H 1.09003 * 111.00545 * 324.20467 * 12 10 9 31 31 H 1.09000 * 111.01294 * 88.01945 * 12 10 9 32 32 H 1.08993 * 110.49822 * 278.45433 * 13 12 10 33 33 H 1.08997 * 110.34433 * 156.05172 * 13 12 10 34 34 H 1.08005 * 119.63191 * 0.02562 * 18 17 15 35 35 H 1.08001 * 120.01275 * 179.72404 * 19 18 17 36 36 H 1.08003 * 120.90033 * 359.96361 * 21 20 19 37 37 H 1.08000 * 120.02869 * 179.97438 * 22 21 20 38 38 H 1.07999 * 119.14305 * 180.02562 * 23 22 21 39 39 H 1.08005 * 120.22574 * 0.02562 * 26 17 15 40 40 H 1.08999 * 109.87828 * 120.70634 * 27 14 13 41 41 H 1.08994 * 109.88238 * 241.86813 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5984 -3.2141 0.6110 12 6 5.5675 -2.2646 0.4974 13 6 6.3001 -3.4439 -0.1946 14 7 5.6621 -3.5558 -1.5190 15 6 6.2248 -4.0945 -2.6188 16 8 5.6430 -4.0460 -3.6849 17 6 7.5500 -4.7444 -2.5287 18 6 7.9855 -5.2712 -1.3003 19 6 9.2012 -5.8670 -1.1923 20 6 10.0366 -5.9676 -2.3181 21 6 11.3014 -6.5809 -2.2340 22 6 12.0633 -6.6463 -3.3652 23 6 11.5820 -6.1132 -4.5602 24 7 10.4047 -5.5432 -4.6352 25 6 9.6091 -5.4461 -3.5644 26 6 8.3483 -4.8339 -3.6558 27 6 4.3083 -2.9882 -1.4396 28 1 -0.4850 0.8401 -0.0004 29 1 3.8646 -0.3622 0.0014 30 1 5.9620 -1.3050 0.1631 31 1 5.6265 -2.3522 1.5823 32 1 6.1616 -4.3646 0.3721 33 1 7.3613 -3.2198 -0.3025 34 1 7.3481 -5.1972 -0.4315 35 1 9.5258 -6.2637 -0.2417 36 1 11.6592 -6.9883 -1.3000 37 1 13.0382 -7.1099 -3.3342 38 1 12.1952 -6.1724 -5.4472 39 1 8.0064 -4.4308 -4.5977 40 1 4.2099 -2.1640 -2.1460 41 1 3.5697 -3.7588 -1.6606 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970289862.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:24 Heat of formation + Delta-G solvation = 29.070957 kcal Electronic energy + Delta-G solvation = -24411.437153 eV Core-core repulsion = 20870.005231 eV Total energy + Delta-G solvation = -3541.431922 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.02766 -41.04309 -38.91534 -37.77869 -36.09371 -34.48224 -33.67101 -32.03158 -31.29732 -31.03795 -29.37152 -26.52966 -25.14368 -24.96785 -23.73516 -23.16387 -21.89263 -20.98515 -19.86286 -19.41323 -18.09862 -17.87663 -17.63331 -17.19733 -16.50985 -16.39226 -15.76519 -15.51959 -15.49641 -15.27049 -14.92444 -14.74872 -14.60786 -14.32213 -14.01203 -13.92169 -13.81127 -13.37207 -13.04708 -12.95534 -12.77885 -12.71125 -12.44277 -12.21367 -12.00916 -11.84843 -11.58672 -11.56116 -11.23212 -11.04065 -10.48751 -9.90643 -9.74120 -9.42124 -9.31491 -8.05043 -5.40929 -0.77693 -0.35457 0.86147 1.36096 1.40979 1.42569 1.47263 1.78119 2.14693 2.46377 3.06864 3.16343 3.25825 3.43558 3.48624 3.56456 3.71278 3.82926 3.87697 4.00224 4.05424 4.06547 4.24136 4.30081 4.36231 4.46812 4.58342 4.60912 4.71466 4.84839 4.87466 4.90211 4.94905 5.09875 5.13657 5.15870 5.23764 5.30891 5.33493 5.53291 5.74670 5.78865 6.18789 6.40059 6.91634 6.94279 7.03960 7.77803 7.95847 9.15920 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.031873 B = 0.002642 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.278280 B =10594.386402 C =10817.453731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.062 4.062 3 Si 0.953 3.047 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.242 1.242 7 C -0.236 4.236 8 H 0.060 0.940 9 N -0.740 5.740 10 C 0.170 3.830 11 H 0.078 0.922 12 C -0.132 4.132 13 C 0.096 3.904 14 N -0.604 5.604 15 C 0.559 3.441 16 O -0.591 6.591 17 C -0.111 4.111 18 C -0.110 4.110 19 C -0.078 4.078 20 C -0.102 4.102 21 C -0.055 4.055 22 C -0.164 4.164 23 C 0.126 3.874 24 N -0.516 5.516 25 C 0.094 3.906 26 C -0.057 4.057 27 C 0.091 3.909 28 H 0.258 0.742 29 H 0.369 0.631 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.168 0.832 35 H 0.184 0.816 36 H 0.183 0.817 37 H 0.179 0.821 38 H 0.186 0.814 39 H 0.116 0.884 40 H 0.039 0.961 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.255 -15.907 2.614 36.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.254 4.254 3 Si 0.780 3.220 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.166 1.166 7 C -0.367 4.367 8 H 0.078 0.922 9 N -0.382 5.382 10 C 0.060 3.940 11 H 0.096 0.904 12 C -0.170 4.170 13 C -0.024 4.024 14 N -0.336 5.336 15 C 0.349 3.651 16 O -0.473 6.473 17 C -0.116 4.116 18 C -0.127 4.127 19 C -0.096 4.096 20 C -0.104 4.104 21 C -0.080 4.080 22 C -0.183 4.183 23 C -0.047 4.047 24 N -0.225 5.225 25 C -0.026 4.026 26 C -0.077 4.077 27 C -0.036 4.036 28 H 0.067 0.933 29 H 0.203 0.797 30 H 0.092 0.908 31 H 0.137 0.863 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.185 0.815 35 H 0.201 0.799 36 H 0.200 0.800 37 H 0.197 0.803 38 H 0.202 0.798 39 H 0.134 0.866 40 H 0.057 0.943 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 31.328 -15.580 1.285 35.012 hybrid contribution -0.595 1.106 -0.326 1.298 sum 30.733 -14.474 0.959 33.984 Atomic orbital electron populations 1.69885 1.07203 1.26755 1.59281 1.25531 0.96112 1.01381 1.02393 0.85439 0.79136 0.79662 0.77720 1.21472 1.22102 1.16578 1.19041 0.82490 0.93556 1.41607 0.92213 1.42692 1.02562 1.03596 1.89394 1.21407 0.93156 0.88046 0.91397 0.90362 1.23162 0.92576 0.98596 1.02705 1.23047 0.98522 0.99713 0.81155 1.48441 1.16054 1.58043 1.11074 1.18563 0.85939 0.78215 0.82375 1.90764 1.65672 1.61138 1.29714 1.19695 0.93232 1.02693 0.95998 1.21686 0.97801 0.96964 0.96271 1.21383 0.92369 0.97010 0.98798 1.19315 0.97397 0.99615 0.94054 1.22025 0.90789 0.94010 1.01190 1.22413 1.02939 1.00214 0.92731 1.23667 0.90761 0.90466 0.99788 1.67997 1.06642 1.17029 1.30857 1.18804 0.94148 0.99050 0.90559 1.21080 0.92200 0.96517 0.97858 1.22830 0.82454 0.96850 1.01419 0.93304 0.79730 0.90833 0.86321 0.87062 0.87611 0.81452 0.79917 0.79971 0.80321 0.79751 0.86633 0.94250 0.93637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.01 13.97 21.65 0.30 -62.71 16 2 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 3 Si 0.95 45.13 27.74 68.60 1.90 47.03 16 4 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.24 -9.94 6.52 99.48 0.65 -9.30 16 7 C -0.24 -13.20 10.46 84.03 0.88 -12.32 16 8 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 9 N -0.74 -33.00 4.98 -317.34 -1.58 -34.58 16 10 C 0.17 5.85 3.59 46.18 0.17 6.02 16 11 H 0.08 2.67 8.12 -2.38 -0.02 2.65 16 12 C -0.13 -2.99 6.71 32.06 0.21 -2.77 16 13 C 0.10 1.79 4.99 86.93 0.43 2.23 16 14 N -0.60 -18.21 3.32 -814.74 -2.71 -20.92 16 15 C 0.56 19.09 7.63 86.80 0.66 19.75 16 16 O -0.59 -26.27 16.89 -3.87 -0.07 -26.34 16 17 C -0.11 -2.92 5.66 -20.11 -0.11 -3.04 16 18 C -0.11 -1.78 7.96 22.28 0.18 -1.60 16 19 C -0.08 -0.89 9.74 22.27 0.22 -0.67 16 20 C -0.10 -1.59 5.75 -21.23 -0.12 -1.72 16 21 C -0.05 -0.45 9.88 22.51 0.22 -0.23 16 22 C -0.16 -1.23 10.03 22.16 0.22 -1.01 16 23 C 0.13 1.72 11.15 85.10 0.95 2.67 16 24 N -0.52 -12.06 10.34 -188.66 -1.95 -14.01 16 25 C 0.09 2.25 6.60 40.25 0.27 2.52 16 26 C -0.06 -1.62 9.55 22.85 0.22 -1.40 16 27 C 0.09 3.40 6.62 86.73 0.57 3.97 16 28 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 29 H 0.37 15.72 5.57 -92.71 -0.52 15.20 16 30 H 0.07 1.75 8.00 -2.39 -0.02 1.73 16 31 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.11 1.33 6.81 -2.39 -0.02 1.31 16 33 H 0.11 1.48 6.82 -2.39 -0.02 1.47 16 34 H 0.17 1.85 4.55 -2.91 -0.01 1.84 16 35 H 0.18 0.40 8.06 -2.91 -0.02 0.38 16 36 H 0.18 -0.03 8.06 -2.91 -0.02 -0.06 16 37 H 0.18 -0.10 8.06 -2.91 -0.02 -0.13 16 38 H 0.19 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.12 3.84 7.81 -2.91 -0.02 3.82 16 40 H 0.04 1.74 8.03 -2.39 -0.02 1.72 16 41 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -86.15 340.37 1.83 -84.33 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.49 Total: 17.99 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 5.43 Total: 9.20 kcal Atomic # 7 Polarization: -126.28 SS G_CDS: -5.94 Total: -132.22 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.07 Total: -26.34 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.90 Total: 47.03 kcal Total: -86.15 1.83 -84.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970289862.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.400 kcal (2) G-P(sol) polarization free energy of solvation -86.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds