Wall clock time and date at job start Fri Apr 10 2020 22:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99551 * 2 1 4 4 H 1.48495 * 109.47359 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46755 * 120.00249 * 3 2 1 6 6 H 1.48501 * 109.46794 * 239.99922 * 3 2 1 7 7 C 1.38808 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00085 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00126 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99844 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.64404 * 328.13853 * 10 9 7 12 12 C 1.55162 * 110.72037 * 205.00051 * 10 9 7 13 13 C 1.54905 * 101.58288 * 206.14053 * 12 10 9 14 14 N 1.47428 * 104.83445 * 37.00334 * 13 12 10 15 15 C 1.34770 * 125.64535 * 155.83751 * 14 13 12 16 16 O 1.21591 * 120.00234 * 175.34390 * 15 14 13 17 17 C 1.47572 * 120.00304 * 355.34593 * 15 14 13 18 18 C 1.38708 * 120.43498 * 42.42725 * 17 15 14 19 19 C 1.38996 * 120.75239 * 179.97438 * 18 17 15 20 20 C 1.36346 * 121.19145 * 0.02562 * 19 18 17 21 21 C 1.40355 * 119.92566 * 359.97438 * 20 19 18 22 22 C 1.40684 * 122.09885 * 179.97438 * 21 20 19 23 23 C 1.36260 * 118.66895 * 180.02562 * 22 21 20 24 24 N 1.32509 * 121.83947 * 359.96950 * 23 22 21 25 25 C 1.31320 * 122.72205 * 0.03401 * 24 23 22 26 26 C 1.40142 * 119.91297 * 359.73906 * 25 24 23 27 27 C 1.47023 * 108.70399 * 335.87789 * 14 13 12 28 28 H 0.97003 * 119.99954 * 180.02562 * 1 2 3 29 29 H 0.97001 * 120.00116 * 359.97438 * 9 7 2 30 30 H 1.09001 * 111.00072 * 324.21068 * 12 10 9 31 31 H 1.08997 * 111.00314 * 88.01868 * 12 10 9 32 32 H 1.08997 * 110.37176 * 155.84796 * 13 12 10 33 33 H 1.09005 * 110.35975 * 278.17036 * 13 12 10 34 34 H 1.08000 * 119.61828 * 359.95478 * 18 17 15 35 35 H 1.08001 * 119.40370 * 180.02562 * 19 18 17 36 36 H 1.07994 * 120.03419 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.66769 * 359.97438 * 22 21 20 38 38 H 1.07996 * 119.08470 * 180.02562 * 23 22 21 39 39 H 1.08001 * 120.04460 * 179.97438 * 25 24 23 40 40 H 1.09002 * 109.87931 * 241.64133 * 27 14 13 41 41 H 1.08998 * 109.87980 * 120.47040 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 1 3.0002 -3.5561 -0.5408 12 6 1.1933 -4.7896 -0.6148 13 6 1.7912 -6.0433 0.0708 14 7 2.1117 -5.6069 1.4421 15 6 2.2140 -6.4113 2.5186 16 8 2.5670 -5.9535 3.5883 17 6 1.8977 -7.8478 2.3991 18 6 2.3299 -8.5732 1.2987 19 6 2.0362 -9.9266 1.1797 20 6 1.3171 -10.5799 2.1363 21 6 0.8603 -9.8838 3.2663 22 6 0.1145 -10.5120 4.2803 23 6 -0.2943 -9.7690 5.3469 24 7 -0.0080 -8.4794 5.4513 25 6 0.6831 -7.8299 4.5430 26 6 1.1545 -8.5046 3.4088 27 6 2.3001 -4.1488 1.4409 28 1 -0.4850 -0.8401 0.0004 29 1 0.3557 -2.3881 0.0002 30 1 0.1427 -4.6645 -0.3525 31 1 1.3207 -4.8366 -1.6963 32 1 1.0590 -6.8504 0.0909 33 1 2.6958 -6.3634 -0.4465 34 1 2.9008 -8.0808 0.5254 35 1 2.3840 -10.4705 0.3139 36 1 1.0993 -11.6317 2.0247 37 1 -0.1298 -11.5620 4.2144 38 1 -0.8668 -10.2446 6.1294 39 1 0.8913 -6.7780 4.6719 40 1 3.3169 -3.9062 1.7497 41 1 1.5837 -3.6819 2.1168 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970382277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:29 Heat of formation + Delta-G solvation = 44.183661 kcal Electronic energy + Delta-G solvation = -24823.746895 eV Core-core repulsion = 21282.970309 eV Total energy + Delta-G solvation = -3540.776586 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -41.30532 -39.72326 -37.59510 -37.31588 -34.51910 -33.25070 -31.72653 -31.49557 -30.04050 -29.62773 -27.44926 -25.10414 -24.10546 -23.82424 -23.17798 -22.36523 -20.43341 -19.56936 -18.39872 -17.65230 -17.38035 -17.03244 -16.48477 -16.21659 -15.39916 -15.00830 -14.72448 -14.62505 -14.34233 -14.15330 -13.86069 -13.66018 -13.42834 -13.10183 -12.86641 -12.73523 -12.39380 -12.21490 -12.04568 -11.83752 -11.45198 -11.30206 -10.77383 -10.71836 -10.50834 -10.34723 -10.02423 -9.92221 -9.63881 -9.44144 -9.26526 -9.05107 -8.54738 -8.34335 -7.20524 -6.19626 -3.22512 -0.10535 0.59375 1.41783 2.52121 2.82559 3.05859 3.48993 3.52403 3.69636 3.81764 4.13850 4.24406 4.36212 4.46021 4.51657 4.59829 4.64706 4.74342 4.79620 4.98210 5.08052 5.08834 5.31617 5.36290 5.39119 5.43843 5.58432 5.60111 5.65516 5.72680 5.77244 5.87702 5.88713 6.00802 6.14340 6.18874 6.30082 6.35283 6.46172 6.52616 6.71281 7.54915 7.71339 7.78613 8.11532 8.65761 9.08696 9.95422 10.07818 11.28004 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.023457 B = 0.003000 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.394847 B = 9331.469735 C = 9938.692783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.039 4.039 3 Si 1.080 2.920 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.342 4.342 8 H 0.068 0.932 9 N -0.723 5.723 10 C 0.178 3.822 11 H 0.071 0.929 12 C -0.144 4.144 13 C 0.097 3.903 14 N -0.602 5.602 15 C 0.565 3.435 16 O -0.532 6.532 17 C -0.084 4.084 18 C -0.089 4.089 19 C -0.102 4.102 20 C -0.096 4.096 21 C -0.027 4.027 22 C -0.162 4.162 23 C 0.079 3.921 24 N -0.487 5.487 25 C 0.159 3.841 26 C -0.081 4.081 27 C 0.082 3.918 28 H 0.256 0.744 29 H 0.370 0.630 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.154 0.846 39 H 0.175 0.825 40 H 0.063 0.937 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.206 -24.970 0.862 25.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.237 4.237 3 Si 0.910 3.090 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.472 4.472 8 H 0.086 0.914 9 N -0.364 5.364 10 C 0.065 3.935 11 H 0.089 0.911 12 C -0.183 4.183 13 C -0.026 4.026 14 N -0.335 5.335 15 C 0.353 3.647 16 O -0.411 6.411 17 C -0.089 4.089 18 C -0.107 4.107 19 C -0.121 4.121 20 C -0.114 4.114 21 C -0.032 4.032 22 C -0.181 4.181 23 C -0.065 4.065 24 N -0.195 5.195 25 C -0.012 4.012 26 C -0.084 4.084 27 C -0.043 4.043 28 H 0.067 0.933 29 H 0.204 0.796 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.171 0.829 39 H 0.192 0.808 40 H 0.081 0.919 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.087 -22.691 2.272 22.900 hybrid contribution 0.267 -2.312 -0.728 2.439 sum 2.354 -25.003 1.544 25.161 Atomic orbital electron populations 1.70903 1.06094 1.28527 1.52766 1.25828 0.96986 1.01152 0.99780 0.83246 0.74278 0.75471 0.75977 1.20964 1.22074 1.22128 1.20060 0.92138 0.85562 1.49488 0.91442 1.42384 1.04873 1.00422 1.88704 1.21151 0.95324 0.85850 0.91146 0.91097 1.23133 1.00654 0.94163 1.00338 1.22512 0.99681 0.98263 0.82149 1.48494 1.67903 1.09273 1.07822 1.17799 0.78472 0.85047 0.83409 1.90805 1.47286 1.76011 1.26960 1.19934 0.99966 0.93854 0.95137 1.21560 0.98304 0.94484 0.96393 1.20918 0.97743 0.94140 0.99284 1.21116 0.97360 1.00052 0.92874 1.18120 0.97163 0.92442 0.95454 1.21885 1.00033 1.01222 0.94989 1.22304 0.97294 0.89832 0.97036 1.67574 1.12708 1.09883 1.29333 1.23644 0.89334 1.00869 0.87351 1.18762 0.99566 0.93696 0.96338 1.23306 1.01712 0.76837 1.02422 0.93318 0.79586 0.90639 0.89798 0.90685 0.91078 0.84505 0.84757 0.84719 0.84295 0.82883 0.80829 0.91854 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.40 13.70 55.49 0.76 -27.64 16 2 C -0.04 -1.11 5.50 -17.43 -0.10 -1.21 16 3 Si 1.08 25.42 29.92 -169.99 -5.09 20.33 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.34 -9.25 9.96 -15.06 -0.15 -9.40 16 8 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 9 N -0.72 -17.16 5.15 -51.65 -0.27 -17.42 16 10 C 0.18 3.27 3.61 -66.09 -0.24 3.04 16 11 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 12 C -0.14 -2.03 6.71 -24.58 -0.17 -2.19 16 13 C 0.10 1.14 5.27 -2.53 -0.01 1.13 16 14 N -0.60 -9.22 3.33 -171.73 -0.57 -9.79 16 15 C 0.56 9.07 7.06 -12.46 -0.09 8.98 16 16 O -0.53 -10.34 15.30 5.29 0.08 -10.26 16 17 C -0.08 -1.09 5.39 -104.66 -0.56 -1.66 16 18 C -0.09 -0.86 7.98 -39.13 -0.31 -1.17 16 19 C -0.10 -0.77 9.93 -39.98 -0.40 -1.16 16 20 C -0.10 -0.76 9.79 -39.47 -0.39 -1.15 16 21 C -0.03 -0.28 5.74 -106.84 -0.61 -0.90 16 22 C -0.16 -1.49 9.88 -39.37 -0.39 -1.87 16 23 C 0.08 0.84 11.07 -17.97 -0.20 0.64 16 24 N -0.49 -6.85 10.30 -13.21 -0.14 -6.98 16 25 C 0.16 2.34 10.42 -17.06 -0.18 2.16 16 26 C -0.08 -1.08 5.76 -106.59 -0.61 -1.69 16 27 C 0.08 1.51 6.62 -3.06 -0.02 1.49 16 28 H 0.26 7.58 6.78 -40.82 -0.28 7.30 16 29 H 0.37 9.09 6.59 -40.82 -0.27 8.82 16 30 H 0.07 1.13 8.01 -51.93 -0.42 0.71 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 0.76 6.83 -51.93 -0.35 0.41 16 33 H 0.07 0.68 7.36 -51.93 -0.38 0.29 16 34 H 0.14 1.10 6.06 -52.49 -0.32 0.78 16 35 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.17 2.80 6.06 -52.49 -0.32 2.48 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.07 1.55 8.03 -51.93 -0.42 1.14 16 LS Contribution 339.84 15.07 5.12 5.12 Total: -1.00 -33.89 339.84 -9.43 -43.32 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -4.91 Total: 8.30 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -4.42 Total: -4.97 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: -0.21 Total: -61.85 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.09 Total: 20.33 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.89 -9.43 -43.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970382277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.506 kcal (2) G-P(sol) polarization free energy of solvation -33.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds