Wall clock time and date at job start Fri Apr 10 2020 22:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99551 * 2 1 4 4 H 1.48495 * 109.47359 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46755 * 120.00249 * 3 2 1 6 6 H 1.48501 * 109.46794 * 239.99922 * 3 2 1 7 7 C 1.38808 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00085 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00126 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99844 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.64404 * 328.13853 * 10 9 7 12 12 C 1.55162 * 110.72037 * 205.00051 * 10 9 7 13 13 C 1.54905 * 101.58288 * 206.14053 * 12 10 9 14 14 N 1.47428 * 104.83445 * 37.00334 * 13 12 10 15 15 C 1.34770 * 125.64535 * 155.83751 * 14 13 12 16 16 O 1.21591 * 120.00234 * 175.34390 * 15 14 13 17 17 C 1.47572 * 120.00304 * 355.34593 * 15 14 13 18 18 C 1.38708 * 120.43498 * 42.42725 * 17 15 14 19 19 C 1.38996 * 120.75239 * 179.97438 * 18 17 15 20 20 C 1.36346 * 121.19145 * 0.02562 * 19 18 17 21 21 C 1.40355 * 119.92566 * 359.97438 * 20 19 18 22 22 C 1.40684 * 122.09885 * 179.97438 * 21 20 19 23 23 C 1.36260 * 118.66895 * 180.02562 * 22 21 20 24 24 N 1.32509 * 121.83947 * 359.96950 * 23 22 21 25 25 C 1.31320 * 122.72205 * 0.03401 * 24 23 22 26 26 C 1.40142 * 119.91297 * 359.73906 * 25 24 23 27 27 C 1.47023 * 108.70399 * 335.87789 * 14 13 12 28 28 H 0.97003 * 119.99954 * 180.02562 * 1 2 3 29 29 H 0.97001 * 120.00116 * 359.97438 * 9 7 2 30 30 H 1.09001 * 111.00072 * 324.21068 * 12 10 9 31 31 H 1.08997 * 111.00314 * 88.01868 * 12 10 9 32 32 H 1.08997 * 110.37176 * 155.84796 * 13 12 10 33 33 H 1.09005 * 110.35975 * 278.17036 * 13 12 10 34 34 H 1.08000 * 119.61828 * 359.95478 * 18 17 15 35 35 H 1.08001 * 119.40370 * 180.02562 * 19 18 17 36 36 H 1.07994 * 120.03419 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.66769 * 359.97438 * 22 21 20 38 38 H 1.07996 * 119.08470 * 180.02562 * 23 22 21 39 39 H 1.08001 * 120.04460 * 179.97438 * 25 24 23 40 40 H 1.09002 * 109.87931 * 241.64133 * 27 14 13 41 41 H 1.08998 * 109.87980 * 120.47040 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 1 3.0002 -3.5561 -0.5408 12 6 1.1933 -4.7896 -0.6148 13 6 1.7912 -6.0433 0.0708 14 7 2.1117 -5.6069 1.4421 15 6 2.2140 -6.4113 2.5186 16 8 2.5670 -5.9535 3.5883 17 6 1.8977 -7.8478 2.3991 18 6 2.3299 -8.5732 1.2987 19 6 2.0362 -9.9266 1.1797 20 6 1.3171 -10.5799 2.1363 21 6 0.8603 -9.8838 3.2663 22 6 0.1145 -10.5120 4.2803 23 6 -0.2943 -9.7690 5.3469 24 7 -0.0080 -8.4794 5.4513 25 6 0.6831 -7.8299 4.5430 26 6 1.1545 -8.5046 3.4088 27 6 2.3001 -4.1488 1.4409 28 1 -0.4850 -0.8401 0.0004 29 1 0.3557 -2.3881 0.0002 30 1 0.1427 -4.6645 -0.3525 31 1 1.3207 -4.8366 -1.6963 32 1 1.0590 -6.8504 0.0909 33 1 2.6958 -6.3634 -0.4465 34 1 2.9008 -8.0808 0.5254 35 1 2.3840 -10.4705 0.3139 36 1 1.0993 -11.6317 2.0247 37 1 -0.1298 -11.5620 4.2144 38 1 -0.8668 -10.2446 6.1294 39 1 0.8913 -6.7780 4.6719 40 1 3.3169 -3.9062 1.7497 41 1 1.5837 -3.6819 2.1168 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970382277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:28 Heat of formation + Delta-G solvation = 21.071135 kcal Electronic energy + Delta-G solvation = -24824.749130 eV Core-core repulsion = 21282.970309 eV Total energy + Delta-G solvation = -3541.778820 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.20468 -40.88441 -38.87154 -38.23627 -36.31965 -34.18016 -33.32354 -32.28156 -31.19376 -30.86262 -28.93197 -26.30047 -25.46409 -24.69759 -24.51993 -23.42242 -21.85903 -20.70746 -19.54100 -19.23916 -18.45106 -17.91958 -17.66588 -17.30257 -16.60894 -16.45956 -15.94608 -15.66437 -15.54330 -15.27691 -15.13915 -14.97379 -14.57319 -14.33888 -14.00978 -13.68300 -13.58105 -13.18658 -13.02281 -12.96211 -12.83308 -12.61777 -12.42721 -12.41530 -11.89852 -11.79897 -11.36830 -11.24959 -11.11129 -10.98544 -10.54499 -10.21699 -9.83661 -9.23716 -9.13196 -8.42836 -5.39378 -0.91056 -0.17106 0.54516 1.50162 1.57895 1.67444 1.77916 1.83627 2.05623 2.69087 2.98279 3.20543 3.35557 3.40206 3.51063 3.60609 3.69441 3.72933 3.80080 3.88593 3.94990 4.15148 4.19838 4.22409 4.34784 4.40058 4.54097 4.57002 4.61655 4.75089 4.75967 4.82428 4.87667 4.98819 5.07178 5.11120 5.20085 5.24909 5.31835 5.57308 5.58710 5.74939 6.34924 6.45838 6.86759 6.93406 7.02782 7.91939 8.02205 9.08504 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.023457 B = 0.003000 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.394847 B = 9331.469735 C = 9938.692783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.101 4.101 3 Si 1.126 2.874 4 H -0.294 1.294 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.337 4.337 8 H 0.071 0.929 9 N -0.737 5.737 10 C 0.171 3.829 11 H 0.078 0.922 12 C -0.132 4.132 13 C 0.102 3.898 14 N -0.603 5.603 15 C 0.561 3.439 16 O -0.584 6.584 17 C -0.124 4.124 18 C -0.064 4.064 19 C -0.100 4.100 20 C -0.074 4.074 21 C -0.046 4.046 22 C -0.133 4.133 23 C 0.050 3.950 24 N -0.512 5.512 25 C 0.117 3.883 26 C -0.093 4.093 27 C 0.094 3.906 28 H 0.245 0.755 29 H 0.362 0.638 30 H 0.062 0.938 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.157 0.843 35 H 0.180 0.820 36 H 0.180 0.820 37 H 0.187 0.813 38 H 0.181 0.819 39 H 0.138 0.862 40 H 0.049 0.951 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.176 -29.728 -1.738 29.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.292 4.292 3 Si 0.950 3.050 4 H -0.220 1.220 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.468 4.468 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.061 3.939 11 H 0.096 0.904 12 C -0.171 4.171 13 C -0.020 4.020 14 N -0.335 5.335 15 C 0.352 3.648 16 O -0.465 6.465 17 C -0.129 4.129 18 C -0.082 4.082 19 C -0.119 4.119 20 C -0.091 4.091 21 C -0.052 4.052 22 C -0.152 4.152 23 C -0.093 4.093 24 N -0.221 5.221 25 C -0.053 4.053 26 C -0.096 4.096 27 C -0.032 4.032 28 H 0.055 0.945 29 H 0.195 0.805 30 H 0.081 0.919 31 H 0.129 0.871 32 H 0.119 0.881 33 H 0.127 0.873 34 H 0.175 0.825 35 H 0.198 0.802 36 H 0.197 0.803 37 H 0.204 0.796 38 H 0.198 0.802 39 H 0.155 0.845 40 H 0.067 0.933 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.087 -27.513 -0.360 27.688 hybrid contribution -0.022 -1.057 0.104 1.062 sum 3.066 -28.569 -0.256 28.734 Atomic orbital electron populations 1.71003 1.07242 1.27978 1.55892 1.27189 0.97074 1.04741 1.00244 0.82656 0.73432 0.71662 0.77207 1.22015 1.20898 1.19699 1.20412 0.92501 0.86845 1.47026 0.91123 1.42559 1.04707 1.01548 1.88961 1.21377 0.96141 0.85241 0.91157 0.90423 1.23068 0.99111 0.93059 1.01854 1.22790 1.01912 0.97560 0.79705 1.48510 1.67852 1.07616 1.09543 1.18452 0.77221 0.86653 0.82501 1.90763 1.49464 1.77371 1.28927 1.19646 1.03765 0.91843 0.97651 1.21933 0.95975 0.95574 0.94730 1.21408 0.96930 0.92960 1.00593 1.21663 0.94873 1.01807 0.90792 1.18526 0.98033 0.91290 0.97341 1.22398 0.96902 1.02923 0.92955 1.22828 0.98630 0.88826 0.99065 1.67432 1.12850 1.12047 1.29764 1.23189 0.92486 1.00001 0.89623 1.18849 0.99815 0.95291 0.95654 1.22823 0.99557 0.79353 1.01478 0.94488 0.80542 0.91895 0.87106 0.88141 0.87291 0.82515 0.80227 0.80296 0.79590 0.80189 0.84486 0.93283 0.94993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.03 13.70 21.65 0.30 -60.74 16 2 C -0.10 -5.85 5.50 84.86 0.47 -5.38 16 3 Si 1.13 52.03 29.92 68.60 2.05 54.08 16 4 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.34 -18.64 9.96 84.03 0.84 -17.80 16 8 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 9 N -0.74 -36.22 5.15 -317.32 -1.63 -37.85 16 10 C 0.17 6.38 3.61 46.18 0.17 6.55 16 11 H 0.08 2.80 8.09 -2.39 -0.02 2.79 16 12 C -0.13 -3.53 6.71 31.99 0.21 -3.32 16 13 C 0.10 2.13 5.27 86.85 0.46 2.58 16 14 N -0.60 -18.85 3.33 -815.49 -2.71 -21.56 16 15 C 0.56 19.04 7.06 86.71 0.61 19.65 16 16 O -0.58 -25.15 15.30 -4.00 -0.06 -25.21 16 17 C -0.12 -3.18 5.39 -19.89 -0.11 -3.29 16 18 C -0.06 -0.98 7.98 22.56 0.18 -0.80 16 19 C -0.10 -0.88 9.93 22.01 0.22 -0.66 16 20 C -0.07 -0.72 9.79 22.34 0.22 -0.50 16 21 C -0.05 -0.85 5.74 -21.30 -0.12 -0.97 16 22 C -0.13 -1.97 9.88 22.41 0.22 -1.75 16 23 C 0.05 1.02 11.07 84.13 0.93 1.95 16 24 N -0.51 -15.38 10.30 -195.72 -2.02 -17.40 16 25 C 0.12 3.81 10.42 85.23 0.89 4.70 16 26 C -0.09 -2.51 5.76 -21.14 -0.12 -2.63 16 27 C 0.09 3.67 6.62 86.73 0.57 4.25 16 28 H 0.24 15.24 6.78 -92.71 -0.63 14.61 16 29 H 0.36 18.70 6.59 -92.71 -0.61 18.09 16 30 H 0.06 1.86 8.01 -2.39 -0.02 1.84 16 31 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.10 1.67 6.83 -2.39 -0.02 1.65 16 33 H 0.11 1.54 7.36 -2.38 -0.02 1.52 16 34 H 0.16 1.71 6.06 -2.91 -0.02 1.69 16 35 H 0.18 0.08 8.06 -2.91 -0.02 0.06 16 36 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 37 H 0.19 0.94 8.06 -2.91 -0.02 0.91 16 38 H 0.18 2.43 8.06 -2.91 -0.02 2.40 16 39 H 0.14 5.27 6.06 -2.91 -0.02 5.25 16 40 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.03 1.49 8.03 -2.39 -0.02 1.47 16 Total: -1.00 -83.29 339.84 2.16 -81.13 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.60 Total: 24.97 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 5.64 Total: 2.58 kcal Atomic # 7 Polarization: -131.48 SS G_CDS: -6.07 Total: -137.55 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.06 Total: -25.21 kcal Atomic # 14 Polarization: 52.03 SS G_CDS: 2.05 Total: 54.08 kcal Total: -83.29 2.16 -81.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970382277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.196 kcal (2) G-P(sol) polarization free energy of solvation -83.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds