Wall clock time and date at job start Fri Apr 10 2020 22:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00388 * 2 1 4 4 H 1.48504 * 109.46986 * 269.99880 * 3 2 1 5 5 H 1.48500 * 109.47363 * 29.99690 * 3 2 1 6 6 H 1.48495 * 109.47412 * 149.99663 * 3 2 1 7 7 C 1.38813 * 119.99812 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00381 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99985 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99765 * 179.97438 * 9 7 2 11 11 H 1.08991 * 110.78119 * 323.21549 * 10 9 7 12 12 C 1.55449 * 110.70330 * 200.00468 * 10 9 7 13 13 C 1.54914 * 101.44828 * 206.14698 * 12 10 9 14 14 N 1.47421 * 104.92998 * 37.00596 * 13 12 10 15 15 C 1.34778 * 125.65231 * 155.79565 * 14 13 12 16 16 O 1.21552 * 119.99342 * 354.24010 * 15 14 13 17 17 C 1.47881 * 120.00293 * 174.24055 * 15 14 13 18 18 C 1.40603 * 119.72918 * 7.17478 * 17 15 14 19 19 C 1.35855 * 120.94982 * 179.71067 * 18 17 15 20 20 C 1.40494 * 119.88082 * 0.55961 * 19 18 17 21 21 C 1.40478 * 121.84444 * 179.74590 * 20 19 18 22 22 N 1.31214 * 119.94311 * 179.97438 * 21 20 19 23 23 C 1.32553 * 122.80291 * 0.02562 * 22 21 20 24 24 C 1.36215 * 121.84593 * 359.97438 * 23 22 21 25 25 C 1.40762 * 118.67975 * 0.02562 * 24 23 22 26 26 C 1.38529 * 119.72996 * 187.44699 * 17 15 14 27 27 C 1.47027 * 108.70378 * 335.81805 * 14 13 12 28 28 H 0.97005 * 119.99518 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99858 * 0.02562 * 9 7 2 30 30 H 1.08997 * 111.12114 * 88.09602 * 12 10 9 31 31 H 1.08997 * 111.01543 * 324.15180 * 12 10 9 32 32 H 1.09002 * 110.36901 * 278.11232 * 13 12 10 33 33 H 1.09003 * 110.36609 * 155.89887 * 13 12 10 34 34 H 1.07992 * 119.52757 * 0.02562 * 18 17 15 35 35 H 1.07997 * 120.05883 * 180.25935 * 19 18 17 36 36 H 1.08004 * 120.02844 * 359.97438 * 21 20 19 37 37 H 1.07998 * 119.07922 * 180.02562 * 23 22 21 38 38 H 1.08006 * 120.66246 * 179.97438 * 24 23 22 39 39 H 1.07995 * 120.36708 * 359.97438 * 26 17 15 40 40 H 1.08993 * 109.88593 * 120.47872 * 27 14 13 41 41 H 1.08995 * 109.88048 * 241.64415 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0016 11 1 2.9576 -3.5839 -0.6093 12 6 1.1491 -4.8161 -0.4946 13 6 1.8012 -6.0373 0.2006 14 7 2.2238 -5.5407 1.5227 15 6 2.4091 -6.2964 2.6232 16 8 2.1253 -7.4781 2.6037 17 6 2.9577 -5.6879 3.8544 18 6 3.1421 -4.2956 3.9215 19 6 3.6387 -3.7098 5.0422 20 6 3.9863 -4.5008 6.1501 21 6 4.5081 -3.9392 7.3273 22 7 4.8197 -4.7132 8.3400 23 6 4.6656 -6.0294 8.3119 24 6 4.1680 -6.6716 7.2185 25 6 3.8104 -5.9082 6.0913 26 6 3.2909 -6.4948 4.9299 27 6 2.4092 -4.0844 1.4422 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3880 0.0016 30 1 1.1942 -4.9139 -1.5793 31 1 0.1213 -4.6783 -0.1588 32 1 2.6645 -6.3818 -0.3689 33 1 1.0753 -6.8427 0.3121 34 1 2.8805 -3.6825 3.0719 35 1 3.7706 -2.6386 5.0797 36 1 4.6525 -2.8713 7.3987 37 1 4.9417 -6.6089 9.1804 38 1 4.0508 -7.7453 7.2163 39 1 3.1518 -7.5643 4.8738 40 1 1.7454 -3.5865 2.1490 41 1 3.4460 -3.8300 1.6619 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970412068.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:33 Heat of formation + Delta-G solvation = 61.877203 kcal Electronic energy + Delta-G solvation = -24757.403098 eV Core-core repulsion = 21217.393762 eV Total energy + Delta-G solvation = -3540.009337 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -41.10490 -39.93575 -37.58409 -36.98546 -34.21575 -33.18544 -32.16422 -31.26731 -29.93365 -29.56020 -27.73900 -25.37599 -24.28840 -23.62775 -22.69170 -22.16043 -20.46206 -19.90969 -18.55609 -17.36206 -17.16571 -16.73664 -16.21965 -16.09610 -15.33402 -14.97298 -14.77283 -14.39245 -14.11253 -13.87754 -13.78208 -13.58969 -13.43733 -13.28671 -12.85797 -12.66296 -12.43801 -12.05242 -11.96170 -11.62773 -11.39222 -10.99870 -10.89196 -10.53902 -10.44515 -10.38956 -10.16516 -10.01447 -9.84450 -9.65108 -9.23109 -9.07902 -8.53740 -8.20384 -7.20428 -5.94416 -3.26469 0.05619 0.56937 1.68858 2.46522 3.04026 3.30414 3.33256 3.39008 3.40908 3.93932 4.20488 4.34152 4.37944 4.46253 4.61436 4.66467 4.87543 4.93360 4.99515 5.04034 5.18900 5.25482 5.38692 5.45534 5.51601 5.52585 5.56104 5.63527 5.79361 5.85400 5.92076 5.97603 6.08069 6.13846 6.20153 6.23089 6.35646 6.39953 6.44610 6.62398 6.69697 7.53466 7.61185 7.75521 8.17531 8.22839 9.34902 9.87483 10.22216 11.27196 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.003870 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.707061 B = 7233.148910 C = 9205.811601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.005 4.005 3 Si 0.908 3.092 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.255 4.255 8 H 0.074 0.926 9 N -0.713 5.713 10 C 0.170 3.830 11 H 0.069 0.931 12 C -0.141 4.141 13 C 0.109 3.891 14 N -0.604 5.604 15 C 0.568 3.432 16 O -0.548 6.548 17 C -0.102 4.102 18 C -0.133 4.133 19 C -0.091 4.091 20 C -0.097 4.097 21 C 0.144 3.856 22 N -0.487 5.487 23 C 0.068 3.932 24 C -0.146 4.146 25 C -0.037 4.037 26 C -0.051 4.051 27 C 0.059 3.941 28 H 0.258 0.742 29 H 0.388 0.612 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.178 0.822 35 H 0.141 0.859 36 H 0.166 0.834 37 H 0.153 0.847 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.087 0.913 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.480 -11.279 9.476 16.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.738 3.262 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.385 4.385 8 H 0.092 0.908 9 N -0.353 5.353 10 C 0.058 3.942 11 H 0.087 0.913 12 C -0.180 4.180 13 C -0.013 4.013 14 N -0.337 5.337 15 C 0.357 3.643 16 O -0.428 6.428 17 C -0.106 4.106 18 C -0.150 4.150 19 C -0.111 4.111 20 C -0.100 4.100 21 C -0.027 4.027 22 N -0.195 5.195 23 C -0.075 4.075 24 C -0.165 4.165 25 C -0.042 4.042 26 C -0.071 4.071 27 C -0.066 4.066 28 H 0.068 0.932 29 H 0.223 0.777 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.195 0.805 35 H 0.159 0.841 36 H 0.183 0.817 37 H 0.170 0.830 38 H 0.157 0.843 39 H 0.161 0.839 40 H 0.105 0.895 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.785 -11.536 10.331 17.333 hybrid contribution -0.195 0.590 -0.644 0.895 sum 7.590 -10.947 9.687 16.471 Atomic orbital electron populations 1.69657 1.05213 1.26081 1.56436 1.24780 0.95491 0.97883 1.02084 0.86199 0.78715 0.83602 0.77677 1.21547 1.21665 1.20558 1.19241 0.91113 0.83853 1.44338 0.90842 1.42395 1.05881 0.99339 1.87670 1.21312 0.95143 0.86507 0.91252 0.91350 1.23134 1.00219 0.94117 1.00514 1.22231 0.99109 0.97542 0.82462 1.48395 1.66112 1.09298 1.09860 1.17951 0.78368 0.85552 0.82392 1.90742 1.52463 1.15706 1.83900 1.19995 1.01792 0.94253 0.94586 1.22849 0.96501 0.94634 1.00967 1.21029 0.97981 1.00252 0.91815 1.19237 1.00572 0.93533 0.96622 1.23287 0.92194 1.00022 0.87241 1.67384 1.15887 1.06375 1.29862 1.22151 0.97118 0.90377 0.97868 1.21960 1.00013 1.01062 0.93484 1.18111 0.98597 0.92890 0.94625 1.21369 0.94726 1.00454 0.90508 1.23834 1.00952 0.78456 1.03352 0.93219 0.77749 0.89784 0.90429 0.91388 0.90579 0.80514 0.84125 0.81710 0.83011 0.84323 0.83893 0.89544 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.02 13.06 55.49 0.72 -25.29 16 2 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 3 Si 0.91 20.71 29.55 -169.99 -5.02 15.68 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.25 -6.31 9.98 -15.06 -0.15 -6.46 16 8 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 9 N -0.71 -15.70 5.18 -51.50 -0.27 -15.97 16 10 C 0.17 2.89 3.59 -65.93 -0.24 2.66 16 11 H 0.07 1.15 8.12 -51.93 -0.42 0.73 16 12 C -0.14 -2.02 6.72 -24.42 -0.16 -2.19 16 13 C 0.11 1.50 6.93 -2.53 -0.02 1.48 16 14 N -0.60 -9.19 3.33 -179.12 -0.60 -9.78 16 15 C 0.57 9.20 7.80 -12.31 -0.10 9.10 16 16 O -0.55 -10.12 16.56 5.32 0.09 -10.03 16 17 C -0.10 -1.47 5.87 -104.95 -0.62 -2.08 16 18 C -0.13 -1.77 8.50 -39.54 -0.34 -2.11 16 19 C -0.09 -1.08 9.77 -39.59 -0.39 -1.46 16 20 C -0.10 -1.17 5.75 -106.78 -0.61 -1.79 16 21 C 0.14 1.58 11.04 -16.97 -0.19 1.39 16 22 N -0.49 -5.75 10.29 -13.15 -0.14 -5.88 16 23 C 0.07 0.69 11.07 -17.97 -0.20 0.49 16 24 C -0.15 -1.48 9.88 -39.36 -0.39 -1.87 16 25 C -0.04 -0.46 5.74 -106.82 -0.61 -1.07 16 26 C -0.05 -0.67 9.38 -38.78 -0.36 -1.04 16 27 C 0.06 0.92 4.61 -3.06 -0.01 0.90 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 29 H 0.39 9.26 7.72 -40.82 -0.32 8.94 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.08 1.18 8.01 -51.93 -0.42 0.76 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.05 7.98 -51.93 -0.41 0.63 16 34 H 0.18 2.44 2.64 -62.13 -0.16 2.27 16 35 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.17 1.33 8.06 -52.48 -0.42 0.91 16 37 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 39 H 0.14 1.76 7.64 -52.49 -0.40 1.36 16 40 H 0.09 1.45 6.61 -51.93 -0.34 1.11 16 41 H 0.07 1.03 6.73 -51.93 -0.35 0.68 16 LS Contribution 341.52 15.07 5.15 5.15 Total: -1.00 -30.52 341.52 -9.45 -39.97 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -4.91 Total: 10.44 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -4.48 Total: -4.28 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.27 Total: -56.93 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.52 -9.45 -39.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970412068.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.851 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds