Wall clock time and date at job start Fri Apr 10 2020 22:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00388 * 2 1 4 4 H 1.48504 * 109.46986 * 269.99880 * 3 2 1 5 5 H 1.48500 * 109.47363 * 29.99690 * 3 2 1 6 6 H 1.48495 * 109.47412 * 149.99663 * 3 2 1 7 7 C 1.38813 * 119.99812 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00381 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99985 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99765 * 179.97438 * 9 7 2 11 11 H 1.08991 * 110.78119 * 323.21549 * 10 9 7 12 12 C 1.55449 * 110.70330 * 200.00468 * 10 9 7 13 13 C 1.54914 * 101.44828 * 206.14698 * 12 10 9 14 14 N 1.47421 * 104.92998 * 37.00596 * 13 12 10 15 15 C 1.34778 * 125.65231 * 155.79565 * 14 13 12 16 16 O 1.21552 * 119.99342 * 354.24010 * 15 14 13 17 17 C 1.47881 * 120.00293 * 174.24055 * 15 14 13 18 18 C 1.40603 * 119.72918 * 7.17478 * 17 15 14 19 19 C 1.35855 * 120.94982 * 179.71067 * 18 17 15 20 20 C 1.40494 * 119.88082 * 0.55961 * 19 18 17 21 21 C 1.40478 * 121.84444 * 179.74590 * 20 19 18 22 22 N 1.31214 * 119.94311 * 179.97438 * 21 20 19 23 23 C 1.32553 * 122.80291 * 0.02562 * 22 21 20 24 24 C 1.36215 * 121.84593 * 359.97438 * 23 22 21 25 25 C 1.40762 * 118.67975 * 0.02562 * 24 23 22 26 26 C 1.38529 * 119.72996 * 187.44699 * 17 15 14 27 27 C 1.47027 * 108.70378 * 335.81805 * 14 13 12 28 28 H 0.97005 * 119.99518 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99858 * 0.02562 * 9 7 2 30 30 H 1.08997 * 111.12114 * 88.09602 * 12 10 9 31 31 H 1.08997 * 111.01543 * 324.15180 * 12 10 9 32 32 H 1.09002 * 110.36901 * 278.11232 * 13 12 10 33 33 H 1.09003 * 110.36609 * 155.89887 * 13 12 10 34 34 H 1.07992 * 119.52757 * 0.02562 * 18 17 15 35 35 H 1.07997 * 120.05883 * 180.25935 * 19 18 17 36 36 H 1.08004 * 120.02844 * 359.97438 * 21 20 19 37 37 H 1.07998 * 119.07922 * 180.02562 * 23 22 21 38 38 H 1.08006 * 120.66246 * 179.97438 * 24 23 22 39 39 H 1.07995 * 120.36708 * 359.97438 * 26 17 15 40 40 H 1.08993 * 109.88593 * 120.47872 * 27 14 13 41 41 H 1.08995 * 109.88048 * 241.64415 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0016 11 1 2.9576 -3.5839 -0.6093 12 6 1.1491 -4.8161 -0.4946 13 6 1.8012 -6.0373 0.2006 14 7 2.2238 -5.5407 1.5227 15 6 2.4091 -6.2964 2.6232 16 8 2.1253 -7.4781 2.6037 17 6 2.9577 -5.6879 3.8544 18 6 3.1421 -4.2956 3.9215 19 6 3.6387 -3.7098 5.0422 20 6 3.9863 -4.5008 6.1501 21 6 4.5081 -3.9392 7.3273 22 7 4.8197 -4.7132 8.3400 23 6 4.6656 -6.0294 8.3119 24 6 4.1680 -6.6716 7.2185 25 6 3.8104 -5.9082 6.0913 26 6 3.2909 -6.4948 4.9299 27 6 2.4092 -4.0844 1.4422 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3880 0.0016 30 1 1.1942 -4.9139 -1.5793 31 1 0.1213 -4.6783 -0.1588 32 1 2.6645 -6.3818 -0.3689 33 1 1.0753 -6.8427 0.3121 34 1 2.8805 -3.6825 3.0719 35 1 3.7706 -2.6386 5.0797 36 1 4.6525 -2.8713 7.3987 37 1 4.9417 -6.6089 9.1804 38 1 4.0508 -7.7453 7.2163 39 1 3.1518 -7.5643 4.8738 40 1 1.7454 -3.5865 2.1490 41 1 3.4460 -3.8300 1.6619 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970412068.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:33 Heat of formation + Delta-G solvation = 43.657377 kcal Electronic energy + Delta-G solvation = -24758.193169 eV Core-core repulsion = 21217.393762 eV Total energy + Delta-G solvation = -3540.799407 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.07889 -41.06040 -38.85512 -38.01692 -35.88859 -34.08570 -33.47589 -32.66960 -31.02041 -30.67564 -29.15031 -26.56001 -25.67970 -24.77170 -23.78449 -23.19763 -21.80984 -21.05770 -19.59860 -19.16688 -18.12505 -17.76860 -17.35442 -17.27385 -16.58255 -16.26801 -15.87268 -15.61139 -15.27905 -15.19181 -14.87687 -14.77943 -14.67202 -14.45487 -14.17544 -13.78883 -13.45768 -13.27479 -13.08089 -13.04563 -12.81257 -12.49446 -12.40001 -12.08988 -11.75821 -11.68190 -11.62198 -11.28616 -11.24800 -10.89127 -10.51040 -10.22510 -9.75120 -9.11496 -9.03966 -7.91712 -5.21967 -0.87122 -0.35714 0.77702 1.42005 1.53886 1.54808 1.62561 1.85101 2.25002 2.59693 3.02774 3.22432 3.39380 3.46546 3.51947 3.72311 3.73510 3.82159 3.86397 3.90134 4.01544 4.05660 4.27798 4.30873 4.38513 4.52911 4.57241 4.62890 4.68939 4.72464 4.79506 4.91925 4.96683 5.02924 5.10417 5.14220 5.25688 5.27252 5.38201 5.58795 5.59478 5.69927 6.28324 6.36292 6.93516 6.93898 7.37055 8.07902 8.31459 9.31117 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.003870 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.707061 B = 7233.148910 C = 9205.811601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.068 4.068 3 Si 0.966 3.034 4 H -0.292 1.292 5 H -0.302 1.302 6 H -0.264 1.264 7 C -0.241 4.241 8 H 0.085 0.915 9 N -0.724 5.724 10 C 0.163 3.837 11 H 0.077 0.923 12 C -0.130 4.130 13 C 0.110 3.890 14 N -0.604 5.604 15 C 0.565 3.435 16 O -0.577 6.577 17 C -0.121 4.121 18 C -0.146 4.146 19 C -0.084 4.084 20 C -0.108 4.108 21 C 0.143 3.857 22 N -0.504 5.504 23 C 0.065 3.935 24 C -0.146 4.146 25 C -0.051 4.051 26 C -0.051 4.051 27 C 0.075 3.925 28 H 0.250 0.750 29 H 0.376 0.624 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.171 0.829 35 H 0.163 0.837 36 H 0.191 0.809 37 H 0.181 0.819 38 H 0.164 0.836 39 H 0.146 0.854 40 H 0.072 0.928 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.311 -11.741 10.515 18.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.261 4.261 3 Si 0.796 3.204 4 H -0.219 1.219 5 H -0.229 1.229 6 H -0.188 1.188 7 C -0.373 4.373 8 H 0.103 0.897 9 N -0.363 5.363 10 C 0.053 3.947 11 H 0.094 0.906 12 C -0.168 4.168 13 C -0.012 4.012 14 N -0.336 5.336 15 C 0.356 3.644 16 O -0.459 6.459 17 C -0.125 4.125 18 C -0.163 4.163 19 C -0.103 4.103 20 C -0.110 4.110 21 C -0.029 4.029 22 N -0.212 5.212 23 C -0.077 4.077 24 C -0.166 4.166 25 C -0.056 4.056 26 C -0.070 4.070 27 C -0.050 4.050 28 H 0.059 0.941 29 H 0.208 0.792 30 H 0.120 0.880 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.188 0.812 35 H 0.181 0.819 36 H 0.208 0.792 37 H 0.198 0.802 38 H 0.181 0.819 39 H 0.164 0.836 40 H 0.090 0.910 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.666 -12.032 11.365 19.167 hybrid contribution -0.704 0.613 -0.881 1.284 sum 8.962 -11.418 10.484 17.906 Atomic orbital electron populations 1.69807 1.06685 1.26035 1.59226 1.25492 0.96144 1.00926 1.03534 0.85248 0.78023 0.79901 0.77229 1.21910 1.22859 1.18823 1.19653 0.91730 0.84693 1.41207 0.89706 1.42531 1.05492 1.00451 1.87852 1.21521 0.95525 0.85371 0.92309 0.90553 1.23050 0.99037 0.93095 1.01655 1.22331 0.99875 0.97096 0.81899 1.48427 1.65801 1.09075 1.10305 1.18261 0.77946 0.85265 0.82962 1.90714 1.53949 1.16829 1.84434 1.19955 1.03278 0.94899 0.94349 1.22723 0.97922 0.94129 1.01535 1.21270 0.96606 1.01376 0.91082 1.19434 1.00815 0.93621 0.97145 1.23698 0.91402 1.01255 0.86511 1.67460 1.16291 1.07265 1.30218 1.22660 0.96147 0.90164 0.98744 1.22241 0.99351 1.02317 0.92646 1.18353 0.98762 0.93503 0.94982 1.21456 0.94433 1.00569 0.90549 1.23524 1.01350 0.78556 1.01592 0.94118 0.79164 0.87952 0.91531 0.89407 0.90546 0.81245 0.81908 0.79185 0.80207 0.81856 0.83596 0.90963 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -55.34 13.06 21.65 0.28 -55.06 16 2 C -0.07 -3.58 5.50 84.86 0.47 -3.12 16 3 Si 0.97 42.52 29.55 68.60 2.03 44.55 16 4 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 7 C -0.24 -11.79 9.98 84.03 0.84 -10.96 16 8 H 0.09 3.88 7.83 -2.91 -0.02 3.86 16 9 N -0.72 -31.77 5.18 -316.84 -1.64 -33.41 16 10 C 0.16 5.37 3.59 46.28 0.17 5.54 16 11 H 0.08 2.43 8.12 -2.39 -0.02 2.41 16 12 C -0.13 -3.58 6.72 32.09 0.22 -3.36 16 13 C 0.11 2.88 6.93 86.86 0.60 3.48 16 14 N -0.60 -17.98 3.33 -838.88 -2.79 -20.77 16 15 C 0.56 18.21 7.80 86.80 0.68 18.88 16 16 O -0.58 -21.30 16.56 -3.88 -0.06 -21.37 16 17 C -0.12 -3.44 5.87 -20.08 -0.12 -3.56 16 18 C -0.15 -3.81 8.50 22.29 0.19 -3.62 16 19 C -0.08 -1.87 9.77 22.27 0.22 -1.65 16 20 C -0.11 -2.42 5.75 -21.26 -0.12 -2.54 16 21 C 0.14 2.80 11.04 85.33 0.94 3.74 16 22 N -0.50 -10.70 10.29 -195.51 -2.01 -12.71 16 23 C 0.07 1.16 11.07 84.11 0.93 2.09 16 24 C -0.15 -2.66 9.88 22.42 0.22 -2.44 16 25 C -0.05 -1.18 5.74 -21.29 -0.12 -1.30 16 26 C -0.05 -1.31 9.38 22.79 0.21 -1.09 16 27 C 0.07 2.26 4.61 86.73 0.40 2.65 16 28 H 0.25 14.07 8.31 -92.70 -0.77 13.30 16 29 H 0.38 18.22 7.72 -92.71 -0.72 17.50 16 30 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.07 2.00 8.01 -2.39 -0.02 1.98 16 32 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.08 2.03 7.98 -2.39 -0.02 2.01 16 34 H 0.17 4.60 2.64 -11.97 -0.03 4.57 16 35 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 36 H 0.19 2.55 8.06 -2.91 -0.02 2.52 16 37 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 39 H 0.15 3.53 7.64 -2.91 -0.02 3.51 16 40 H 0.07 2.43 6.61 -2.39 -0.02 2.42 16 41 H 0.08 2.34 6.73 -2.39 -0.02 2.33 16 Total: -1.00 -65.42 341.52 1.86 -63.57 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: 0.34 Total: 32.45 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 5.72 Total: 2.76 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -6.16 Total: -121.95 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.06 Total: -21.37 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -65.42 1.86 -63.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970412068.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.224 kcal (2) G-P(sol) polarization free energy of solvation -65.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds