Wall clock time and date at job start Fri Apr 10 2020 22:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00269 * 2 1 4 4 H 1.48501 * 109.47288 * 270.00205 * 3 2 1 5 5 H 1.48504 * 109.47255 * 29.99802 * 3 2 1 6 6 H 1.48504 * 109.47401 * 150.00150 * 3 2 1 7 7 C 1.38816 * 119.99648 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99613 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00275 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00002 * 180.02562 * 9 7 2 11 11 H 1.09008 * 110.77431 * 323.20667 * 10 9 7 12 12 C 1.55446 * 110.70666 * 199.99912 * 10 9 7 13 13 C 1.54902 * 101.45262 * 206.13973 * 12 10 9 14 14 N 1.47429 * 104.92996 * 37.00471 * 13 12 10 15 15 C 1.34771 * 125.65321 * 155.79690 * 14 13 12 16 16 O 1.21569 * 119.99692 * 354.14820 * 15 14 13 17 17 C 1.47771 * 120.00376 * 174.15168 * 15 14 13 18 18 C 1.40659 * 119.69794 * 7.37484 * 17 15 14 19 19 C 1.35848 * 120.87671 * 180.02562 * 18 17 15 20 20 C 1.40395 * 119.84732 * 359.97438 * 19 18 17 21 21 C 1.40636 * 121.98009 * 180.02562 * 20 19 18 22 22 C 1.36218 * 118.73087 * 179.97438 * 21 20 19 23 23 N 1.32596 * 121.90072 * 359.97438 * 22 21 20 24 24 C 1.31238 * 122.74216 * 0.02562 * 23 22 21 25 25 C 1.40547 * 119.88702 * 359.97438 * 24 23 22 26 26 C 1.38559 * 119.70482 * 187.10517 * 17 15 14 27 27 C 1.47032 * 108.69921 * 335.81460 * 14 13 12 28 28 H 0.96996 * 119.99817 * 359.97438 * 1 2 3 29 29 H 0.96995 * 119.99555 * 359.97438 * 9 7 2 30 30 H 1.09004 * 111.11636 * 88.08247 * 12 10 9 31 31 H 1.09001 * 111.01101 * 324.15204 * 12 10 9 32 32 H 1.09004 * 110.37003 * 278.11484 * 13 12 10 33 33 H 1.08999 * 110.36570 * 155.89367 * 13 12 10 34 34 H 1.08001 * 119.56176 * 0.02562 * 18 17 15 35 35 H 1.07999 * 120.07729 * 179.97438 * 19 18 17 36 36 H 1.07996 * 120.63394 * 359.95010 * 21 20 19 37 37 H 1.08003 * 119.04877 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.05585 * 180.02562 * 24 23 22 39 39 H 1.08007 * 120.34294 * 0.02562 * 26 17 15 40 40 H 1.09002 * 109.87819 * 120.47866 * 27 14 13 41 41 H 1.08996 * 109.87991 * 241.64510 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0017 11 1 2.9586 -3.5839 -0.6081 12 6 1.1498 -4.8162 -0.4958 13 6 1.8010 -6.0373 0.2002 14 7 2.2218 -5.5408 1.5230 15 6 2.4056 -6.2964 2.6237 16 8 2.1203 -7.4780 2.6043 17 6 2.9539 -5.6888 3.8541 18 6 3.1359 -4.2957 3.9220 19 6 3.6386 -3.7120 5.0409 20 6 3.9825 -4.5041 6.1479 21 6 4.5057 -3.9471 7.3285 22 6 4.8163 -4.7775 8.3627 23 7 4.6387 -6.0893 8.2856 24 6 4.1556 -6.6786 7.2171 25 6 3.8029 -5.9117 6.0934 26 6 3.2789 -6.4959 4.9325 27 6 2.4074 -4.0844 1.4427 28 1 -0.4850 0.8400 0.0004 29 1 0.3555 -2.3880 0.0005 30 1 1.1965 -4.9139 -1.5805 31 1 0.1216 -4.6783 -0.1615 32 1 2.6651 -6.3817 -0.3681 33 1 1.0749 -6.8427 0.3108 34 1 2.8725 -3.6820 3.0732 35 1 3.7733 -2.6411 5.0789 36 1 4.6586 -2.8814 7.4135 37 1 5.2188 -4.3553 9.2716 38 1 4.0285 -7.7510 7.2016 39 1 3.1337 -7.5648 4.8773 40 1 1.7425 -3.5866 2.1486 41 1 3.4439 -3.8301 1.6638 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970419906.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:41 Heat of formation + Delta-G solvation = 61.587769 kcal Electronic energy + Delta-G solvation = -24758.839182 eV Core-core repulsion = 21218.817295 eV Total energy + Delta-G solvation = -3540.021887 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 3.02 seconds Orbital eigenvalues (eV) -41.10290 -39.92353 -37.56985 -36.98835 -34.20697 -33.13924 -32.20552 -31.27714 -29.95306 -29.54789 -27.76748 -25.21217 -24.37193 -23.66333 -22.67401 -22.17302 -20.44729 -19.93969 -18.48363 -17.42373 -17.30143 -16.83158 -16.10322 -15.72165 -15.35690 -15.04735 -14.76160 -14.38591 -14.22447 -13.99723 -13.68657 -13.58661 -13.51091 -13.31825 -12.93850 -12.58715 -12.40069 -12.06332 -11.78591 -11.60372 -11.45372 -11.01586 -10.89829 -10.56706 -10.42932 -10.38196 -10.16807 -10.00999 -9.85095 -9.64886 -9.24129 -9.08334 -8.54575 -8.19514 -7.20795 -5.94955 -3.26942 0.06221 0.59188 1.64392 2.49666 3.06214 3.30681 3.32446 3.38151 3.40042 3.93853 4.17903 4.33793 4.41965 4.48143 4.55066 4.66338 4.89400 4.94124 4.98861 5.04041 5.17673 5.25989 5.40734 5.45365 5.51410 5.53380 5.59562 5.69927 5.73155 5.81295 5.87855 5.97852 6.07627 6.14372 6.20489 6.27929 6.36097 6.40222 6.43736 6.62128 6.69792 7.53010 7.62899 7.73748 8.19648 8.22758 9.34394 9.87134 10.21858 11.26695 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.012754 B = 0.003862 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.895503 B = 7248.195203 C = 9211.676429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.005 4.005 3 Si 0.908 3.092 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.255 4.255 8 H 0.073 0.927 9 N -0.713 5.713 10 C 0.170 3.830 11 H 0.069 0.931 12 C -0.141 4.141 13 C 0.109 3.891 14 N -0.605 5.605 15 C 0.570 3.430 16 O -0.549 6.549 17 C -0.126 4.126 18 C -0.110 4.110 19 C -0.118 4.118 20 C -0.009 4.009 21 C -0.158 4.158 22 C 0.078 3.922 23 N -0.495 5.495 24 C 0.156 3.844 25 C -0.126 4.126 26 C -0.024 4.024 27 C 0.060 3.940 28 H 0.258 0.742 29 H 0.388 0.612 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.178 0.822 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.153 0.847 38 H 0.165 0.835 39 H 0.146 0.854 40 H 0.086 0.914 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.624 -10.261 9.609 15.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.738 3.262 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.385 4.385 8 H 0.091 0.909 9 N -0.353 5.353 10 C 0.058 3.942 11 H 0.086 0.914 12 C -0.180 4.180 13 C -0.013 4.013 14 N -0.338 5.338 15 C 0.360 3.640 16 O -0.429 6.429 17 C -0.129 4.129 18 C -0.128 4.128 19 C -0.136 4.136 20 C -0.014 4.014 21 C -0.178 4.178 22 C -0.064 4.064 23 N -0.203 5.203 24 C -0.016 4.016 25 C -0.128 4.128 26 C -0.045 4.045 27 C -0.066 4.066 28 H 0.068 0.932 29 H 0.223 0.777 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.195 0.805 35 H 0.156 0.844 36 H 0.158 0.842 37 H 0.170 0.830 38 H 0.182 0.818 39 H 0.164 0.836 40 H 0.104 0.896 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.854 -11.103 10.441 17.146 hybrid contribution -0.056 1.663 -0.601 1.769 sum 7.798 -9.440 9.840 15.708 Atomic orbital electron populations 1.69655 1.05205 1.26080 1.56447 1.24779 0.95489 0.97873 1.02098 0.86202 0.78697 0.83616 0.77688 1.21524 1.21669 1.20591 1.19244 0.91109 0.83866 1.44319 0.90857 1.42394 1.05885 0.99343 1.87671 1.21313 0.95156 0.86508 0.91241 0.91355 1.23132 1.00218 0.94129 1.00506 1.22223 0.99114 0.97515 0.82462 1.48388 1.66308 1.09234 1.09847 1.17902 0.78261 0.85534 0.82346 1.90745 1.52531 1.15710 1.83937 1.19924 1.03852 0.94187 0.94905 1.22920 0.94553 0.94710 1.00607 1.21003 1.00109 1.00228 0.92271 1.18382 0.95651 0.92699 0.94672 1.21967 1.00739 1.01542 0.93515 1.22218 0.96895 0.88810 0.98519 1.67461 1.13368 1.12481 1.26974 1.23273 0.91255 1.00041 0.87003 1.18975 1.03421 0.93896 0.96511 1.21393 0.92526 1.00492 0.90058 1.23820 1.00864 0.78551 1.03334 0.93218 0.77748 0.89795 0.90437 0.91410 0.90567 0.80530 0.84396 0.84241 0.82996 0.81767 0.83644 0.89614 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.06 13.06 55.49 0.72 -25.34 16 2 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 20.75 29.55 -169.99 -5.02 15.73 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.25 -6.33 9.98 -15.06 -0.15 -6.48 16 8 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 9 N -0.71 -15.76 5.18 -51.50 -0.27 -16.02 16 10 C 0.17 2.90 3.59 -65.94 -0.24 2.67 16 11 H 0.07 1.16 8.12 -51.92 -0.42 0.74 16 12 C -0.14 -2.03 6.72 -24.43 -0.16 -2.19 16 13 C 0.11 1.50 6.93 -2.53 -0.02 1.48 16 14 N -0.61 -9.20 3.33 -179.31 -0.60 -9.80 16 15 C 0.57 9.18 7.80 -12.37 -0.10 9.08 16 16 O -0.55 -10.04 16.55 5.30 0.09 -9.95 16 17 C -0.13 -1.79 5.87 -104.97 -0.62 -2.41 16 18 C -0.11 -1.48 8.50 -39.52 -0.34 -1.82 16 19 C -0.12 -1.45 9.77 -39.63 -0.39 -1.84 16 20 C -0.01 -0.11 5.75 -106.74 -0.61 -0.72 16 21 C -0.16 -1.62 9.87 -39.40 -0.39 -2.01 16 22 C 0.08 0.80 11.07 -17.95 -0.20 0.60 16 23 N -0.49 -5.78 10.30 -13.12 -0.14 -5.91 16 24 C 0.16 1.69 11.05 -16.94 -0.19 1.50 16 25 C -0.13 -1.53 5.74 -106.87 -0.61 -2.14 16 26 C -0.02 -0.30 9.37 -38.75 -0.36 -0.66 16 27 C 0.06 0.93 4.61 -3.06 -0.01 0.91 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.39 9.28 7.72 -40.82 -0.32 8.97 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.08 1.18 8.01 -51.93 -0.42 0.76 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.05 7.98 -51.93 -0.41 0.63 16 34 H 0.18 2.47 2.64 -62.31 -0.16 2.30 16 35 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.17 1.29 8.06 -52.48 -0.42 0.86 16 39 H 0.15 1.67 7.63 -52.48 -0.40 1.27 16 40 H 0.09 1.45 6.60 -51.93 -0.34 1.10 16 41 H 0.07 1.03 6.73 -51.93 -0.35 0.68 16 LS Contribution 341.49 15.07 5.15 5.15 Total: -1.00 -30.49 341.49 -9.45 -39.94 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -4.91 Total: 10.46 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -4.48 Total: -4.26 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.27 Total: -57.07 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.49 -9.45 -39.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970419906.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.531 kcal (2) G-P(sol) polarization free energy of solvation -30.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.02 seconds