Wall clock time and date at job start Fri Apr 10 2020 22:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00269 * 2 1 4 4 H 1.48501 * 109.47288 * 270.00205 * 3 2 1 5 5 H 1.48504 * 109.47255 * 29.99802 * 3 2 1 6 6 H 1.48504 * 109.47401 * 150.00150 * 3 2 1 7 7 C 1.38816 * 119.99648 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99613 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00275 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00002 * 180.02562 * 9 7 2 11 11 H 1.09008 * 110.77431 * 323.20667 * 10 9 7 12 12 C 1.55446 * 110.70666 * 199.99912 * 10 9 7 13 13 C 1.54902 * 101.45262 * 206.13973 * 12 10 9 14 14 N 1.47429 * 104.92996 * 37.00471 * 13 12 10 15 15 C 1.34771 * 125.65321 * 155.79690 * 14 13 12 16 16 O 1.21569 * 119.99692 * 354.14820 * 15 14 13 17 17 C 1.47771 * 120.00376 * 174.15168 * 15 14 13 18 18 C 1.40659 * 119.69794 * 7.37484 * 17 15 14 19 19 C 1.35848 * 120.87671 * 180.02562 * 18 17 15 20 20 C 1.40395 * 119.84732 * 359.97438 * 19 18 17 21 21 C 1.40636 * 121.98009 * 180.02562 * 20 19 18 22 22 C 1.36218 * 118.73087 * 179.97438 * 21 20 19 23 23 N 1.32596 * 121.90072 * 359.97438 * 22 21 20 24 24 C 1.31238 * 122.74216 * 0.02562 * 23 22 21 25 25 C 1.40547 * 119.88702 * 359.97438 * 24 23 22 26 26 C 1.38559 * 119.70482 * 187.10517 * 17 15 14 27 27 C 1.47032 * 108.69921 * 335.81460 * 14 13 12 28 28 H 0.96996 * 119.99817 * 359.97438 * 1 2 3 29 29 H 0.96995 * 119.99555 * 359.97438 * 9 7 2 30 30 H 1.09004 * 111.11636 * 88.08247 * 12 10 9 31 31 H 1.09001 * 111.01101 * 324.15204 * 12 10 9 32 32 H 1.09004 * 110.37003 * 278.11484 * 13 12 10 33 33 H 1.08999 * 110.36570 * 155.89367 * 13 12 10 34 34 H 1.08001 * 119.56176 * 0.02562 * 18 17 15 35 35 H 1.07999 * 120.07729 * 179.97438 * 19 18 17 36 36 H 1.07996 * 120.63394 * 359.95010 * 21 20 19 37 37 H 1.08003 * 119.04877 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.05585 * 180.02562 * 24 23 22 39 39 H 1.08007 * 120.34294 * 0.02562 * 26 17 15 40 40 H 1.09002 * 109.87819 * 120.47866 * 27 14 13 41 41 H 1.08996 * 109.87991 * 241.64510 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0017 11 1 2.9586 -3.5839 -0.6081 12 6 1.1498 -4.8162 -0.4958 13 6 1.8010 -6.0373 0.2002 14 7 2.2218 -5.5408 1.5230 15 6 2.4056 -6.2964 2.6237 16 8 2.1203 -7.4780 2.6043 17 6 2.9539 -5.6888 3.8541 18 6 3.1359 -4.2957 3.9220 19 6 3.6386 -3.7120 5.0409 20 6 3.9825 -4.5041 6.1479 21 6 4.5057 -3.9471 7.3285 22 6 4.8163 -4.7775 8.3627 23 7 4.6387 -6.0893 8.2856 24 6 4.1556 -6.6786 7.2171 25 6 3.8029 -5.9117 6.0934 26 6 3.2789 -6.4959 4.9325 27 6 2.4074 -4.0844 1.4427 28 1 -0.4850 0.8400 0.0004 29 1 0.3555 -2.3880 0.0005 30 1 1.1965 -4.9139 -1.5805 31 1 0.1216 -4.6783 -0.1615 32 1 2.6651 -6.3817 -0.3681 33 1 1.0749 -6.8427 0.3108 34 1 2.8725 -3.6820 3.0732 35 1 3.7733 -2.6411 5.0789 36 1 4.6586 -2.8814 7.4135 37 1 5.2188 -4.3553 9.2716 38 1 4.0285 -7.7510 7.2016 39 1 3.1337 -7.5648 4.8773 40 1 1.7425 -3.5866 2.1486 41 1 3.4439 -3.8301 1.6638 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970419906.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:37 Heat of formation + Delta-G solvation = 43.422859 kcal Electronic energy + Delta-G solvation = -24759.626872 eV Core-core repulsion = 21218.817295 eV Total energy + Delta-G solvation = -3540.809577 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.07318 -41.04744 -38.83782 -38.01872 -35.88773 -34.02760 -33.51681 -32.68214 -31.06294 -30.63991 -29.19837 -26.42841 -25.65335 -24.89735 -23.75469 -23.20791 -21.80158 -21.08312 -19.53076 -19.17994 -18.29575 -17.87311 -17.37065 -16.89666 -16.40576 -16.31683 -16.00141 -15.59757 -15.28539 -15.22023 -15.01608 -14.79070 -14.57757 -14.48383 -14.26059 -13.76697 -13.59058 -13.20676 -13.05436 -12.90639 -12.79070 -12.49044 -12.36909 -12.12541 -11.81600 -11.71258 -11.61850 -11.27416 -11.22380 -10.89954 -10.51774 -10.21193 -9.76302 -9.11889 -9.04885 -7.92852 -5.23088 -0.84612 -0.35530 0.73892 1.45547 1.52516 1.53437 1.61154 1.87617 2.25555 2.58532 3.02379 3.24566 3.38313 3.43667 3.56122 3.64136 3.76020 3.82950 3.87325 3.90038 4.01585 4.03509 4.27619 4.31244 4.37266 4.53499 4.61863 4.65167 4.66791 4.77391 4.81023 4.85408 4.92190 4.96812 5.11894 5.14494 5.24542 5.33391 5.38032 5.57448 5.58696 5.69114 6.27427 6.38454 6.91922 6.97017 7.35919 8.06957 8.30494 9.30009 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.012754 B = 0.003862 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.895503 B = 7248.195203 C = 9211.676429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.068 4.068 3 Si 0.966 3.034 4 H -0.291 1.291 5 H -0.301 1.301 6 H -0.265 1.265 7 C -0.242 4.242 8 H 0.084 0.916 9 N -0.724 5.724 10 C 0.163 3.837 11 H 0.076 0.924 12 C -0.130 4.130 13 C 0.110 3.890 14 N -0.606 5.606 15 C 0.567 3.433 16 O -0.577 6.577 17 C -0.148 4.148 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.021 4.021 21 C -0.159 4.159 22 C 0.076 3.924 23 N -0.511 5.511 24 C 0.156 3.844 25 C -0.138 4.138 26 C -0.016 4.016 27 C 0.075 3.925 28 H 0.250 0.750 29 H 0.376 0.624 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.170 0.830 35 H 0.155 0.845 36 H 0.165 0.835 37 H 0.181 0.819 38 H 0.190 0.810 39 H 0.154 0.846 40 H 0.071 0.929 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.476 -10.555 10.698 17.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.261 4.261 3 Si 0.796 3.204 4 H -0.218 1.218 5 H -0.228 1.228 6 H -0.189 1.189 7 C -0.373 4.373 8 H 0.102 0.898 9 N -0.363 5.363 10 C 0.053 3.947 11 H 0.094 0.906 12 C -0.168 4.168 13 C -0.011 4.011 14 N -0.338 5.338 15 C 0.358 3.642 16 O -0.459 6.459 17 C -0.151 4.151 18 C -0.139 4.139 19 C -0.135 4.135 20 C -0.026 4.026 21 C -0.179 4.179 22 C -0.066 4.066 23 N -0.220 5.220 24 C -0.016 4.016 25 C -0.140 4.140 26 C -0.037 4.037 27 C -0.050 4.050 28 H 0.059 0.941 29 H 0.208 0.792 30 H 0.120 0.880 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.186 0.814 35 H 0.173 0.827 36 H 0.183 0.817 37 H 0.198 0.802 38 H 0.207 0.793 39 H 0.171 0.829 40 H 0.089 0.911 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.755 -11.432 11.525 18.939 hybrid contribution -0.566 1.651 -0.842 1.938 sum 9.189 -9.781 10.683 17.153 Atomic orbital electron populations 1.69805 1.06672 1.26052 1.59206 1.25492 0.96149 1.00919 1.03522 0.85249 0.77978 0.79906 0.77268 1.21829 1.22821 1.18920 1.19654 0.91712 0.84729 1.41245 0.89766 1.42529 1.05496 1.00455 1.87857 1.21523 0.95542 0.85388 0.92292 0.90585 1.23047 0.99028 0.93108 1.01650 1.22319 0.99882 0.97052 0.81896 1.48420 1.66076 1.08967 1.10329 1.18198 0.77823 0.85252 0.82878 1.90718 1.53974 1.16765 1.84449 1.19869 1.05668 0.94724 0.94792 1.22785 0.95700 0.94340 1.01040 1.21200 0.99353 1.01125 0.91846 1.18658 0.95729 0.92886 0.95369 1.22249 1.00065 1.02957 0.92600 1.22741 0.95921 0.88413 0.99513 1.67545 1.13778 1.13404 1.27229 1.23676 0.90389 1.01216 0.86273 1.19132 1.03800 0.94322 0.96732 1.21514 0.91607 1.00810 0.89806 1.23497 1.01177 0.78722 1.01560 0.94097 0.79157 0.87963 0.91540 0.89438 0.90492 0.81367 0.82723 0.81703 0.80199 0.79297 0.82853 0.91113 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -55.47 13.06 21.65 0.28 -55.19 16 2 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 3 Si 0.97 42.66 29.55 68.60 2.03 44.68 16 4 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 5 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 7 C -0.24 -11.89 9.98 84.03 0.84 -11.05 16 8 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 9 N -0.72 -31.96 5.18 -316.84 -1.64 -33.60 16 10 C 0.16 5.41 3.59 46.28 0.17 5.57 16 11 H 0.08 2.44 8.12 -2.38 -0.02 2.42 16 12 C -0.13 -3.59 6.72 32.09 0.22 -3.38 16 13 C 0.11 2.89 6.93 86.85 0.60 3.49 16 14 N -0.61 -18.05 3.33 -839.48 -2.79 -20.85 16 15 C 0.57 18.14 7.80 86.77 0.68 18.82 16 16 O -0.58 -20.99 16.55 -3.93 -0.07 -21.06 16 17 C -0.15 -4.17 5.87 -20.09 -0.12 -4.29 16 18 C -0.12 -3.20 8.50 22.31 0.19 -3.01 16 19 C -0.12 -2.73 9.77 22.24 0.22 -2.51 16 20 C -0.02 -0.48 5.75 -21.23 -0.12 -0.60 16 21 C -0.16 -2.84 9.87 22.38 0.22 -2.62 16 22 C 0.08 1.35 11.07 84.11 0.93 2.28 16 23 N -0.51 -10.76 10.30 -195.41 -2.01 -12.77 16 24 C 0.16 3.08 11.05 85.34 0.94 4.02 16 25 C -0.14 -3.15 5.74 -21.32 -0.12 -3.27 16 26 C -0.02 -0.41 9.37 22.81 0.21 -0.19 16 27 C 0.08 2.30 4.61 86.72 0.40 2.70 16 28 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 29 H 0.38 18.30 7.72 -92.71 -0.72 17.59 16 30 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 31 H 0.07 2.01 8.01 -2.39 -0.02 1.99 16 32 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.08 2.04 7.98 -2.39 -0.02 2.02 16 34 H 0.17 4.67 2.64 -12.14 -0.03 4.64 16 35 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 36 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 37 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 38 H 0.19 2.56 8.06 -2.91 -0.02 2.54 16 39 H 0.15 3.42 7.63 -2.91 -0.02 3.40 16 40 H 0.07 2.41 6.60 -2.39 -0.02 2.39 16 41 H 0.08 2.33 6.73 -2.39 -0.02 2.31 16 Total: -1.00 -65.23 341.49 1.85 -63.37 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: 0.34 Total: 32.56 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 5.72 Total: 2.84 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -6.16 Total: -122.40 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.07 Total: -21.06 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -65.23 1.85 -63.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970419906.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.796 kcal (2) G-P(sol) polarization free energy of solvation -65.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds