Wall clock time and date at job start Fri Apr 10 2020 22:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00175 * 2 1 4 4 H 1.48496 * 109.47469 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47037 * 300.00511 * 3 2 1 6 6 H 1.48504 * 109.46746 * 60.00220 * 3 2 1 7 7 C 1.38813 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99794 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00323 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00136 * 180.02562 * 9 7 2 11 11 H 1.09008 * 110.77876 * 323.21272 * 10 9 7 12 12 C 1.55158 * 110.72016 * 199.98117 * 10 9 7 13 13 C 1.55129 * 101.48606 * 205.96738 * 12 10 9 14 14 N 1.47427 * 104.71872 * 37.29347 * 13 12 10 15 15 C 1.34782 * 125.64746 * 155.82429 * 14 13 12 16 16 O 1.21502 * 120.00172 * 179.68789 * 15 14 13 17 17 C 1.48273 * 119.99653 * 359.68276 * 15 14 13 18 18 C 1.40286 * 119.23890 * 180.02562 * 17 15 14 19 19 C 1.36502 * 119.81630 * 180.25438 * 18 17 15 20 20 C 1.40760 * 118.24152 * 359.51179 * 19 18 17 21 21 C 1.40418 * 121.27690 * 180.21957 * 20 19 18 22 22 C 1.36132 * 119.65096 * 180.24866 * 21 20 19 23 23 C 1.39434 * 120.91550 * 359.97438 * 22 21 20 24 24 C 1.35997 * 121.08153 * 359.97438 * 23 22 21 25 25 C 1.40822 * 119.73757 * 0.02562 * 24 23 22 26 26 N 1.31880 * 119.24173 * 359.97438 * 17 15 14 27 27 C 1.47021 * 108.70473 * 335.54902 * 14 13 12 28 28 H 0.96996 * 119.99713 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99367 * 0.02562 * 9 7 2 30 30 H 1.09002 * 111.00059 * 324.20724 * 12 10 9 31 31 H 1.09002 * 111.00580 * 88.05606 * 12 10 9 32 32 H 1.08998 * 110.49775 * 278.45598 * 13 12 10 33 33 H 1.08999 * 110.34118 * 156.05234 * 13 12 10 34 34 H 1.08002 * 120.08768 * 359.96914 * 18 17 15 35 35 H 1.08001 * 120.87563 * 179.74538 * 19 18 17 36 36 H 1.08004 * 120.17679 * 0.26697 * 21 20 19 37 37 H 1.07996 * 119.54262 * 179.97438 * 22 21 20 38 38 H 1.07997 * 119.45797 * 180.02562 * 23 22 21 39 39 H 1.07999 * 120.12952 * 180.02562 * 24 23 22 40 40 H 1.09004 * 109.87981 * 120.71066 * 27 14 13 41 41 H 1.09000 * 109.88266 * 241.71547 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9583 -3.5836 -0.6109 12 6 1.1514 -4.8142 -0.4964 13 6 1.8067 -6.0382 0.1956 14 7 2.2230 -5.5413 1.5198 15 6 2.4087 -6.2977 2.6198 16 8 2.7595 -5.7796 3.6613 17 6 2.1846 -7.7622 2.5589 18 6 2.3821 -8.5342 3.7135 19 6 2.1843 -9.8841 3.6694 20 6 1.7735 -10.4576 2.4513 21 6 1.5471 -11.8386 2.3355 22 6 1.1553 -12.3588 1.1400 23 6 0.9747 -11.5391 0.0267 24 6 1.1835 -10.1973 0.1014 25 6 1.5895 -9.6204 1.3202 26 7 1.8034 -8.3088 1.4209 27 6 2.4085 -4.0851 1.4400 28 1 -0.4849 0.8400 0.0004 29 1 0.3556 -2.3880 -0.0005 30 1 0.1233 -4.6759 -0.1617 31 1 1.1980 -4.9096 -1.5813 32 1 2.6731 -6.3786 -0.3713 33 1 1.0820 -6.8451 0.3039 34 1 2.6942 -8.0623 4.6335 35 1 2.3352 -10.4953 4.5469 36 1 1.6827 -12.4846 3.1903 37 1 0.9821 -13.4212 1.0528 38 1 0.6630 -11.9767 -0.9102 39 1 1.0386 -9.5767 -0.7705 40 1 1.7441 -3.5875 2.1466 41 1 3.4445 -3.8305 1.6634 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970551326.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:48 Heat of formation + Delta-G solvation = 50.441634 kcal Electronic energy + Delta-G solvation = -24561.201564 eV Core-core repulsion = 21020.696344 eV Total energy + Delta-G solvation = -3540.505220 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 2.99 seconds Orbital eigenvalues (eV) -41.25796 -39.56079 -37.52693 -36.87313 -34.25955 -33.73323 -31.63818 -30.87490 -30.32316 -29.48664 -27.57631 -25.47213 -24.13313 -23.56362 -22.61008 -22.23153 -20.44637 -19.59888 -18.26438 -17.78545 -17.40261 -16.91735 -16.05554 -15.72153 -15.31053 -14.90962 -14.77051 -14.53373 -14.39183 -13.92924 -13.58551 -13.46422 -13.36310 -13.15033 -12.69569 -12.56304 -12.02936 -11.98560 -11.80511 -11.75805 -11.47721 -11.09578 -10.90389 -10.82085 -10.72197 -10.38089 -10.14825 -9.93639 -9.72310 -9.40206 -9.10288 -8.97268 -8.62117 -8.25750 -7.05377 -5.81076 -3.11595 -0.07097 0.39482 1.63934 2.26920 3.09730 3.17915 3.42963 3.49024 3.50993 3.83587 3.88694 4.22347 4.41309 4.48020 4.56375 4.58680 4.77231 4.81462 4.99740 5.11887 5.13527 5.31928 5.42336 5.47207 5.59981 5.63328 5.69141 5.74057 5.79731 5.95014 5.99653 6.05740 6.11508 6.17725 6.23156 6.38209 6.45218 6.47201 6.60537 6.73332 6.93205 7.43927 7.68577 7.77777 8.29756 8.36897 9.48589 10.02574 10.37467 11.41143 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.028746 B = 0.002774 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.802798 B =10089.701785 C =10816.227663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.246 4.246 8 H 0.073 0.927 9 N -0.713 5.713 10 C 0.171 3.829 11 H 0.066 0.934 12 C -0.144 4.144 13 C 0.105 3.895 14 N -0.587 5.587 15 C 0.570 3.430 16 O -0.538 6.538 17 C 0.129 3.871 18 C -0.124 4.124 19 C -0.064 4.064 20 C -0.091 4.091 21 C -0.101 4.101 22 C -0.111 4.111 23 C -0.106 4.106 24 C -0.084 4.084 25 C 0.121 3.879 26 N -0.436 5.436 27 C 0.080 3.920 28 H 0.256 0.744 29 H 0.387 0.613 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.140 0.860 40 H 0.075 0.925 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.258 -27.885 1.763 28.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.091 0.909 9 N -0.353 5.353 10 C 0.059 3.941 11 H 0.083 0.917 12 C -0.183 4.183 13 C -0.018 4.018 14 N -0.318 5.318 15 C 0.356 3.644 16 O -0.415 6.415 17 C -0.024 4.024 18 C -0.145 4.145 19 C -0.090 4.090 20 C -0.093 4.093 21 C -0.120 4.120 22 C -0.129 4.129 23 C -0.126 4.126 24 C -0.102 4.102 25 C -0.003 4.003 26 N -0.148 5.148 27 C -0.045 4.045 28 H 0.066 0.934 29 H 0.221 0.779 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.169 0.831 35 H 0.163 0.837 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.158 0.842 40 H 0.094 0.906 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.427 -26.964 1.555 27.117 hybrid contribution 0.261 0.393 0.826 0.951 sum 2.688 -26.571 2.381 26.812 Atomic orbital electron populations 1.69673 1.05166 1.25753 1.57192 1.24776 0.95532 0.97851 1.02494 0.86101 0.78865 0.83924 0.77193 1.20437 1.21808 1.21777 1.19314 0.91158 0.83944 1.43308 0.90877 1.42392 1.05828 0.99453 1.87637 1.21218 0.94958 0.86429 0.91466 0.91655 1.23174 1.00136 0.94633 1.00370 1.22698 0.99707 0.97320 0.82120 1.48422 1.64134 1.09348 1.09929 1.17570 0.79093 0.84525 0.83213 1.90783 1.48380 1.72847 1.29531 1.21473 0.96344 0.94808 0.89821 1.21772 0.98993 0.93967 0.99724 1.21457 0.95736 0.94790 0.96987 1.18991 1.00707 0.95046 0.94544 1.20996 0.99305 0.93203 0.98465 1.20992 0.98722 1.00318 0.92829 1.20939 0.99172 0.93403 0.99069 1.20915 0.98026 0.95096 0.96177 1.18988 0.98699 0.88807 0.93761 1.68213 1.10003 1.11268 1.25335 1.23341 1.01374 0.77266 1.02470 0.93429 0.77855 0.90675 0.90136 0.91677 0.88229 0.83130 0.83723 0.85133 0.85442 0.85087 0.84247 0.90649 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.25 -6.76 9.98 -15.06 -0.15 -6.91 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 N -0.71 -17.64 5.18 -51.65 -0.27 -17.90 16 10 C 0.17 3.38 3.59 -66.10 -0.24 3.14 16 11 H 0.07 1.27 8.13 -51.92 -0.42 0.85 16 12 C -0.14 -2.30 6.71 -24.46 -0.16 -2.47 16 13 C 0.10 1.53 5.95 -2.41 -0.01 1.51 16 14 N -0.59 -10.23 3.33 -171.33 -0.57 -10.80 16 15 C 0.57 10.05 7.84 -12.13 -0.10 9.96 16 16 O -0.54 -10.94 16.61 5.36 0.09 -10.85 16 17 C 0.13 1.87 6.73 -82.95 -0.56 1.31 16 18 C -0.12 -1.47 9.54 -39.44 -0.38 -1.85 16 19 C -0.06 -0.59 9.88 -39.26 -0.39 -0.98 16 20 C -0.09 -0.89 5.75 -106.71 -0.61 -1.51 16 21 C -0.10 -0.72 9.77 -39.52 -0.39 -1.11 16 22 C -0.11 -0.70 9.96 -39.89 -0.40 -1.09 16 23 C -0.11 -0.72 9.94 -39.94 -0.40 -1.12 16 24 C -0.08 -0.75 9.99 -39.41 -0.39 -1.15 16 25 C 0.12 1.37 6.61 -84.85 -0.56 0.81 16 26 N -0.44 -5.82 6.51 -7.54 -0.05 -5.87 16 27 C 0.08 1.59 6.62 -3.07 -0.02 1.57 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 29 H 0.39 10.16 7.71 -40.82 -0.31 9.84 16 30 H 0.07 1.26 8.00 -51.93 -0.42 0.84 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.10 1.38 5.86 -51.93 -0.30 1.08 16 34 H 0.15 1.69 7.60 -52.49 -0.40 1.29 16 35 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 37 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 38 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 39 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 40 H 0.08 1.69 8.03 -51.93 -0.42 1.27 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 346.06 15.07 5.22 5.22 Total: -1.00 -33.04 346.06 -9.93 -42.97 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.20 Total: 7.34 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -4.85 Total: -0.26 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -0.16 Total: -61.77 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.04 -9.93 -42.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970551326.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.413 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.99 seconds