Wall clock time and date at job start Fri Apr 10 2020 22:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00175 * 2 1 4 4 H 1.48496 * 109.47469 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47037 * 300.00511 * 3 2 1 6 6 H 1.48504 * 109.46746 * 60.00220 * 3 2 1 7 7 C 1.38813 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99794 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00323 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00136 * 180.02562 * 9 7 2 11 11 H 1.09008 * 110.77876 * 323.21272 * 10 9 7 12 12 C 1.55158 * 110.72016 * 199.98117 * 10 9 7 13 13 C 1.55129 * 101.48606 * 205.96738 * 12 10 9 14 14 N 1.47427 * 104.71872 * 37.29347 * 13 12 10 15 15 C 1.34782 * 125.64746 * 155.82429 * 14 13 12 16 16 O 1.21502 * 120.00172 * 179.68789 * 15 14 13 17 17 C 1.48273 * 119.99653 * 359.68276 * 15 14 13 18 18 C 1.40286 * 119.23890 * 180.02562 * 17 15 14 19 19 C 1.36502 * 119.81630 * 180.25438 * 18 17 15 20 20 C 1.40760 * 118.24152 * 359.51179 * 19 18 17 21 21 C 1.40418 * 121.27690 * 180.21957 * 20 19 18 22 22 C 1.36132 * 119.65096 * 180.24866 * 21 20 19 23 23 C 1.39434 * 120.91550 * 359.97438 * 22 21 20 24 24 C 1.35997 * 121.08153 * 359.97438 * 23 22 21 25 25 C 1.40822 * 119.73757 * 0.02562 * 24 23 22 26 26 N 1.31880 * 119.24173 * 359.97438 * 17 15 14 27 27 C 1.47021 * 108.70473 * 335.54902 * 14 13 12 28 28 H 0.96996 * 119.99713 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99367 * 0.02562 * 9 7 2 30 30 H 1.09002 * 111.00059 * 324.20724 * 12 10 9 31 31 H 1.09002 * 111.00580 * 88.05606 * 12 10 9 32 32 H 1.08998 * 110.49775 * 278.45598 * 13 12 10 33 33 H 1.08999 * 110.34118 * 156.05234 * 13 12 10 34 34 H 1.08002 * 120.08768 * 359.96914 * 18 17 15 35 35 H 1.08001 * 120.87563 * 179.74538 * 19 18 17 36 36 H 1.08004 * 120.17679 * 0.26697 * 21 20 19 37 37 H 1.07996 * 119.54262 * 179.97438 * 22 21 20 38 38 H 1.07997 * 119.45797 * 180.02562 * 23 22 21 39 39 H 1.07999 * 120.12952 * 180.02562 * 24 23 22 40 40 H 1.09004 * 109.87981 * 120.71066 * 27 14 13 41 41 H 1.09000 * 109.88266 * 241.71547 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9583 -3.5836 -0.6109 12 6 1.1514 -4.8142 -0.4964 13 6 1.8067 -6.0382 0.1956 14 7 2.2230 -5.5413 1.5198 15 6 2.4087 -6.2977 2.6198 16 8 2.7595 -5.7796 3.6613 17 6 2.1846 -7.7622 2.5589 18 6 2.3821 -8.5342 3.7135 19 6 2.1843 -9.8841 3.6694 20 6 1.7735 -10.4576 2.4513 21 6 1.5471 -11.8386 2.3355 22 6 1.1553 -12.3588 1.1400 23 6 0.9747 -11.5391 0.0267 24 6 1.1835 -10.1973 0.1014 25 6 1.5895 -9.6204 1.3202 26 7 1.8034 -8.3088 1.4209 27 6 2.4085 -4.0851 1.4400 28 1 -0.4849 0.8400 0.0004 29 1 0.3556 -2.3880 -0.0005 30 1 0.1233 -4.6759 -0.1617 31 1 1.1980 -4.9096 -1.5813 32 1 2.6731 -6.3786 -0.3713 33 1 1.0820 -6.8451 0.3039 34 1 2.6942 -8.0623 4.6335 35 1 2.3352 -10.4953 4.5469 36 1 1.6827 -12.4846 3.1903 37 1 0.9821 -13.4212 1.0528 38 1 0.6630 -11.9767 -0.9102 39 1 1.0386 -9.5767 -0.7705 40 1 1.7441 -3.5875 2.1466 41 1 3.4445 -3.8305 1.6634 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970551326.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:45 Heat of formation + Delta-G solvation = 29.754027 kcal Electronic energy + Delta-G solvation = -24562.098646 eV Core-core repulsion = 21020.696344 eV Total energy + Delta-G solvation = -3541.402302 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.12199 -40.80801 -38.85448 -37.81015 -35.99754 -34.63423 -33.36660 -31.81054 -31.16761 -30.89598 -29.14388 -26.68849 -25.54548 -24.61659 -23.84097 -23.03303 -21.83809 -20.99135 -19.38254 -18.99343 -18.69786 -18.03864 -17.49991 -16.91263 -16.52913 -16.21016 -15.76679 -15.53386 -15.33444 -15.21074 -15.07165 -14.90337 -14.40620 -14.17074 -14.07930 -13.82414 -13.45600 -13.22471 -12.92223 -12.69290 -12.68156 -12.48565 -12.45867 -12.36845 -12.09107 -11.77497 -11.70031 -11.59885 -11.41217 -11.04179 -10.41326 -9.92101 -9.64303 -9.25298 -9.11747 -7.98200 -5.28747 -0.85272 -0.33997 0.93763 1.35675 1.46637 1.47935 1.57720 1.79659 2.18881 2.53966 2.86553 3.08687 3.33142 3.52204 3.61847 3.67967 3.82311 3.84139 3.91654 4.01131 4.14079 4.27241 4.33603 4.37840 4.40350 4.51914 4.53353 4.74962 4.79312 4.90724 4.95896 5.01409 5.03703 5.11638 5.15338 5.26520 5.36467 5.40589 5.47618 5.51033 5.52670 5.88939 6.23321 6.38196 6.56668 6.95495 7.30169 8.01134 8.25567 9.25039 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.028746 B = 0.002774 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.802798 B =10089.701785 C =10816.227663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.290 1.290 6 H -0.296 1.296 7 C -0.246 4.246 8 H 0.078 0.922 9 N -0.725 5.725 10 C 0.167 3.833 11 H 0.073 0.927 12 C -0.131 4.131 13 C 0.116 3.884 14 N -0.592 5.592 15 C 0.565 3.435 16 O -0.578 6.578 17 C 0.101 3.899 18 C -0.144 4.144 19 C -0.045 4.045 20 C -0.101 4.101 21 C -0.102 4.102 22 C -0.103 4.103 23 C -0.093 4.093 24 C -0.106 4.106 25 C 0.096 3.904 26 N -0.447 5.447 27 C 0.092 3.908 28 H 0.252 0.748 29 H 0.376 0.624 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.147 0.853 35 H 0.184 0.816 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.144 0.856 40 H 0.040 0.960 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.658 -31.928 0.893 32.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.217 1.217 6 H -0.223 1.223 7 C -0.377 4.377 8 H 0.096 0.904 9 N -0.364 5.364 10 C 0.057 3.943 11 H 0.091 0.909 12 C -0.170 4.170 13 C -0.006 4.006 14 N -0.323 5.323 15 C 0.353 3.647 16 O -0.458 6.458 17 C -0.051 4.051 18 C -0.165 4.165 19 C -0.071 4.071 20 C -0.103 4.103 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.113 4.113 24 C -0.124 4.124 25 C -0.028 4.028 26 N -0.159 5.159 27 C -0.034 4.034 28 H 0.061 0.939 29 H 0.209 0.791 30 H 0.083 0.917 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.129 0.871 34 H 0.164 0.836 35 H 0.201 0.799 36 H 0.180 0.820 37 H 0.180 0.820 38 H 0.178 0.822 39 H 0.161 0.839 40 H 0.058 0.942 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.859 -31.055 0.667 31.194 hybrid contribution 0.111 1.338 1.051 1.705 sum 2.970 -29.717 1.718 29.914 Atomic orbital electron populations 1.69820 1.06614 1.26135 1.59174 1.25580 0.96389 1.01155 1.03360 0.85085 0.78302 0.79789 0.76647 1.19008 1.21664 1.22335 1.19684 0.91565 0.85052 1.41429 0.90390 1.42534 1.05494 1.00564 1.87776 1.21396 0.95729 0.85774 0.91414 0.90866 1.23118 0.98758 0.93211 1.01924 1.22781 1.00521 0.96725 0.80600 1.48485 1.64420 1.08199 1.11204 1.18196 0.77908 0.86172 0.82409 1.90734 1.50099 1.74113 1.30845 1.20994 0.99717 0.92779 0.91573 1.21772 1.00716 0.95194 0.98807 1.21857 0.93304 0.93737 0.98181 1.19318 1.00454 0.96420 0.94103 1.21377 0.98525 0.92050 1.00133 1.21483 0.96526 1.02034 0.92005 1.21372 0.96816 0.92467 1.00608 1.21100 0.99332 0.96379 0.95620 1.19407 0.99643 0.88264 0.95491 1.68001 1.10200 1.12809 1.24933 1.22923 0.99859 0.79107 1.01523 0.93910 0.79110 0.91655 0.87612 0.89938 0.87060 0.83566 0.79867 0.82015 0.81961 0.82183 0.83863 0.94169 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.68 13.06 21.65 0.28 -59.40 16 2 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 3 Si 0.97 46.77 29.55 68.60 2.03 48.80 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 7 C -0.25 -13.74 9.98 84.03 0.84 -12.90 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 9 N -0.72 -36.89 5.18 -317.33 -1.64 -38.53 16 10 C 0.17 6.72 3.59 46.18 0.17 6.89 16 11 H 0.07 2.85 8.13 -2.38 -0.02 2.83 16 12 C -0.13 -4.16 6.71 32.06 0.22 -3.95 16 13 C 0.12 3.35 5.95 86.93 0.52 3.86 16 14 N -0.59 -21.48 3.33 -814.27 -2.71 -24.18 16 15 C 0.56 21.04 7.84 86.91 0.68 21.72 16 16 O -0.58 -25.14 16.61 -3.72 -0.06 -25.20 16 17 C 0.10 3.02 6.73 42.31 0.28 3.30 16 18 C -0.14 -3.44 9.54 22.36 0.21 -3.23 16 19 C -0.05 -0.74 9.88 22.48 0.22 -0.52 16 20 C -0.10 -1.72 5.75 -21.22 -0.12 -1.84 16 21 C -0.10 -1.00 9.77 22.31 0.22 -0.79 16 22 C -0.10 -0.77 9.96 22.07 0.22 -0.55 16 23 C -0.09 -0.88 9.94 22.04 0.22 -0.66 16 24 C -0.11 -1.66 9.99 22.38 0.22 -1.43 16 25 C 0.10 2.04 6.61 40.47 0.27 2.30 16 26 N -0.45 -11.85 6.51 -177.76 -1.16 -13.01 16 27 C 0.09 3.82 6.62 86.73 0.57 4.39 16 28 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.38 20.51 7.71 -92.71 -0.72 19.80 16 30 H 0.06 2.21 8.00 -2.39 -0.02 2.19 16 31 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.11 3.04 5.86 -2.39 -0.01 3.03 16 34 H 0.15 3.47 7.60 -2.91 -0.02 3.45 16 35 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 36 H 0.16 0.56 8.06 -2.91 -0.02 0.54 16 37 H 0.16 0.14 8.06 -2.91 -0.02 0.12 16 38 H 0.16 0.58 8.06 -2.91 -0.02 0.55 16 39 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 40 H 0.04 1.93 8.03 -2.38 -0.02 1.91 16 41 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -75.63 346.06 2.29 -73.34 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.34 Total: 25.29 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 5.20 Total: 12.89 kcal Atomic # 7 Polarization: -129.89 SS G_CDS: -5.22 Total: -135.12 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.06 Total: -25.20 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -75.63 2.29 -73.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970551326.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.091 kcal (2) G-P(sol) polarization free energy of solvation -75.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds