Wall clock time and date at job start Fri Apr 10 2020 22:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 120.00064 * 2 1 4 4 H 1.48503 * 109.47006 * 269.99652 * 3 2 1 5 5 H 1.48498 * 109.47059 * 29.99662 * 3 2 1 6 6 H 1.48494 * 109.47249 * 149.99779 * 3 2 1 7 7 C 1.38812 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00077 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00244 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00441 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.77498 * 323.21445 * 10 9 7 12 12 C 1.55152 * 110.72290 * 199.97743 * 10 9 7 13 13 C 1.55127 * 101.48595 * 205.96741 * 12 10 9 14 14 N 1.47420 * 104.72151 * 37.29779 * 13 12 10 15 15 C 1.34783 * 125.64730 * 155.81851 * 14 13 12 16 16 O 1.21605 * 119.99613 * 184.93351 * 15 14 13 17 17 C 1.47442 * 119.99871 * 4.93557 * 15 14 13 18 18 C 1.38866 * 120.46372 * 39.43351 * 17 15 14 19 19 C 1.38902 * 120.67458 * 179.97438 * 18 17 15 20 20 C 1.36370 * 121.27509 * 359.97438 * 19 18 17 21 21 C 1.40398 * 119.98431 * 359.97438 * 20 19 18 22 22 C 1.40470 * 121.95552 * 179.97438 * 21 20 19 23 23 N 1.31271 * 119.88342 * 180.02562 * 22 21 20 24 24 C 1.32560 * 122.73597 * 359.97438 * 23 22 21 25 25 C 1.36326 * 121.81743 * 359.97438 * 24 23 22 26 26 C 1.40298 * 118.70009 * 0.02562 * 25 24 23 27 27 C 1.47019 * 108.70351 * 335.54941 * 14 13 12 28 28 H 0.97009 * 119.99842 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00012 * 359.97438 * 9 7 2 30 30 H 1.08998 * 111.00694 * 324.20880 * 12 10 9 31 31 H 1.09003 * 111.00597 * 88.05570 * 12 10 9 32 32 H 1.08996 * 110.49605 * 278.44739 * 13 12 10 33 33 H 1.09007 * 110.34027 * 156.05863 * 13 12 10 34 34 H 1.07999 * 119.66035 * 359.96865 * 18 17 15 35 35 H 1.07992 * 119.36025 * 179.97438 * 19 18 17 36 36 H 1.07997 * 120.00917 * 180.02562 * 20 19 18 37 37 H 1.08004 * 120.05600 * 0.02562 * 22 21 20 38 38 H 1.07997 * 119.08902 * 179.71931 * 24 23 22 39 39 H 1.07996 * 120.65008 * 180.02562 * 25 24 23 40 40 H 1.08996 * 109.88173 * 120.70829 * 27 14 13 41 41 H 1.09000 * 109.88507 * 241.71667 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9582 -3.5835 -0.6097 12 6 1.1514 -4.8141 -0.4952 13 6 1.8067 -6.0380 0.1969 14 7 2.2229 -5.5413 1.5209 15 6 2.4085 -6.2977 2.6210 16 8 2.6664 -5.7695 3.6855 17 6 2.2989 -7.7654 2.5334 18 6 2.8024 -8.4446 1.4318 19 6 2.7020 -9.8272 1.3450 20 6 2.1100 -10.5574 2.3329 21 6 1.5880 -9.9124 3.4655 22 6 0.9694 -10.6235 4.5070 23 7 0.4949 -9.9788 5.5474 24 6 0.5709 -8.6611 5.6700 25 6 1.1531 -7.8827 4.7142 26 6 1.6834 -8.5017 3.5722 27 6 2.4084 -4.0850 1.4412 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 0.1233 -4.6759 -0.1606 31 1 1.1979 -4.9096 -1.5801 32 1 2.6730 -6.3786 -0.3702 33 1 1.0819 -6.8451 0.3051 34 1 3.2768 -7.8920 0.6343 35 1 3.1005 -10.3337 0.4785 36 1 2.0434 -11.6317 2.2446 37 1 0.8844 -11.6988 4.4520 38 1 0.1566 -8.1908 6.5495 39 1 1.2051 -6.8106 4.8336 40 1 1.7441 -3.5875 2.1477 41 1 3.4444 -3.8304 1.6645 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970714014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:52 Heat of formation + Delta-G solvation = 43.248944 kcal Electronic energy + Delta-G solvation = -24766.854938 eV Core-core repulsion = 21226.037820 eV Total energy + Delta-G solvation = -3540.817118 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -41.25081 -39.66102 -37.54392 -37.20678 -34.22918 -33.14450 -31.88984 -31.25217 -30.06720 -29.62981 -27.55339 -25.09655 -24.22368 -23.73287 -23.16924 -22.32191 -20.26546 -19.48016 -18.39638 -17.61973 -17.14871 -16.83439 -16.49477 -16.22611 -15.26992 -15.06739 -14.72226 -14.53314 -14.35488 -13.90392 -13.66395 -13.51055 -13.32525 -13.09257 -12.81672 -12.62238 -12.34683 -12.28928 -11.93722 -11.71009 -11.52015 -11.20033 -10.86990 -10.79699 -10.47254 -10.36367 -10.09812 -9.94272 -9.79903 -9.59278 -9.37148 -9.04506 -8.48381 -8.28385 -7.13344 -5.87339 -3.18588 -0.06667 0.62401 1.48644 2.53989 2.92644 3.13557 3.38841 3.44805 3.46221 3.85662 4.17576 4.24528 4.40302 4.45302 4.51130 4.59061 4.68469 4.79350 4.85919 5.06039 5.15875 5.17709 5.34962 5.40315 5.47383 5.59268 5.61378 5.66029 5.69787 5.72774 5.85472 5.95554 6.03152 6.10902 6.22691 6.28732 6.35551 6.42882 6.49732 6.60887 6.81691 7.61216 7.63408 7.75292 8.19652 8.30031 9.42033 9.94686 10.29301 11.34587 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.024426 B = 0.002952 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.037968 B = 9481.225317 C =10081.240678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.250 4.250 8 H 0.073 0.927 9 N -0.712 5.712 10 C 0.172 3.828 11 H 0.067 0.933 12 C -0.140 4.140 13 C 0.099 3.901 14 N -0.604 5.604 15 C 0.567 3.433 16 O -0.535 6.535 17 C -0.113 4.113 18 C -0.064 4.064 19 C -0.126 4.126 20 C -0.068 4.068 21 C -0.118 4.118 22 C 0.141 3.859 23 N -0.487 5.487 24 C 0.075 3.925 25 C -0.142 4.142 26 C 0.009 3.991 27 C 0.082 3.918 28 H 0.257 0.743 29 H 0.387 0.613 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.164 0.836 38 H 0.156 0.844 39 H 0.153 0.847 40 H 0.075 0.925 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.333 -23.888 1.423 24.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.381 4.381 8 H 0.091 0.909 9 N -0.352 5.352 10 C 0.060 3.940 11 H 0.084 0.916 12 C -0.179 4.179 13 C -0.025 4.025 14 N -0.337 5.337 15 C 0.355 3.645 16 O -0.413 6.413 17 C -0.116 4.116 18 C -0.084 4.084 19 C -0.144 4.144 20 C -0.088 4.088 21 C -0.120 4.120 22 C -0.031 4.031 23 N -0.194 5.194 24 C -0.068 4.068 25 C -0.162 4.162 26 C 0.003 3.997 27 C -0.043 4.043 28 H 0.067 0.933 29 H 0.222 0.778 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.181 0.819 38 H 0.173 0.827 39 H 0.171 0.829 40 H 0.094 0.906 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.148 -23.753 2.801 24.124 hybrid contribution 0.615 1.448 -0.666 1.708 sum 3.763 -22.305 2.135 22.721 Atomic orbital electron populations 1.69660 1.05192 1.25984 1.56815 1.24779 0.95530 0.97892 1.02252 0.86170 0.78766 0.83565 0.77559 1.21569 1.21668 1.20591 1.19247 0.91121 0.83900 1.43848 0.90911 1.42369 1.05827 0.99402 1.87636 1.21207 0.94865 0.86414 0.91503 0.91559 1.23113 1.00342 0.94070 1.00399 1.22517 0.98676 0.97850 0.83417 1.48505 1.66041 1.09617 1.09503 1.17733 0.77902 0.85640 0.83210 1.90781 1.49093 1.73904 1.27532 1.19928 1.02698 0.93434 0.95505 1.21636 0.95943 0.94762 0.96043 1.20851 1.00266 0.93576 0.99698 1.21135 0.95302 1.00230 0.92126 1.18989 1.02254 0.93178 0.97547 1.23189 0.92091 0.99932 0.87913 1.67416 1.17090 1.10755 1.24185 1.22278 0.96736 0.88874 0.98897 1.22302 0.97327 1.03053 0.93487 1.17896 0.95645 0.92233 0.93898 1.23329 1.01393 0.77149 1.02463 0.93298 0.77822 0.90377 0.89833 0.91265 0.90901 0.84530 0.84808 0.84547 0.81873 0.82720 0.82926 0.90639 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.34 13.06 55.49 0.72 -26.61 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.25 -6.68 9.98 -15.06 -0.15 -6.83 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.71 -16.91 5.18 -51.65 -0.27 -17.18 16 10 C 0.17 3.15 3.59 -66.10 -0.24 2.92 16 11 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 12 C -0.14 -1.99 6.71 -24.47 -0.16 -2.15 16 13 C 0.10 1.17 5.28 -2.41 -0.01 1.16 16 14 N -0.60 -9.35 3.32 -171.65 -0.57 -9.92 16 15 C 0.57 9.24 7.13 -12.51 -0.09 9.15 16 16 O -0.53 -10.54 15.13 5.27 0.08 -10.46 16 17 C -0.11 -1.48 5.36 -104.70 -0.56 -2.04 16 18 C -0.06 -0.62 8.22 -39.10 -0.32 -0.94 16 19 C -0.13 -0.93 9.92 -40.01 -0.40 -1.33 16 20 C -0.07 -0.51 9.79 -39.44 -0.39 -0.90 16 21 C -0.12 -1.23 5.74 -106.88 -0.61 -1.84 16 22 C 0.14 1.37 11.05 -16.95 -0.19 1.19 16 23 N -0.49 -5.85 10.30 -13.11 -0.14 -5.98 16 24 C 0.07 0.91 11.07 -17.93 -0.20 0.72 16 25 C -0.14 -1.95 9.21 -39.50 -0.36 -2.32 16 26 C 0.01 0.12 5.76 -106.55 -0.61 -0.49 16 27 C 0.08 1.50 6.62 -3.07 -0.02 1.48 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.39 9.81 7.71 -40.82 -0.31 9.49 16 30 H 0.08 1.19 8.00 -51.93 -0.42 0.77 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.07 0.66 7.02 -51.93 -0.36 0.29 16 33 H 0.07 0.77 7.35 -51.92 -0.38 0.39 16 34 H 0.14 1.13 6.04 -52.49 -0.32 0.81 16 35 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 37 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 38 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 39 H 0.15 2.32 6.02 -52.49 -0.32 2.01 16 40 H 0.08 1.62 8.03 -51.93 -0.42 1.20 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 341.74 15.07 5.15 5.15 Total: -1.00 -33.09 341.74 -9.49 -42.57 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.03 Total: 8.08 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -4.41 Total: -2.55 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -0.25 Total: -59.70 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.08 Total: -10.46 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.09 -9.49 -42.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970714014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.823 kcal (2) G-P(sol) polarization free energy of solvation -33.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds