Wall clock time and date at job start Fri Apr 10 2020 22:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 120.00064 * 2 1 4 4 H 1.48503 * 109.47006 * 269.99652 * 3 2 1 5 5 H 1.48498 * 109.47059 * 29.99662 * 3 2 1 6 6 H 1.48494 * 109.47249 * 149.99779 * 3 2 1 7 7 C 1.38812 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00077 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00244 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00441 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.77498 * 323.21445 * 10 9 7 12 12 C 1.55152 * 110.72290 * 199.97743 * 10 9 7 13 13 C 1.55127 * 101.48595 * 205.96741 * 12 10 9 14 14 N 1.47420 * 104.72151 * 37.29779 * 13 12 10 15 15 C 1.34783 * 125.64730 * 155.81851 * 14 13 12 16 16 O 1.21605 * 119.99613 * 184.93351 * 15 14 13 17 17 C 1.47442 * 119.99871 * 4.93557 * 15 14 13 18 18 C 1.38866 * 120.46372 * 39.43351 * 17 15 14 19 19 C 1.38902 * 120.67458 * 179.97438 * 18 17 15 20 20 C 1.36370 * 121.27509 * 359.97438 * 19 18 17 21 21 C 1.40398 * 119.98431 * 359.97438 * 20 19 18 22 22 C 1.40470 * 121.95552 * 179.97438 * 21 20 19 23 23 N 1.31271 * 119.88342 * 180.02562 * 22 21 20 24 24 C 1.32560 * 122.73597 * 359.97438 * 23 22 21 25 25 C 1.36326 * 121.81743 * 359.97438 * 24 23 22 26 26 C 1.40298 * 118.70009 * 0.02562 * 25 24 23 27 27 C 1.47019 * 108.70351 * 335.54941 * 14 13 12 28 28 H 0.97009 * 119.99842 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00012 * 359.97438 * 9 7 2 30 30 H 1.08998 * 111.00694 * 324.20880 * 12 10 9 31 31 H 1.09003 * 111.00597 * 88.05570 * 12 10 9 32 32 H 1.08996 * 110.49605 * 278.44739 * 13 12 10 33 33 H 1.09007 * 110.34027 * 156.05863 * 13 12 10 34 34 H 1.07999 * 119.66035 * 359.96865 * 18 17 15 35 35 H 1.07992 * 119.36025 * 179.97438 * 19 18 17 36 36 H 1.07997 * 120.00917 * 180.02562 * 20 19 18 37 37 H 1.08004 * 120.05600 * 0.02562 * 22 21 20 38 38 H 1.07997 * 119.08902 * 179.71931 * 24 23 22 39 39 H 1.07996 * 120.65008 * 180.02562 * 25 24 23 40 40 H 1.08996 * 109.88173 * 120.70829 * 27 14 13 41 41 H 1.09000 * 109.88507 * 241.71667 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9582 -3.5835 -0.6097 12 6 1.1514 -4.8141 -0.4952 13 6 1.8067 -6.0380 0.1969 14 7 2.2229 -5.5413 1.5209 15 6 2.4085 -6.2977 2.6210 16 8 2.6664 -5.7695 3.6855 17 6 2.2989 -7.7654 2.5334 18 6 2.8024 -8.4446 1.4318 19 6 2.7020 -9.8272 1.3450 20 6 2.1100 -10.5574 2.3329 21 6 1.5880 -9.9124 3.4655 22 6 0.9694 -10.6235 4.5070 23 7 0.4949 -9.9788 5.5474 24 6 0.5709 -8.6611 5.6700 25 6 1.1531 -7.8827 4.7142 26 6 1.6834 -8.5017 3.5722 27 6 2.4084 -4.0850 1.4412 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 0.1233 -4.6759 -0.1606 31 1 1.1979 -4.9096 -1.5801 32 1 2.6730 -6.3786 -0.3702 33 1 1.0819 -6.8451 0.3051 34 1 3.2768 -7.8920 0.6343 35 1 3.1005 -10.3337 0.4785 36 1 2.0434 -11.6317 2.2446 37 1 0.8844 -11.6988 4.4520 38 1 0.1566 -8.1908 6.5495 39 1 1.2051 -6.8106 4.8336 40 1 1.7441 -3.5875 2.1477 41 1 3.4444 -3.8304 1.6645 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970714014.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:51 Heat of formation + Delta-G solvation = 20.965514 kcal Electronic energy + Delta-G solvation = -24767.821220 eV Core-core repulsion = 21226.037820 eV Total energy + Delta-G solvation = -3541.783400 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.13727 -40.81904 -38.78009 -38.13978 -35.98835 -34.02985 -33.42861 -32.22957 -31.27667 -30.76858 -29.02669 -26.35880 -25.45590 -24.52736 -24.52620 -23.37633 -21.67660 -20.64187 -19.34640 -19.16687 -18.38513 -17.71606 -17.63557 -17.37844 -16.62140 -16.29592 -15.91774 -15.55984 -15.35736 -15.20440 -15.08197 -14.72837 -14.57934 -14.32167 -13.93148 -13.61490 -13.48946 -13.35288 -13.06017 -12.90473 -12.87573 -12.61241 -12.44261 -12.41535 -12.12618 -11.78133 -11.63999 -11.29334 -11.09277 -10.98662 -10.52317 -10.13493 -9.76797 -9.12903 -9.12336 -7.99565 -5.29922 -0.84605 -0.15417 0.60765 1.45833 1.47604 1.55639 1.58758 1.83777 2.11558 2.53205 3.03668 3.26223 3.35706 3.45907 3.60148 3.64767 3.75946 3.82387 3.88715 3.90246 4.03074 4.17431 4.29904 4.31312 4.36568 4.49310 4.54174 4.62509 4.73638 4.75597 4.84400 4.88982 4.96099 5.07771 5.14915 5.18430 5.28851 5.34474 5.35940 5.49707 5.60490 5.78733 6.22018 6.42447 6.92013 6.97049 7.28957 8.00924 8.23620 9.23391 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.024426 B = 0.002952 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.037968 B = 9481.225317 C =10081.240678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.971 3.029 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.272 1.272 7 C -0.247 4.247 8 H 0.079 0.921 9 N -0.726 5.726 10 C 0.167 3.833 11 H 0.079 0.921 12 C -0.130 4.130 13 C 0.103 3.897 14 N -0.605 5.605 15 C 0.562 3.438 16 O -0.587 6.587 17 C -0.154 4.154 18 C -0.041 4.041 19 C -0.125 4.125 20 C -0.042 4.042 21 C -0.133 4.133 22 C 0.157 3.843 23 N -0.513 5.513 24 C 0.075 3.925 25 C -0.180 4.180 26 C -0.008 4.008 27 C 0.093 3.907 28 H 0.252 0.748 29 H 0.376 0.624 30 H 0.062 0.938 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.155 0.845 35 H 0.179 0.821 36 H 0.185 0.815 37 H 0.210 0.790 38 H 0.163 0.837 39 H 0.120 0.880 40 H 0.031 0.969 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.755 -28.367 -1.071 28.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.800 3.200 4 H -0.208 1.208 5 H -0.225 1.225 6 H -0.197 1.197 7 C -0.378 4.378 8 H 0.097 0.903 9 N -0.365 5.365 10 C 0.057 3.943 11 H 0.096 0.904 12 C -0.169 4.169 13 C -0.018 4.018 14 N -0.337 5.337 15 C 0.353 3.647 16 O -0.469 6.469 17 C -0.157 4.157 18 C -0.061 4.061 19 C -0.142 4.142 20 C -0.062 4.062 21 C -0.135 4.135 22 C -0.015 4.015 23 N -0.222 5.222 24 C -0.067 4.067 25 C -0.200 4.200 26 C -0.014 4.014 27 C -0.033 4.033 28 H 0.061 0.939 29 H 0.208 0.792 30 H 0.080 0.920 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.113 0.887 34 H 0.172 0.828 35 H 0.196 0.804 36 H 0.202 0.798 37 H 0.227 0.773 38 H 0.180 0.820 39 H 0.138 0.862 40 H 0.049 0.951 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.602 -28.283 0.281 28.656 hybrid contribution 0.219 2.633 0.097 2.644 sum 4.821 -25.650 0.378 26.102 Atomic orbital electron populations 1.69810 1.06625 1.26189 1.59101 1.25567 0.96346 1.01158 1.03360 0.85175 0.77632 0.79539 0.77625 1.20820 1.22513 1.19683 1.19642 0.91575 0.85089 1.41534 0.90316 1.42542 1.05498 1.00693 1.87756 1.21438 0.95889 0.85715 0.91304 0.90353 1.23064 0.98629 0.92954 1.02217 1.22780 1.00578 0.97099 0.81328 1.48531 1.66006 1.08095 1.11083 1.18415 0.76592 0.87376 0.82335 1.90740 1.51355 1.75277 1.29506 1.19653 1.07004 0.91011 0.98016 1.21984 0.93351 0.96251 0.94511 1.21336 0.99580 0.92242 1.01073 1.21717 0.92049 1.02512 0.89906 1.19302 1.03123 0.91791 0.99261 1.24003 0.89292 1.01753 0.86434 1.67508 1.18841 1.10112 1.25706 1.22388 0.96100 0.89439 0.98731 1.22111 1.00498 1.01747 0.95624 1.18128 0.95817 0.93989 0.93465 1.22869 0.99528 0.79443 1.01450 0.93939 0.79205 0.91971 0.86993 0.87295 0.88707 0.82765 0.80367 0.79757 0.77343 0.82014 0.86215 0.95077 0.93258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.87 13.06 21.65 0.28 -58.59 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 3 Si 0.97 46.01 29.55 68.60 2.03 48.04 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.25 -13.43 9.98 84.03 0.84 -12.59 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.73 -35.51 5.18 -317.34 -1.64 -37.15 16 10 C 0.17 6.13 3.59 46.18 0.17 6.29 16 11 H 0.08 2.72 8.12 -2.39 -0.02 2.70 16 12 C -0.13 -3.49 6.71 32.06 0.21 -3.28 16 13 C 0.10 2.19 5.28 86.93 0.46 2.65 16 14 N -0.61 -19.00 3.32 -815.22 -2.71 -21.71 16 15 C 0.56 19.23 7.13 86.67 0.62 19.84 16 16 O -0.59 -25.47 15.13 -4.05 -0.06 -25.53 16 17 C -0.15 -3.95 5.36 -19.92 -0.11 -4.06 16 18 C -0.04 -0.64 8.22 22.58 0.19 -0.46 16 19 C -0.12 -1.07 9.92 21.99 0.22 -0.85 16 20 C -0.04 -0.38 9.79 22.36 0.22 -0.16 16 21 C -0.13 -2.36 5.74 -21.33 -0.12 -2.48 16 22 C 0.16 2.57 11.05 85.32 0.94 3.51 16 23 N -0.51 -11.90 10.30 -195.40 -2.01 -13.91 16 24 C 0.08 1.95 11.07 84.14 0.93 2.89 16 25 C -0.18 -5.42 9.21 22.32 0.21 -5.21 16 26 C -0.01 -0.22 5.76 -21.11 -0.12 -0.34 16 27 C 0.09 3.62 6.62 86.73 0.57 4.19 16 28 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 29 H 0.38 19.85 7.71 -92.71 -0.72 19.13 16 30 H 0.06 1.88 8.00 -2.39 -0.02 1.86 16 31 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.11 1.52 7.02 -2.39 -0.02 1.50 16 33 H 0.09 1.67 7.35 -2.38 -0.02 1.65 16 34 H 0.15 1.77 6.04 -2.91 -0.02 1.75 16 35 H 0.18 0.08 8.06 -2.91 -0.02 0.05 16 36 H 0.19 -0.06 8.06 -2.91 -0.02 -0.09 16 37 H 0.21 1.32 8.06 -2.91 -0.02 1.29 16 38 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 39 H 0.12 4.28 6.02 -2.91 -0.02 4.27 16 40 H 0.03 1.46 8.03 -2.39 -0.02 1.44 16 41 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -80.23 341.74 1.93 -78.31 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.35 Total: 24.21 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 5.69 Total: 6.34 kcal Atomic # 7 Polarization: -125.28 SS G_CDS: -6.08 Total: -131.36 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.06 Total: -25.53 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -80.23 1.93 -78.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970714014.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.272 kcal (2) G-P(sol) polarization free energy of solvation -80.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds