Wall clock time and date at job start Fri Apr 10 2020 22:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99513 * 2 1 4 4 H 1.48493 * 109.47430 * 89.99787 * 3 2 1 5 5 H 1.48503 * 109.47108 * 209.99649 * 3 2 1 6 6 H 1.48500 * 109.47047 * 329.99417 * 3 2 1 7 7 C 1.38811 * 120.00498 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99718 * 0.02562 * 7 2 1 9 9 N 1.36932 * 119.99903 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99579 * 180.02562 * 9 7 2 11 11 H 1.08994 * 110.64651 * 328.13900 * 10 9 7 12 12 C 1.55158 * 110.71837 * 204.99618 * 10 9 7 13 13 C 1.54911 * 101.58293 * 206.13486 * 12 10 9 14 14 N 1.47425 * 104.83020 * 37.00989 * 13 12 10 15 15 C 1.34776 * 125.64606 * 155.83451 * 14 13 12 16 16 O 1.21599 * 120.00026 * 175.97634 * 15 14 13 17 17 C 1.47445 * 120.00136 * 355.98050 * 15 14 13 18 18 C 1.38958 * 121.17118 * 36.17392 * 17 15 14 19 19 N 1.32198 * 121.31413 * 179.74508 * 18 17 15 20 20 C 1.31199 * 123.69768 * 0.56621 * 19 18 17 21 21 C 1.40375 * 120.91551 * 359.71127 * 20 19 18 22 22 C 1.40397 * 122.14461 * 179.97438 * 21 20 19 23 23 C 1.36239 * 119.48521 * 180.02562 * 22 21 20 24 24 C 1.39293 * 121.10558 * 0.02562 * 23 22 21 25 25 C 1.36446 * 120.94785 * 359.97438 * 24 23 22 26 26 C 1.39691 * 119.43402 * 359.97438 * 25 24 23 27 27 C 1.47014 * 108.70213 * 335.87163 * 14 13 12 28 28 H 0.96997 * 120.00304 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00339 * 359.97438 * 9 7 2 30 30 H 1.09001 * 111.00773 * 324.21321 * 12 10 9 31 31 H 1.09002 * 111.00648 * 88.02577 * 12 10 9 32 32 H 1.09004 * 110.36331 * 155.85083 * 13 12 10 33 33 H 1.08998 * 110.36409 * 278.16900 * 13 12 10 34 34 H 1.07995 * 119.34246 * 0.02562 * 18 17 15 35 35 H 1.08003 * 119.53808 * 179.69757 * 20 19 18 36 36 H 1.07998 * 120.25640 * 0.05182 * 22 21 20 37 37 H 1.07999 * 119.44169 * 179.97438 * 23 22 21 38 38 H 1.08001 * 119.52433 * 179.97438 * 24 23 22 39 39 H 1.08002 * 120.27796 * 180.02562 * 25 24 23 40 40 H 1.09005 * 109.88136 * 241.63591 * 27 14 13 41 41 H 1.09002 * 109.87942 * 120.47572 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0466 1.4000 5 1 3.5477 1.4404 -0.7000 6 1 1.4475 2.6527 -0.7002 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2019 0.0011 10 6 4.1122 -2.4706 0.0011 11 1 3.5540 -3.2367 0.5391 12 6 5.5256 -2.2885 0.6149 13 6 6.3127 -3.4325 -0.0716 14 7 5.7751 -3.4903 -1.4432 15 6 6.4209 -3.9799 -2.5200 16 8 5.8520 -4.0448 -3.5927 17 6 7.8174 -4.4369 -2.3973 18 6 8.2672 -5.0745 -1.2475 19 7 9.5173 -5.4899 -1.1365 20 6 10.4228 -5.3315 -2.0725 21 6 10.1045 -4.6979 -3.2841 22 6 11.0530 -4.5143 -4.3028 23 6 10.6851 -3.8915 -5.4573 24 6 9.3832 -3.4330 -5.6442 25 6 8.4363 -3.5948 -4.6752 26 6 8.7795 -4.2302 -3.4794 27 6 4.4181 -2.9246 -1.4418 28 1 -0.4850 0.8400 -0.0004 29 1 3.8647 -0.3619 0.0007 30 1 5.9426 -1.3158 0.3538 31 1 5.5023 -2.4236 1.6962 32 1 7.3778 -3.2016 -0.0910 33 1 6.1376 -4.3764 0.4446 34 1 7.5806 -5.2380 -0.4301 35 1 11.4271 -5.6933 -1.9085 36 1 12.0663 -4.8644 -4.1724 37 1 11.4154 -3.7502 -6.2403 38 1 9.1194 -2.9423 -6.5695 39 1 7.4299 -3.2354 -4.8317 40 1 3.6998 -3.6836 -1.7518 41 1 4.3721 -2.0700 -2.1169 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970777091.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:58 Heat of formation + Delta-G solvation = 49.096480 kcal Electronic energy + Delta-G solvation = -24799.452626 eV Core-core repulsion = 21258.889076 eV Total energy + Delta-G solvation = -3540.563550 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.15300 -39.60797 -37.63105 -37.42108 -34.38283 -33.06425 -31.74226 -31.46305 -30.26191 -29.86288 -27.84962 -25.43901 -23.92702 -23.75389 -22.76018 -22.40685 -20.41022 -19.51930 -18.53427 -17.83267 -17.67776 -17.02567 -16.37712 -16.13738 -15.36904 -15.07362 -14.74666 -14.42142 -14.32933 -14.15718 -13.91728 -13.64554 -13.17040 -13.10985 -12.70939 -12.66679 -12.45246 -12.24380 -12.22139 -11.82568 -11.58227 -11.38066 -10.94755 -10.83253 -10.61252 -10.36683 -10.20000 -10.13616 -9.68166 -9.54593 -9.38851 -9.07132 -8.55318 -8.35660 -7.43912 -5.86232 -3.24742 -0.15373 0.59035 1.41731 2.60583 2.83360 3.03544 3.31774 3.34075 3.40338 3.77121 3.99405 4.20822 4.30512 4.40483 4.50563 4.55830 4.61628 4.73331 4.84031 4.94871 5.00868 5.09418 5.23018 5.30751 5.34174 5.44845 5.52980 5.57573 5.65608 5.75278 5.75803 5.80338 6.06047 6.11941 6.15456 6.16437 6.24303 6.34243 6.51412 6.52066 6.68365 7.54743 7.60084 7.87287 8.14467 8.32167 9.08206 9.80259 9.97676 11.31361 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.021663 B = 0.003155 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.230901 B = 8872.400810 C = 9422.362376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.277 1.277 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.093 0.907 9 N -0.736 5.736 10 C 0.177 3.823 11 H 0.080 0.920 12 C -0.145 4.145 13 C 0.094 3.906 14 N -0.605 5.605 15 C 0.574 3.426 16 O -0.534 6.534 17 C -0.159 4.159 18 C 0.109 3.891 19 N -0.493 5.493 20 C 0.167 3.833 21 C -0.119 4.119 22 C -0.089 4.089 23 C -0.119 4.119 24 C -0.096 4.096 25 C -0.102 4.102 26 C 0.010 3.990 27 C 0.083 3.917 28 H 0.261 0.739 29 H 0.364 0.636 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.165 0.835 35 H 0.166 0.834 36 H 0.135 0.865 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.147 0.853 40 H 0.067 0.933 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.336 -9.638 -5.362 27.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.186 4.186 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.203 1.203 6 H -0.216 1.216 7 C -0.384 4.384 8 H 0.111 0.889 9 N -0.377 5.377 10 C 0.066 3.934 11 H 0.098 0.902 12 C -0.184 4.184 13 C -0.030 4.030 14 N -0.338 5.338 15 C 0.362 3.638 16 O -0.412 6.412 17 C -0.164 4.164 18 C -0.034 4.034 19 N -0.201 5.201 20 C -0.004 4.004 21 C -0.121 4.121 22 C -0.109 4.109 23 C -0.137 4.137 24 C -0.115 4.115 25 C -0.120 4.120 26 C 0.004 3.996 27 C -0.042 4.042 28 H 0.071 0.929 29 H 0.198 0.802 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.182 0.818 35 H 0.183 0.817 36 H 0.153 0.847 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.165 0.835 40 H 0.085 0.915 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 24.821 -10.122 -5.140 27.294 hybrid contribution 0.275 1.638 -0.879 1.879 sum 25.096 -8.485 -6.019 27.166 Atomic orbital electron populations 1.69697 1.05139 1.26063 1.56585 1.24688 0.95233 0.97296 1.01423 0.86569 0.79246 0.84953 0.77847 1.20890 1.20326 1.21575 1.19087 0.80251 0.94954 1.44146 0.88895 1.42724 1.04219 1.01521 1.89221 1.21194 0.90661 0.90248 0.91333 0.90248 1.23149 0.96712 0.97912 1.00620 1.22586 0.98571 0.99552 0.82241 1.48476 1.17662 1.59845 1.07771 1.17494 0.84850 0.78143 0.83361 1.90778 1.67896 1.55742 1.26762 1.21948 0.94366 1.04299 0.95825 1.23062 0.92173 0.92807 0.95403 1.67144 1.02281 1.18778 1.31856 1.23264 0.98616 0.91231 0.87330 1.18976 0.93852 1.02136 0.97135 1.20967 0.98744 0.98430 0.92728 1.20982 0.96549 0.98337 0.97787 1.21137 0.92952 0.98179 0.99277 1.21308 1.01174 0.97499 0.92036 1.18868 0.91587 0.95622 0.93476 1.23238 0.80469 0.98392 1.02088 0.92856 0.80233 0.90711 0.89433 0.90704 0.90709 0.81802 0.81711 0.84681 0.85396 0.85243 0.83538 0.91471 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.57 13.97 55.49 0.78 -27.80 16 2 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 3 Si 0.88 21.52 27.74 -169.99 -4.71 16.81 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.28 -6.37 6.52 56.52 0.37 -6.01 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.25 -6.91 10.44 -15.06 -0.16 -7.06 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.74 -16.44 4.95 -51.66 -0.26 -16.69 16 10 C 0.18 3.13 3.61 -66.10 -0.24 2.90 16 11 H 0.08 1.40 8.09 -51.93 -0.42 0.98 16 12 C -0.14 -1.95 6.71 -24.58 -0.16 -2.11 16 13 C 0.09 1.10 5.15 -2.53 -0.01 1.09 16 14 N -0.60 -9.21 3.33 -171.78 -0.57 -9.79 16 15 C 0.57 9.28 7.33 -12.51 -0.09 9.19 16 16 O -0.53 -10.30 15.19 5.28 0.08 -10.22 16 17 C -0.16 -2.17 5.68 -102.66 -0.58 -2.76 16 18 C 0.11 1.28 9.12 -17.13 -0.16 1.13 16 19 N -0.49 -5.51 10.22 -12.58 -0.13 -5.64 16 20 C 0.17 1.53 11.00 -17.02 -0.19 1.34 16 21 C -0.12 -1.21 5.74 -106.89 -0.61 -1.82 16 22 C -0.09 -0.67 9.82 -39.49 -0.39 -1.06 16 23 C -0.12 -0.90 9.94 -39.91 -0.40 -1.30 16 24 C -0.10 -0.91 9.96 -39.84 -0.40 -1.31 16 25 C -0.10 -1.28 9.27 -39.69 -0.37 -1.65 16 26 C 0.01 0.13 5.90 -104.75 -0.62 -0.49 16 27 C 0.08 1.48 6.62 -3.07 -0.02 1.46 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.36 8.03 5.62 -40.82 -0.23 7.80 16 30 H 0.07 1.04 8.01 -51.93 -0.42 0.62 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.79 6.62 -51.93 -0.34 0.45 16 33 H 0.07 0.73 7.29 -51.93 -0.38 0.35 16 34 H 0.17 1.66 5.51 -52.49 -0.29 1.37 16 35 H 0.17 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 37 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 38 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.15 2.10 6.11 -52.49 -0.32 1.78 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.07 1.48 8.03 -51.93 -0.42 1.06 16 LS Contribution 338.09 15.07 5.09 5.09 Total: -1.00 -33.78 338.09 -9.15 -42.93 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -4.94 Total: 7.56 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -4.49 Total: -2.26 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -0.18 Total: -59.92 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.71 Total: 16.81 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.78 -9.15 -42.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970777091.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.026 kcal (2) G-P(sol) polarization free energy of solvation -33.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds