Wall clock time and date at job start Fri Apr 10 2020 22:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99513 * 2 1 4 4 H 1.48493 * 109.47430 * 89.99787 * 3 2 1 5 5 H 1.48503 * 109.47108 * 209.99649 * 3 2 1 6 6 H 1.48500 * 109.47047 * 329.99417 * 3 2 1 7 7 C 1.38811 * 120.00498 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99718 * 0.02562 * 7 2 1 9 9 N 1.36932 * 119.99903 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99579 * 180.02562 * 9 7 2 11 11 H 1.08994 * 110.64651 * 328.13900 * 10 9 7 12 12 C 1.55158 * 110.71837 * 204.99618 * 10 9 7 13 13 C 1.54911 * 101.58293 * 206.13486 * 12 10 9 14 14 N 1.47425 * 104.83020 * 37.00989 * 13 12 10 15 15 C 1.34776 * 125.64606 * 155.83451 * 14 13 12 16 16 O 1.21599 * 120.00026 * 175.97634 * 15 14 13 17 17 C 1.47445 * 120.00136 * 355.98050 * 15 14 13 18 18 C 1.38958 * 121.17118 * 36.17392 * 17 15 14 19 19 N 1.32198 * 121.31413 * 179.74508 * 18 17 15 20 20 C 1.31199 * 123.69768 * 0.56621 * 19 18 17 21 21 C 1.40375 * 120.91551 * 359.71127 * 20 19 18 22 22 C 1.40397 * 122.14461 * 179.97438 * 21 20 19 23 23 C 1.36239 * 119.48521 * 180.02562 * 22 21 20 24 24 C 1.39293 * 121.10558 * 0.02562 * 23 22 21 25 25 C 1.36446 * 120.94785 * 359.97438 * 24 23 22 26 26 C 1.39691 * 119.43402 * 359.97438 * 25 24 23 27 27 C 1.47014 * 108.70213 * 335.87163 * 14 13 12 28 28 H 0.96997 * 120.00304 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00339 * 359.97438 * 9 7 2 30 30 H 1.09001 * 111.00773 * 324.21321 * 12 10 9 31 31 H 1.09002 * 111.00648 * 88.02577 * 12 10 9 32 32 H 1.09004 * 110.36331 * 155.85083 * 13 12 10 33 33 H 1.08998 * 110.36409 * 278.16900 * 13 12 10 34 34 H 1.07995 * 119.34246 * 0.02562 * 18 17 15 35 35 H 1.08003 * 119.53808 * 179.69757 * 20 19 18 36 36 H 1.07998 * 120.25640 * 0.05182 * 22 21 20 37 37 H 1.07999 * 119.44169 * 179.97438 * 23 22 21 38 38 H 1.08001 * 119.52433 * 179.97438 * 24 23 22 39 39 H 1.08002 * 120.27796 * 180.02562 * 25 24 23 40 40 H 1.09005 * 109.88136 * 241.63591 * 27 14 13 41 41 H 1.09002 * 109.87942 * 120.47572 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0466 1.4000 5 1 3.5477 1.4404 -0.7000 6 1 1.4475 2.6527 -0.7002 7 6 2.0104 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2019 0.0011 10 6 4.1122 -2.4706 0.0011 11 1 3.5540 -3.2367 0.5391 12 6 5.5256 -2.2885 0.6149 13 6 6.3127 -3.4325 -0.0716 14 7 5.7751 -3.4903 -1.4432 15 6 6.4209 -3.9799 -2.5200 16 8 5.8520 -4.0448 -3.5927 17 6 7.8174 -4.4369 -2.3973 18 6 8.2672 -5.0745 -1.2475 19 7 9.5173 -5.4899 -1.1365 20 6 10.4228 -5.3315 -2.0725 21 6 10.1045 -4.6979 -3.2841 22 6 11.0530 -4.5143 -4.3028 23 6 10.6851 -3.8915 -5.4573 24 6 9.3832 -3.4330 -5.6442 25 6 8.4363 -3.5948 -4.6752 26 6 8.7795 -4.2302 -3.4794 27 6 4.4181 -2.9246 -1.4418 28 1 -0.4850 0.8400 -0.0004 29 1 3.8647 -0.3619 0.0007 30 1 5.9426 -1.3158 0.3538 31 1 5.5023 -2.4236 1.6962 32 1 7.3778 -3.2016 -0.0910 33 1 6.1376 -4.3764 0.4446 34 1 7.5806 -5.2380 -0.4301 35 1 11.4271 -5.6933 -1.9085 36 1 12.0663 -4.8644 -4.1724 37 1 11.4154 -3.7502 -6.2403 38 1 9.1194 -2.9423 -6.5695 39 1 7.4299 -3.2354 -4.8317 40 1 3.6998 -3.6836 -1.7518 41 1 4.3721 -2.0700 -2.1169 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970777091.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:34:56 Heat of formation + Delta-G solvation = 25.961116 kcal Electronic energy + Delta-G solvation = -24800.455851 eV Core-core repulsion = 21258.889076 eV Total energy + Delta-G solvation = -3541.566775 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -42.03980 -40.73318 -38.80471 -38.35702 -36.11685 -34.06250 -33.46324 -32.21513 -31.58418 -30.87727 -29.22573 -26.56862 -25.24293 -24.67115 -23.96453 -23.42302 -21.86760 -20.68980 -19.78669 -19.32712 -18.49742 -18.08477 -17.68291 -16.92243 -16.69620 -16.38086 -15.81137 -15.76078 -15.51533 -15.12643 -14.97076 -14.85178 -14.49937 -14.35109 -14.05563 -13.89905 -13.66865 -13.30613 -13.20063 -13.02875 -12.91213 -12.61698 -12.38267 -12.30690 -12.18760 -11.88316 -11.65431 -11.35877 -11.10428 -11.06680 -10.49341 -10.12820 -9.81692 -9.44240 -9.16474 -8.06345 -5.42487 -0.94108 -0.16704 0.62373 1.35951 1.39578 1.45938 1.55357 1.78601 2.07419 2.44985 2.99098 3.14943 3.23711 3.39341 3.47533 3.51670 3.66292 3.68605 3.80936 3.85891 3.99944 4.20160 4.24791 4.25392 4.27330 4.38611 4.51962 4.54290 4.59635 4.72204 4.79701 4.89113 4.99191 5.04332 5.10895 5.12824 5.26998 5.37046 5.45663 5.50341 5.72919 5.84558 6.17338 6.35186 6.79906 6.92694 7.01998 7.75403 7.94014 9.14700 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.021663 B = 0.003155 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.230901 B = 8872.400810 C = 9422.362376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.060 4.060 3 Si 0.955 3.045 4 H -0.270 1.270 5 H -0.257 1.257 6 H -0.298 1.298 7 C -0.238 4.238 8 H 0.060 0.940 9 N -0.739 5.739 10 C 0.170 3.830 11 H 0.079 0.921 12 C -0.131 4.131 13 C 0.096 3.904 14 N -0.605 5.605 15 C 0.571 3.429 16 O -0.581 6.581 17 C -0.196 4.196 18 C 0.125 3.875 19 N -0.514 5.514 20 C 0.190 3.810 21 C -0.135 4.135 22 C -0.068 4.068 23 C -0.124 4.124 24 C -0.085 4.085 25 C -0.148 4.148 26 C -0.009 4.009 27 C 0.093 3.907 28 H 0.259 0.741 29 H 0.368 0.632 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.177 0.823 35 H 0.213 0.787 36 H 0.182 0.818 37 H 0.165 0.835 38 H 0.144 0.856 39 H 0.111 0.889 40 H 0.047 0.953 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.010 -10.230 -4.655 32.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.252 4.252 3 Si 0.782 3.218 4 H -0.196 1.196 5 H -0.181 1.181 6 H -0.225 1.225 7 C -0.369 4.369 8 H 0.078 0.922 9 N -0.381 5.381 10 C 0.060 3.940 11 H 0.097 0.903 12 C -0.170 4.170 13 C -0.025 4.025 14 N -0.337 5.337 15 C 0.361 3.639 16 O -0.462 6.462 17 C -0.201 4.201 18 C -0.019 4.019 19 N -0.221 5.221 20 C 0.019 3.981 21 C -0.137 4.137 22 C -0.087 4.087 23 C -0.142 4.142 24 C -0.104 4.104 25 C -0.166 4.166 26 C -0.015 4.015 27 C -0.033 4.033 28 H 0.068 0.932 29 H 0.202 0.798 30 H 0.093 0.907 31 H 0.134 0.866 32 H 0.114 0.886 33 H 0.122 0.878 34 H 0.194 0.806 35 H 0.229 0.771 36 H 0.200 0.800 37 H 0.183 0.817 38 H 0.162 0.838 39 H 0.129 0.871 40 H 0.065 0.935 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 30.570 -10.750 -4.405 32.703 hybrid contribution -1.352 1.671 -1.213 2.468 sum 29.218 -9.079 -5.618 31.107 Atomic orbital electron populations 1.69881 1.07186 1.26817 1.59199 1.25516 0.96084 1.01330 1.02277 0.85422 0.78383 0.79625 0.78382 1.19608 1.18146 1.22528 1.19054 0.82393 0.93639 1.41791 0.92152 1.42683 1.02599 1.03475 1.89313 1.21390 0.92948 0.88355 0.91272 0.90279 1.23103 0.93089 0.98645 1.02115 1.22840 0.99320 1.00372 0.79994 1.48488 1.16488 1.59423 1.09327 1.18036 0.85961 0.77297 0.82622 1.90737 1.69148 1.57780 1.28583 1.21701 0.92872 1.07709 0.97806 1.23225 0.92840 0.91132 0.94659 1.67292 1.02113 1.20001 1.32706 1.24069 0.99862 0.88294 0.85890 1.19297 0.93061 1.02679 0.98664 1.21523 0.99989 0.95993 0.91187 1.21395 0.95974 0.97739 0.99071 1.21451 0.93494 0.96690 0.98729 1.21144 1.00666 1.00759 0.94014 1.19112 0.93010 0.96147 0.93188 1.22815 0.82135 0.96848 1.01504 0.93230 0.79770 0.90721 0.86603 0.88575 0.87827 0.80606 0.77052 0.80047 0.81720 0.83821 0.87128 0.93492 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.83 13.97 21.65 0.30 -62.53 16 2 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 3 Si 0.95 45.13 27.74 68.60 1.90 47.03 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.26 -11.09 6.52 99.48 0.65 -10.44 16 6 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 7 C -0.24 -13.34 10.44 84.03 0.88 -12.46 16 8 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 9 N -0.74 -33.30 4.95 -317.34 -1.57 -34.87 16 10 C 0.17 6.06 3.61 46.18 0.17 6.23 16 11 H 0.08 2.83 8.09 -2.39 -0.02 2.81 16 12 C -0.13 -3.24 6.71 31.99 0.21 -3.03 16 13 C 0.10 2.08 5.15 86.86 0.45 2.53 16 14 N -0.61 -18.92 3.33 -815.65 -2.71 -21.64 16 15 C 0.57 19.57 7.33 86.67 0.64 20.20 16 16 O -0.58 -24.64 15.19 -4.03 -0.06 -24.70 16 17 C -0.20 -5.39 5.68 -18.59 -0.11 -5.49 16 18 C 0.12 2.72 9.12 84.81 0.77 3.49 16 19 N -0.51 -9.79 10.22 -193.73 -1.98 -11.77 16 20 C 0.19 2.63 11.00 85.31 0.94 3.57 16 21 C -0.13 -2.31 5.74 -21.34 -0.12 -2.43 16 22 C -0.07 -0.69 9.82 22.33 0.22 -0.47 16 23 C -0.12 -1.41 9.94 22.06 0.22 -1.19 16 24 C -0.08 -1.52 9.96 22.10 0.22 -1.30 16 25 C -0.15 -3.90 9.27 22.20 0.21 -3.69 16 26 C -0.01 -0.24 5.90 -19.94 -0.12 -0.36 16 27 C 0.09 3.51 6.62 86.73 0.57 4.08 16 28 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 29 H 0.37 15.93 5.62 -92.71 -0.52 15.41 16 30 H 0.07 1.89 8.01 -2.39 -0.02 1.87 16 31 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.10 1.76 6.62 -2.39 -0.02 1.74 16 33 H 0.10 1.70 7.29 -2.39 -0.02 1.68 16 34 H 0.18 3.16 5.51 -2.91 -0.02 3.14 16 35 H 0.21 0.82 8.06 -2.91 -0.02 0.79 16 36 H 0.18 0.17 8.06 -2.91 -0.02 0.15 16 37 H 0.17 0.69 8.06 -2.91 -0.02 0.66 16 38 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 39 H 0.11 3.63 6.11 -2.91 -0.02 3.61 16 40 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.04 1.87 8.03 -2.39 -0.02 1.85 16 Total: -1.00 -80.96 338.09 1.98 -78.98 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.49 Total: 22.87 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 5.61 Total: 6.63 kcal Atomic # 7 Polarization: -124.85 SS G_CDS: -5.96 Total: -130.81 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.06 Total: -24.70 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.90 Total: 47.03 kcal Total: -80.96 1.98 -78.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970777091.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.942 kcal (2) G-P(sol) polarization free energy of solvation -80.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds