Wall clock time and date at job start Fri Apr 10 2020 22:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 120.00027 * 2 1 4 4 H 1.48494 * 109.47247 * 239.99976 * 3 2 1 5 5 H 1.48503 * 109.47157 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46947 * 120.00225 * 3 2 1 7 7 C 1.38813 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99756 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00512 * 359.97438 * 7 2 1 10 10 C 1.47025 * 125.64360 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.26530 * 178.89914 * 10 9 7 12 12 C 1.55150 * 102.94387 * 337.80272 * 11 10 9 13 13 H 1.09006 * 111.00300 * 153.61678 * 12 11 10 14 14 N 1.46496 * 111.00982 * 277.43248 * 12 11 10 15 15 C 1.34777 * 120.00258 * 205.00325 * 14 12 11 16 16 O 1.21601 * 120.00027 * 359.97438 * 15 14 12 17 17 C 1.47436 * 119.99977 * 179.97438 * 15 14 12 18 18 C 1.38743 * 120.33126 * 359.72058 * 17 15 14 19 19 C 1.38876 * 120.72255 * 179.69157 * 18 17 15 20 20 C 1.36353 * 121.05702 * 0.61241 * 19 18 17 21 21 C 1.40438 * 120.08345 * 359.67465 * 20 19 18 22 22 C 1.40809 * 121.26236 * 180.02562 * 21 20 19 23 23 C 1.36634 * 118.15365 * 180.02562 * 22 21 20 24 24 C 1.39229 * 119.90885 * 359.97438 * 23 22 21 25 25 N 1.31235 * 121.69736 * 359.97438 * 24 23 22 26 26 C 1.33352 * 121.35058 * 0.02562 * 25 24 23 27 27 C 1.47416 * 125.64886 * 179.97438 * 9 7 2 28 28 H 0.97001 * 119.99588 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.88442 * 59.48028 * 10 9 7 30 30 H 1.09005 * 109.88400 * 298.31022 * 10 9 7 31 31 H 1.09005 * 110.71140 * 219.44284 * 11 10 9 32 32 H 1.09004 * 110.87633 * 96.24405 * 11 10 9 33 33 H 0.96999 * 119.99694 * 24.99715 * 14 12 11 34 34 H 1.07998 * 119.64050 * 359.97438 * 18 17 15 35 35 H 1.08000 * 119.46653 * 180.30889 * 19 18 17 36 36 H 1.07997 * 119.95627 * 179.69852 * 20 19 18 37 37 H 1.08002 * 120.92101 * 0.04739 * 22 21 20 38 38 H 1.07998 * 120.04639 * 179.97438 * 23 22 21 39 39 H 1.08002 * 119.15109 * 179.97438 * 24 23 22 40 40 H 1.09004 * 110.36699 * 85.33382 * 27 9 7 41 41 H 1.08995 * 110.37123 * 323.01198 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4484 -4.0441 -0.0289 12 6 0.8519 -4.6555 -0.6144 13 1 0.9834 -5.6853 -0.2822 14 7 0.8585 -4.5735 -2.0770 15 6 1.5902 -5.4463 -2.7976 16 8 2.2454 -6.3015 -2.2337 17 6 1.5964 -5.3641 -4.2697 18 6 0.8469 -4.3947 -4.9204 19 6 0.8517 -4.3059 -6.3063 20 6 1.5809 -5.1737 -7.0643 21 6 2.3491 -6.1739 -6.4465 22 6 3.1117 -7.0827 -7.2049 23 6 3.8353 -8.0308 -6.5383 24 6 3.8041 -8.0769 -5.1471 25 7 3.0924 -7.2268 -4.4448 26 6 2.3645 -6.2779 -5.0346 27 6 1.9335 -3.7311 -0.0016 28 1 -0.4849 0.8401 0.0004 29 1 -0.5576 -2.0512 -0.8835 30 1 -0.5543 -2.0855 0.9019 31 1 -1.2985 -4.2507 -0.6791 32 1 -0.6332 -4.4216 0.9769 33 1 0.3361 -3.8911 -2.5268 34 1 0.2568 -3.6987 -4.3427 35 1 0.2647 -3.5402 -6.7917 36 1 1.5679 -5.0915 -8.1410 37 1 3.1246 -7.0315 -8.2837 38 1 4.4307 -8.7434 -7.0897 39 1 4.3804 -8.8316 -4.6327 40 1 2.1665 -4.0429 1.0166 41 1 2.8330 -3.7399 -0.6171 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015130443.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:01 Heat of formation + Delta-G solvation = 59.148564 kcal Electronic energy + Delta-G solvation = -25079.252832 eV Core-core repulsion = 21539.125173 eV Total energy + Delta-G solvation = -3540.127659 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.03747 -39.22766 -37.27206 -36.84577 -33.65815 -33.51651 -31.86899 -30.64261 -30.22758 -29.05171 -27.17570 -24.83527 -24.40692 -23.58842 -23.25082 -20.57366 -20.04140 -19.74081 -18.36012 -17.80673 -16.98302 -16.74430 -16.04205 -15.63362 -14.87171 -14.83217 -14.61651 -14.21180 -14.11739 -13.98385 -13.67177 -13.38861 -13.12231 -12.95069 -12.36490 -12.23661 -11.89738 -11.83656 -11.76701 -11.49025 -10.94348 -10.86616 -10.68552 -10.57594 -10.30756 -10.14086 -9.92074 -9.78503 -9.64584 -9.07258 -8.95606 -8.68204 -8.50816 -8.32307 -6.79387 -5.70191 -3.02311 0.04417 0.67482 1.64995 2.66909 3.41014 3.41552 3.45904 3.47146 3.52117 4.12716 4.18069 4.41901 4.52034 4.55839 4.66290 4.72155 4.88750 4.97127 5.13278 5.28617 5.37314 5.47955 5.50328 5.58239 5.71852 5.77104 5.82853 5.87427 5.89117 6.04281 6.16501 6.26591 6.30856 6.43008 6.54086 6.59020 6.63376 6.76069 7.14202 7.55272 7.58462 7.81065 7.90126 8.02350 8.26995 8.69017 9.24294 9.84176 10.50450 11.41705 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.017480 B = 0.003573 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.402169 B = 7834.668319 C = 8400.834242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.223 4.223 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.176 3.824 11 C -0.154 4.154 12 C 0.131 3.869 13 H 0.091 0.909 14 N -0.704 5.704 15 C 0.551 3.449 16 O -0.508 6.508 17 C -0.102 4.102 18 C -0.061 4.061 19 C -0.121 4.121 20 C -0.078 4.078 21 C -0.112 4.112 22 C -0.060 4.060 23 C -0.177 4.177 24 C 0.128 3.872 25 N -0.434 5.434 26 C 0.161 3.839 27 C 0.125 3.875 28 H 0.252 0.748 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.399 0.601 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.159 0.841 40 H 0.028 0.972 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.821 -13.820 -16.138 21.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.352 4.352 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.051 3.949 11 C -0.193 4.193 12 C 0.025 3.975 13 H 0.109 0.891 14 N -0.356 5.356 15 C 0.337 3.663 16 O -0.384 6.384 17 C -0.105 4.105 18 C -0.082 4.082 19 C -0.139 4.139 20 C -0.097 4.097 21 C -0.114 4.114 22 C -0.086 4.086 23 C -0.197 4.197 24 C -0.045 4.045 25 N -0.140 5.140 26 C 0.038 3.962 27 C -0.002 4.002 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.234 0.766 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.176 0.824 40 H 0.046 0.954 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.163 -14.166 -14.737 20.475 hybrid contribution 0.249 1.431 -1.204 1.887 sum 1.412 -12.735 -15.941 20.452 Atomic orbital electron populations 1.69946 1.04780 1.25006 1.57528 1.24759 0.95714 0.97508 1.02491 0.86212 0.78448 0.83285 0.77910 1.21280 1.21635 1.21226 1.19026 0.90421 0.82446 1.43291 0.90641 1.44475 1.01481 0.99908 1.87216 1.21165 0.84566 0.87945 1.01173 1.23228 0.95756 1.00021 1.00277 1.22113 0.97228 0.99473 0.78673 0.89114 1.45781 1.48757 1.33760 1.07257 1.17858 0.80393 0.82077 0.86013 1.90816 1.40858 1.35184 1.71521 1.20032 0.99521 0.96987 0.93994 1.21575 0.95863 0.95709 0.95040 1.20879 0.99872 0.99640 0.93510 1.21130 0.94950 0.93526 1.00083 1.18833 1.00286 0.98349 0.93923 1.21436 0.93985 0.93133 1.00095 1.21942 1.01287 1.00274 0.96231 1.23179 0.94470 0.95871 0.91003 1.68344 1.04804 1.02113 1.38771 1.18628 0.94785 0.93581 0.89191 1.21951 0.94896 0.86315 0.97071 0.93815 0.93672 0.93791 0.91658 0.90942 0.76592 0.84389 0.84697 0.84967 0.84399 0.84595 0.82402 0.95445 0.93937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.65 10.31 55.49 0.57 -26.08 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.22 -6.27 10.28 -15.06 -0.15 -6.43 16 8 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 9 N -0.60 -15.38 3.39 -170.07 -0.58 -15.96 16 10 C 0.18 4.13 5.36 -3.06 -0.02 4.11 16 11 C -0.15 -2.79 6.55 -24.90 -0.16 -2.95 16 12 C 0.13 2.44 3.43 -65.79 -0.23 2.22 16 13 H 0.09 1.67 7.54 -51.93 -0.39 1.27 16 14 N -0.70 -12.39 5.14 -52.80 -0.27 -12.66 16 15 C 0.55 10.16 7.76 -12.51 -0.10 10.07 16 16 O -0.51 -10.89 14.83 5.28 0.08 -10.81 16 17 C -0.10 -1.60 5.91 -104.61 -0.62 -2.22 16 18 C -0.06 -0.77 9.52 -39.16 -0.37 -1.14 16 19 C -0.12 -1.21 9.93 -40.02 -0.40 -1.61 16 20 C -0.08 -0.75 9.75 -39.43 -0.38 -1.13 16 21 C -0.11 -1.33 5.74 -106.82 -0.61 -1.94 16 22 C -0.06 -0.55 9.90 -39.19 -0.39 -0.94 16 23 C -0.18 -1.57 10.03 -39.79 -0.40 -1.97 16 24 C 0.13 1.50 11.15 -17.44 -0.19 1.30 16 25 N -0.43 -7.03 8.44 -10.76 -0.09 -7.12 16 26 C 0.16 2.49 6.61 -84.58 -0.56 1.93 16 27 C 0.12 2.75 6.93 -2.53 -0.02 2.74 16 28 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.05 1.14 7.38 -51.93 -0.38 0.75 16 30 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.40 6.51 6.69 -40.82 -0.27 6.24 16 34 H 0.14 1.57 6.37 -52.49 -0.33 1.24 16 35 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 39 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 341.79 15.07 5.15 5.15 Total: -1.00 -34.89 341.79 -9.98 -44.87 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.12 Total: 3.76 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -4.70 Total: 1.69 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: -0.37 Total: -61.82 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.89 -9.98 -44.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015130443.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.018 kcal (2) G-P(sol) polarization free energy of solvation -34.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds