Wall clock time and date at job start Fri Apr 10 2020 22:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 120.00027 * 2 1 4 4 H 1.48494 * 109.47247 * 239.99976 * 3 2 1 5 5 H 1.48503 * 109.47157 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46947 * 120.00225 * 3 2 1 7 7 C 1.38813 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99756 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00512 * 359.97438 * 7 2 1 10 10 C 1.47025 * 125.64360 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.26530 * 178.89914 * 10 9 7 12 12 C 1.55150 * 102.94387 * 337.80272 * 11 10 9 13 13 H 1.09006 * 111.00300 * 153.61678 * 12 11 10 14 14 N 1.46496 * 111.00982 * 277.43248 * 12 11 10 15 15 C 1.34777 * 120.00258 * 205.00325 * 14 12 11 16 16 O 1.21601 * 120.00027 * 359.97438 * 15 14 12 17 17 C 1.47436 * 119.99977 * 179.97438 * 15 14 12 18 18 C 1.38743 * 120.33126 * 359.72058 * 17 15 14 19 19 C 1.38876 * 120.72255 * 179.69157 * 18 17 15 20 20 C 1.36353 * 121.05702 * 0.61241 * 19 18 17 21 21 C 1.40438 * 120.08345 * 359.67465 * 20 19 18 22 22 C 1.40809 * 121.26236 * 180.02562 * 21 20 19 23 23 C 1.36634 * 118.15365 * 180.02562 * 22 21 20 24 24 C 1.39229 * 119.90885 * 359.97438 * 23 22 21 25 25 N 1.31235 * 121.69736 * 359.97438 * 24 23 22 26 26 C 1.33352 * 121.35058 * 0.02562 * 25 24 23 27 27 C 1.47416 * 125.64886 * 179.97438 * 9 7 2 28 28 H 0.97001 * 119.99588 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.88442 * 59.48028 * 10 9 7 30 30 H 1.09005 * 109.88400 * 298.31022 * 10 9 7 31 31 H 1.09005 * 110.71140 * 219.44284 * 11 10 9 32 32 H 1.09004 * 110.87633 * 96.24405 * 11 10 9 33 33 H 0.96999 * 119.99694 * 24.99715 * 14 12 11 34 34 H 1.07998 * 119.64050 * 359.97438 * 18 17 15 35 35 H 1.08000 * 119.46653 * 180.30889 * 19 18 17 36 36 H 1.07997 * 119.95627 * 179.69852 * 20 19 18 37 37 H 1.08002 * 120.92101 * 0.04739 * 22 21 20 38 38 H 1.07998 * 120.04639 * 179.97438 * 23 22 21 39 39 H 1.08002 * 119.15109 * 179.97438 * 24 23 22 40 40 H 1.09004 * 110.36699 * 85.33382 * 27 9 7 41 41 H 1.08995 * 110.37123 * 323.01198 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4484 -4.0441 -0.0289 12 6 0.8519 -4.6555 -0.6144 13 1 0.9834 -5.6853 -0.2822 14 7 0.8585 -4.5735 -2.0770 15 6 1.5902 -5.4463 -2.7976 16 8 2.2454 -6.3015 -2.2337 17 6 1.5964 -5.3641 -4.2697 18 6 0.8469 -4.3947 -4.9204 19 6 0.8517 -4.3059 -6.3063 20 6 1.5809 -5.1737 -7.0643 21 6 2.3491 -6.1739 -6.4465 22 6 3.1117 -7.0827 -7.2049 23 6 3.8353 -8.0308 -6.5383 24 6 3.8041 -8.0769 -5.1471 25 7 3.0924 -7.2268 -4.4448 26 6 2.3645 -6.2779 -5.0346 27 6 1.9335 -3.7311 -0.0016 28 1 -0.4849 0.8401 0.0004 29 1 -0.5576 -2.0512 -0.8835 30 1 -0.5543 -2.0855 0.9019 31 1 -1.2985 -4.2507 -0.6791 32 1 -0.6332 -4.4216 0.9769 33 1 0.3361 -3.8911 -2.5268 34 1 0.2568 -3.6987 -4.3427 35 1 0.2647 -3.5402 -6.7917 36 1 1.5679 -5.0915 -8.1410 37 1 3.1246 -7.0315 -8.2837 38 1 4.4307 -8.7434 -7.0897 39 1 4.3804 -8.8316 -4.6327 40 1 2.1665 -4.0429 1.0166 41 1 2.8330 -3.7399 -0.6171 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015130443.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:01 Heat of formation + Delta-G solvation = 35.992691 kcal Electronic energy + Delta-G solvation = -25080.256946 eV Core-core repulsion = 21539.125173 eV Total energy + Delta-G solvation = -3541.131773 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.96190 -40.60699 -38.79724 -37.88201 -35.39028 -34.43041 -33.61787 -31.53682 -31.38587 -30.71864 -28.90994 -26.53212 -25.57761 -24.46942 -24.31692 -22.08882 -21.72099 -21.21871 -19.27179 -19.06298 -18.59876 -17.81804 -17.27998 -16.89357 -16.62184 -16.11250 -15.68812 -15.68153 -15.50853 -15.05057 -14.98837 -14.74060 -14.11443 -13.98758 -13.84399 -13.81177 -13.56436 -13.05943 -12.90436 -12.79329 -12.72121 -12.33395 -12.26184 -12.10597 -12.04452 -11.81839 -11.60458 -11.46732 -11.04573 -10.71853 -10.11766 -10.04797 -9.79728 -9.27394 -8.86615 -7.85194 -5.19688 -0.81903 -0.15867 0.77876 1.45268 1.47779 1.54334 1.78927 2.16044 2.28012 2.49081 3.18049 3.32989 3.34954 3.55439 3.66476 3.76463 3.80035 3.89112 3.99121 4.07094 4.07403 4.19134 4.30556 4.44242 4.51771 4.65932 4.69123 4.72948 4.87696 4.92805 4.96059 5.01222 5.02982 5.11912 5.22854 5.36454 5.42776 5.54992 5.60241 5.68123 5.75734 5.85388 6.19359 6.60045 7.09516 7.11532 7.31356 7.76050 8.41176 9.24506 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.017480 B = 0.003573 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.402169 B = 7834.668319 C = 8400.834242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.056 4.056 3 Si 0.975 3.025 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.246 4.246 8 H 0.070 0.930 9 N -0.620 5.620 10 C 0.185 3.815 11 C -0.133 4.133 12 C 0.142 3.858 13 H 0.098 0.902 14 N -0.701 5.701 15 C 0.549 3.451 16 O -0.550 6.550 17 C -0.151 4.151 18 C -0.052 4.052 19 C -0.133 4.133 20 C -0.053 4.053 21 C -0.131 4.131 22 C -0.049 4.049 23 C -0.175 4.175 24 C 0.118 3.882 25 N -0.499 5.499 26 C 0.133 3.867 27 C 0.124 3.876 28 H 0.249 0.751 29 H 0.023 0.977 30 H 0.011 0.989 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.404 0.596 34 H 0.141 0.859 35 H 0.169 0.831 36 H 0.179 0.821 37 H 0.184 0.816 38 H 0.177 0.823 39 H 0.173 0.827 40 H 0.031 0.969 41 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.824 -14.222 -19.590 24.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.250 4.250 3 Si 0.804 3.196 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.347 5.347 10 C 0.061 3.939 11 C -0.172 4.172 12 C 0.036 3.964 13 H 0.116 0.884 14 N -0.353 5.353 15 C 0.337 3.663 16 O -0.428 6.428 17 C -0.155 4.155 18 C -0.072 4.072 19 C -0.150 4.150 20 C -0.072 4.072 21 C -0.133 4.133 22 C -0.075 4.075 23 C -0.194 4.194 24 C -0.053 4.053 25 N -0.207 5.207 26 C 0.010 3.990 27 C -0.003 4.003 28 H 0.058 0.942 29 H 0.041 0.959 30 H 0.029 0.971 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.240 0.760 34 H 0.159 0.841 35 H 0.186 0.814 36 H 0.196 0.804 37 H 0.201 0.799 38 H 0.194 0.806 39 H 0.190 0.810 40 H 0.049 0.951 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 1.161 -14.581 -18.201 23.350 hybrid contribution 0.324 1.492 -0.226 1.544 sum 1.485 -13.088 -18.428 22.651 Atomic orbital electron populations 1.70139 1.05868 1.25385 1.57896 1.25517 0.96646 1.00440 1.02351 0.85212 0.77258 0.79197 0.77983 1.20585 1.21442 1.20830 1.19306 0.90625 0.83935 1.43655 0.91216 1.44691 1.02523 1.00365 1.87091 1.20960 0.83264 0.91226 0.98480 1.23089 0.96237 0.95746 1.02093 1.21926 0.96089 0.98879 0.79480 0.88363 1.45745 1.48899 1.33957 1.06705 1.18401 0.79249 0.81141 0.87516 1.90766 1.42551 1.36816 1.72659 1.19934 1.03217 1.00047 0.92260 1.21772 0.94455 0.94313 0.96662 1.21250 1.00675 1.00881 0.92202 1.21679 0.92082 0.91184 1.02207 1.19197 1.01509 0.99956 0.92658 1.21989 0.91958 0.91432 1.02072 1.22313 1.01279 1.00926 0.94912 1.23676 0.93534 0.95189 0.92927 1.68252 1.07219 1.04128 1.41084 1.18899 0.95260 0.93754 0.91069 1.22026 0.95199 0.85894 0.97147 0.94208 0.95864 0.97054 0.88798 0.89052 0.75956 0.84128 0.81366 0.80385 0.79859 0.80561 0.80986 0.95099 0.96016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.56 10.31 21.65 0.22 -55.33 16 2 C -0.06 -3.19 5.49 84.86 0.47 -2.72 16 3 Si 0.98 46.12 29.55 68.60 2.03 48.15 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 7 C -0.25 -14.23 10.28 84.03 0.86 -13.36 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 9 N -0.62 -32.62 3.39 -691.98 -2.35 -34.97 16 10 C 0.19 8.91 5.36 86.73 0.47 9.37 16 11 C -0.13 -4.76 6.55 31.78 0.21 -4.55 16 12 C 0.14 5.43 3.43 46.38 0.16 5.59 16 13 H 0.10 3.66 7.54 -2.38 -0.02 3.64 16 14 N -0.70 -25.58 5.14 -439.22 -2.26 -27.84 16 15 C 0.55 21.38 7.76 86.67 0.67 22.06 16 16 O -0.55 -25.09 14.83 -4.03 -0.06 -25.15 16 17 C -0.15 -4.95 5.91 -19.86 -0.12 -5.06 16 18 C -0.05 -1.28 9.52 22.54 0.21 -1.07 16 19 C -0.13 -2.29 9.93 21.98 0.22 -2.08 16 20 C -0.05 -0.81 9.75 22.37 0.22 -0.59 16 21 C -0.13 -2.81 5.74 -21.29 -0.12 -2.93 16 22 C -0.05 -0.70 9.90 22.52 0.22 -0.47 16 23 C -0.17 -2.59 10.03 22.13 0.22 -2.37 16 24 C 0.12 2.75 11.15 85.02 0.95 3.70 16 25 N -0.50 -16.86 8.44 -187.96 -1.59 -18.44 16 26 C 0.13 4.17 6.61 40.61 0.27 4.44 16 27 C 0.12 5.68 6.93 86.86 0.60 6.28 16 28 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 29 H 0.02 1.20 7.38 -2.39 -0.02 1.19 16 30 H 0.01 0.61 7.51 -2.38 -0.02 0.59 16 31 H 0.09 2.86 8.14 -2.38 -0.02 2.84 16 32 H 0.09 2.96 8.14 -2.38 -0.02 2.94 16 33 H 0.40 13.60 6.69 -92.71 -0.62 12.98 16 34 H 0.14 3.22 6.37 -2.91 -0.02 3.21 16 35 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 37 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 38 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 39 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 40 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -81.61 341.79 1.95 -79.66 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.44 Total: 17.69 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 5.51 Total: 16.23 kcal Atomic # 7 Polarization: -130.61 SS G_CDS: -5.97 Total: -136.58 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.06 Total: -25.15 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -81.61 1.95 -79.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015130443.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.652 kcal (2) G-P(sol) polarization free energy of solvation -81.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds