Wall clock time and date at job start Fri Apr 10 2020 22:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 119.99589 * 2 1 4 4 H 1.48506 * 109.47180 * 5.29175 * 3 2 1 5 5 H 1.48499 * 109.47162 * 125.29588 * 3 2 1 6 6 H 1.48508 * 109.47026 * 245.29670 * 3 2 1 7 7 C 1.38809 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99829 * 345.60902 * 7 2 1 9 9 N 1.36934 * 119.99876 * 165.60399 * 7 2 1 10 10 C 1.47018 * 125.64878 * 348.97978 * 9 7 2 11 11 C 1.54329 * 107.26830 * 181.02101 * 10 9 7 12 12 C 1.55157 * 102.94410 * 22.18949 * 11 10 9 13 13 H 1.08996 * 111.00114 * 206.39273 * 12 11 10 14 14 N 1.46496 * 111.00650 * 82.57131 * 12 11 10 15 15 C 1.34778 * 119.99857 * 154.99603 * 14 12 11 16 16 O 1.21594 * 120.00331 * 0.02562 * 15 14 12 17 17 C 1.47439 * 119.99650 * 180.02562 * 15 14 12 18 18 C 1.38749 * 120.33260 * 0.02562 * 17 15 14 19 19 C 1.38867 * 120.72184 * 179.97438 * 18 17 15 20 20 C 1.36361 * 121.05864 * 0.02562 * 19 18 17 21 21 C 1.40434 * 120.08456 * 359.97438 * 20 19 18 22 22 C 1.40807 * 121.26811 * 179.97438 * 21 20 19 23 23 C 1.36627 * 118.15458 * 179.97438 * 22 21 20 24 24 C 1.39231 * 119.91026 * 359.97438 * 23 22 21 25 25 N 1.31221 * 121.69696 * 359.97438 * 24 23 22 26 26 C 1.33350 * 121.35190 * 359.75199 * 25 24 23 27 27 C 1.47432 * 125.64439 * 168.66281 * 9 7 2 28 28 H 0.96993 * 119.99395 * 174.92913 * 1 2 3 29 29 H 1.08998 * 109.88209 * 300.42975 * 10 9 7 30 30 H 1.08994 * 109.88779 * 61.60345 * 10 9 7 31 31 H 1.08997 * 110.72315 * 140.55470 * 11 10 9 32 32 H 1.08996 * 110.71513 * 263.82415 * 11 10 9 33 33 H 0.96999 * 119.99920 * 335.00726 * 14 12 11 34 34 H 1.07997 * 119.64138 * 359.97438 * 18 17 15 35 35 H 1.07997 * 119.46792 * 180.02562 * 19 18 17 36 36 H 1.08001 * 119.95190 * 179.97438 * 20 19 18 37 37 H 1.08006 * 120.91897 * 0.02562 * 22 21 20 38 38 H 1.08000 * 120.04330 * 180.02562 * 23 22 21 39 39 H 1.08008 * 119.15063 * 180.02562 * 24 23 22 40 40 H 1.08999 * 110.36614 * 274.75277 * 27 9 7 41 41 H 1.08996 * 110.36422 * 37.07536 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2902 2.7436 0.1291 5 1 3.1983 1.6421 1.1427 6 1 3.0044 1.7540 -1.2720 7 6 2.0104 -1.2021 -0.0005 8 1 1.4958 -2.1229 0.2315 9 7 3.3475 -1.2205 -0.2954 10 6 4.1190 -0.0968 -0.8463 11 6 5.5699 -0.5869 -1.0368 12 6 5.4089 -2.1282 -1.1133 13 1 6.3190 -2.6326 -0.7889 14 7 5.0309 -2.5502 -2.4642 15 6 5.3208 -3.7968 -2.8866 16 8 5.8958 -4.5713 -2.1463 17 6 4.9408 -4.2214 -4.2465 18 6 4.2850 -3.3431 -5.0972 19 6 3.9239 -3.7343 -6.3797 20 6 4.2021 -4.9883 -6.8373 21 6 4.8645 -5.9090 -6.0092 22 6 5.1637 -7.2104 -6.4559 23 6 5.8105 -8.0539 -5.5975 24 6 6.1545 -7.6160 -4.3214 25 7 5.8743 -6.4018 -3.9102 26 6 5.2495 -5.5284 -4.7009 27 6 4.2532 -2.3684 -0.1067 28 1 -0.4849 -0.8367 -0.0742 29 1 3.7006 0.2046 -1.8066 30 1 4.0994 0.7425 -0.1512 31 1 5.9904 -0.1966 -1.9636 32 1 6.1870 -0.3054 -0.1835 33 1 4.5720 -1.9325 -3.0548 34 1 4.0529 -2.3443 -4.7582 35 1 3.4144 -3.0341 -7.0251 36 1 3.9127 -5.2738 -7.8379 37 1 4.8903 -7.5325 -7.4499 38 1 6.0553 -9.0587 -5.9087 39 1 6.6660 -8.2929 -3.6530 40 1 4.6340 -2.3873 0.9144 41 1 3.7374 -3.3004 -0.3375 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015130444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:05 Heat of formation + Delta-G solvation = 68.621026 kcal Electronic energy + Delta-G solvation = -25136.730239 eV Core-core repulsion = 21597.013336 eV Total energy + Delta-G solvation = -3539.716902 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.11393 -39.41698 -37.56776 -37.00501 -33.84362 -33.59082 -32.13274 -30.73026 -30.44251 -29.33060 -27.98368 -24.86807 -24.06973 -23.63640 -23.22710 -20.92685 -20.63606 -19.78575 -18.43975 -17.96373 -17.39052 -16.97672 -16.20898 -15.82711 -15.31802 -14.93631 -14.88834 -14.48868 -14.15015 -14.02009 -13.89220 -13.42751 -13.19171 -13.12299 -12.82221 -12.54551 -12.31733 -11.92506 -11.75945 -11.58062 -11.25942 -11.16312 -10.92079 -10.82608 -10.66119 -10.10428 -9.89430 -9.33511 -9.17194 -9.02199 -8.97702 -8.84735 -8.61322 -8.42291 -6.99927 -6.29130 -3.20115 -0.02836 0.60987 1.58098 2.59556 3.28943 3.37710 3.39283 3.50000 3.71455 4.04407 4.11464 4.34553 4.49186 4.59294 4.62745 4.66322 4.79800 4.89455 4.99612 5.03081 5.08175 5.23990 5.37728 5.43987 5.45588 5.56389 5.65100 5.70158 5.79689 5.88552 5.96451 6.08358 6.10523 6.16721 6.25058 6.25840 6.46136 6.56450 6.61072 6.72014 6.95239 7.68498 7.79170 7.90642 8.35886 8.54683 9.06848 9.57496 10.25153 11.21495 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.020907 B = 0.003555 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.941073 B = 7874.085560 C = 8335.115513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.024 4.024 3 Si 1.073 2.927 4 H -0.303 1.303 5 H -0.298 1.298 6 H -0.288 1.288 7 C -0.317 4.317 8 H 0.077 0.923 9 N -0.611 5.611 10 C 0.108 3.892 11 C -0.138 4.138 12 C 0.131 3.869 13 H 0.098 0.902 14 N -0.707 5.707 15 C 0.553 3.447 16 O -0.505 6.505 17 C -0.103 4.103 18 C -0.061 4.061 19 C -0.122 4.122 20 C -0.076 4.076 21 C -0.112 4.112 22 C -0.060 4.060 23 C -0.177 4.177 24 C 0.129 3.871 25 N -0.435 5.435 26 C 0.162 3.838 27 C 0.125 3.875 28 H 0.261 0.739 29 H 0.044 0.956 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.398 0.602 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.159 0.841 40 H 0.034 0.966 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.255 -10.966 -16.968 24.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.223 4.223 3 Si 0.908 3.092 4 H -0.231 1.231 5 H -0.227 1.227 6 H -0.215 1.215 7 C -0.445 4.445 8 H 0.095 0.905 9 N -0.339 5.339 10 C -0.017 4.017 11 C -0.176 4.176 12 C 0.026 3.974 13 H 0.116 0.884 14 N -0.360 5.360 15 C 0.339 3.661 16 O -0.380 6.380 17 C -0.107 4.107 18 C -0.081 4.081 19 C -0.140 4.140 20 C -0.095 4.095 21 C -0.114 4.114 22 C -0.086 4.086 23 C -0.197 4.197 24 C -0.044 4.044 25 N -0.142 5.142 26 C 0.039 3.961 27 C -0.002 4.002 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.233 0.767 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.176 0.824 40 H 0.051 0.949 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.579 -9.521 -15.455 22.669 hybrid contribution -0.417 -1.671 -1.154 2.073 sum 13.162 -11.192 -16.608 23.965 Atomic orbital electron populations 1.70888 1.05717 1.29202 1.51450 1.25863 0.96512 1.00837 0.99055 0.83797 0.73052 0.76193 0.76179 1.23145 1.22741 1.21516 1.20181 0.81703 0.96005 1.46563 0.90547 1.44850 1.05770 1.08541 1.74778 1.22008 0.90296 0.92102 0.97290 1.22922 0.97970 0.94423 1.02285 1.22151 0.98496 0.94591 0.82206 0.88405 1.45758 1.60332 1.13825 1.16043 1.17858 0.79948 0.82071 0.86239 1.90824 1.40098 1.51624 1.55432 1.19991 1.02283 0.93174 0.95255 1.21547 0.93990 0.99330 0.93276 1.20874 1.00442 0.96803 0.95891 1.21148 0.96116 0.93048 0.99141 1.18836 1.01651 0.95636 0.95274 1.21445 0.95395 0.91938 0.99797 1.21952 1.00795 1.01290 0.95643 1.23186 0.94692 0.92678 0.93823 1.68334 1.09839 1.02148 1.33858 1.18619 0.95011 0.93034 0.89478 1.22032 0.90569 0.92248 0.95369 0.92924 0.93846 0.95265 0.90727 0.89916 0.76698 0.84526 0.84649 0.84883 0.84329 0.84524 0.82350 0.94879 0.93324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.46 13.70 55.49 0.76 -28.70 16 2 C -0.02 -0.70 5.50 -17.43 -0.10 -0.80 16 3 Si 1.07 26.75 24.53 -169.99 -4.17 22.58 16 4 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 5 H -0.30 -7.24 6.84 56.52 0.39 -6.85 16 6 H -0.29 -6.41 5.43 56.52 0.31 -6.10 16 7 C -0.32 -9.19 10.56 -15.06 -0.16 -9.35 16 8 H 0.08 2.38 8.06 -52.48 -0.42 1.95 16 9 N -0.61 -14.98 3.32 -169.93 -0.56 -15.54 16 10 C 0.11 2.27 4.60 -3.06 -0.01 2.25 16 11 C -0.14 -2.20 6.55 -24.89 -0.16 -2.36 16 12 C 0.13 2.27 3.43 -65.66 -0.23 2.05 16 13 H 0.10 1.64 7.54 -51.93 -0.39 1.25 16 14 N -0.71 -11.61 5.15 -52.69 -0.27 -11.88 16 15 C 0.55 9.73 7.76 -12.51 -0.10 9.64 16 16 O -0.50 -10.42 14.83 5.28 0.08 -10.34 16 17 C -0.10 -1.56 5.91 -104.61 -0.62 -2.18 16 18 C -0.06 -0.72 9.52 -39.16 -0.37 -1.09 16 19 C -0.12 -1.16 9.93 -40.03 -0.40 -1.55 16 20 C -0.08 -0.69 9.75 -39.43 -0.38 -1.07 16 21 C -0.11 -1.28 5.74 -106.82 -0.61 -1.89 16 22 C -0.06 -0.52 9.90 -39.19 -0.39 -0.91 16 23 C -0.18 -1.51 10.03 -39.79 -0.40 -1.91 16 24 C 0.13 1.47 11.15 -17.44 -0.19 1.27 16 25 N -0.44 -6.86 8.44 -10.76 -0.09 -6.95 16 26 C 0.16 2.41 6.61 -84.58 -0.56 1.86 16 27 C 0.12 2.66 6.95 -2.41 -0.02 2.64 16 28 H 0.26 8.20 8.73 -40.82 -0.36 7.85 16 29 H 0.04 0.93 6.78 -51.93 -0.35 0.57 16 30 H 0.03 0.66 3.83 -51.93 -0.20 0.46 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.40 5.88 6.69 -40.82 -0.27 5.60 16 34 H 0.14 1.42 6.37 -52.49 -0.33 1.08 16 35 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 38 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 334.06 15.07 5.03 5.03 Total: -1.00 -37.13 334.06 -8.96 -46.09 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.04 Total: 3.14 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -4.70 Total: -3.43 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: -0.17 Total: -63.07 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 26.75 SS G_CDS: -4.17 Total: 22.58 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -37.13 -8.96 -46.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015130444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.714 kcal (2) G-P(sol) polarization free energy of solvation -37.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds