Wall clock time and date at job start Fri Apr 10 2020 22:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 119.99589 * 2 1 4 4 H 1.48506 * 109.47180 * 5.29175 * 3 2 1 5 5 H 1.48499 * 109.47162 * 125.29588 * 3 2 1 6 6 H 1.48508 * 109.47026 * 245.29670 * 3 2 1 7 7 C 1.38809 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99829 * 345.60902 * 7 2 1 9 9 N 1.36934 * 119.99876 * 165.60399 * 7 2 1 10 10 C 1.47018 * 125.64878 * 348.97978 * 9 7 2 11 11 C 1.54329 * 107.26830 * 181.02101 * 10 9 7 12 12 C 1.55157 * 102.94410 * 22.18949 * 11 10 9 13 13 H 1.08996 * 111.00114 * 206.39273 * 12 11 10 14 14 N 1.46496 * 111.00650 * 82.57131 * 12 11 10 15 15 C 1.34778 * 119.99857 * 154.99603 * 14 12 11 16 16 O 1.21594 * 120.00331 * 0.02562 * 15 14 12 17 17 C 1.47439 * 119.99650 * 180.02562 * 15 14 12 18 18 C 1.38749 * 120.33260 * 0.02562 * 17 15 14 19 19 C 1.38867 * 120.72184 * 179.97438 * 18 17 15 20 20 C 1.36361 * 121.05864 * 0.02562 * 19 18 17 21 21 C 1.40434 * 120.08456 * 359.97438 * 20 19 18 22 22 C 1.40807 * 121.26811 * 179.97438 * 21 20 19 23 23 C 1.36627 * 118.15458 * 179.97438 * 22 21 20 24 24 C 1.39231 * 119.91026 * 359.97438 * 23 22 21 25 25 N 1.31221 * 121.69696 * 359.97438 * 24 23 22 26 26 C 1.33350 * 121.35190 * 359.75199 * 25 24 23 27 27 C 1.47432 * 125.64439 * 168.66281 * 9 7 2 28 28 H 0.96993 * 119.99395 * 174.92913 * 1 2 3 29 29 H 1.08998 * 109.88209 * 300.42975 * 10 9 7 30 30 H 1.08994 * 109.88779 * 61.60345 * 10 9 7 31 31 H 1.08997 * 110.72315 * 140.55470 * 11 10 9 32 32 H 1.08996 * 110.71513 * 263.82415 * 11 10 9 33 33 H 0.96999 * 119.99920 * 335.00726 * 14 12 11 34 34 H 1.07997 * 119.64138 * 359.97438 * 18 17 15 35 35 H 1.07997 * 119.46792 * 180.02562 * 19 18 17 36 36 H 1.08001 * 119.95190 * 179.97438 * 20 19 18 37 37 H 1.08006 * 120.91897 * 0.02562 * 22 21 20 38 38 H 1.08000 * 120.04330 * 180.02562 * 23 22 21 39 39 H 1.08008 * 119.15063 * 180.02562 * 24 23 22 40 40 H 1.08999 * 110.36614 * 274.75277 * 27 9 7 41 41 H 1.08996 * 110.36422 * 37.07536 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2902 2.7436 0.1291 5 1 3.1983 1.6421 1.1427 6 1 3.0044 1.7540 -1.2720 7 6 2.0104 -1.2021 -0.0005 8 1 1.4958 -2.1229 0.2315 9 7 3.3475 -1.2205 -0.2954 10 6 4.1190 -0.0968 -0.8463 11 6 5.5699 -0.5869 -1.0368 12 6 5.4089 -2.1282 -1.1133 13 1 6.3190 -2.6326 -0.7889 14 7 5.0309 -2.5502 -2.4642 15 6 5.3208 -3.7968 -2.8866 16 8 5.8958 -4.5713 -2.1463 17 6 4.9408 -4.2214 -4.2465 18 6 4.2850 -3.3431 -5.0972 19 6 3.9239 -3.7343 -6.3797 20 6 4.2021 -4.9883 -6.8373 21 6 4.8645 -5.9090 -6.0092 22 6 5.1637 -7.2104 -6.4559 23 6 5.8105 -8.0539 -5.5975 24 6 6.1545 -7.6160 -4.3214 25 7 5.8743 -6.4018 -3.9102 26 6 5.2495 -5.5284 -4.7009 27 6 4.2532 -2.3684 -0.1067 28 1 -0.4849 -0.8367 -0.0742 29 1 3.7006 0.2046 -1.8066 30 1 4.0994 0.7425 -0.1512 31 1 5.9904 -0.1966 -1.9636 32 1 6.1870 -0.3054 -0.1835 33 1 4.5720 -1.9325 -3.0548 34 1 4.0529 -2.3443 -4.7582 35 1 3.4144 -3.0341 -7.0251 36 1 3.9127 -5.2738 -7.8379 37 1 4.8903 -7.5325 -7.4499 38 1 6.0553 -9.0587 -5.9087 39 1 6.6660 -8.2929 -3.6530 40 1 4.6340 -2.3873 0.9144 41 1 3.7374 -3.3004 -0.3375 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015130444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:04 Heat of formation + Delta-G solvation = 41.214522 kcal Electronic energy + Delta-G solvation = -25137.918674 eV Core-core repulsion = 21597.013336 eV Total energy + Delta-G solvation = -3540.905338 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.99897 -40.72398 -39.05525 -37.91772 -35.53667 -34.47972 -33.97602 -31.72367 -31.47153 -30.83082 -29.57613 -26.10439 -25.51751 -24.48540 -24.32942 -22.65223 -21.90596 -21.24621 -19.66740 -19.27034 -18.81035 -17.87518 -17.42812 -17.13456 -16.88988 -16.09170 -15.93014 -15.69915 -15.49326 -15.15918 -15.06198 -14.85420 -14.79608 -14.16198 -14.01630 -13.86607 -13.50360 -13.11296 -13.09184 -12.86025 -12.75655 -12.53996 -12.41157 -12.28313 -11.83178 -11.50254 -11.44981 -11.12932 -11.05339 -10.67936 -10.17076 -10.11840 -9.82436 -9.30789 -9.06939 -8.67413 -5.49405 -0.85015 -0.18580 0.74623 1.41064 1.53433 1.75335 1.76020 2.09932 2.23932 2.56563 3.11511 3.14751 3.27612 3.32213 3.50908 3.63347 3.74383 3.83318 3.85613 3.95230 4.04479 4.13149 4.16772 4.39341 4.41413 4.47881 4.54631 4.63645 4.71752 4.82545 4.87266 4.90177 4.94198 4.97034 5.09028 5.14673 5.19736 5.34051 5.48568 5.52693 5.58176 5.82585 6.07374 6.53851 6.81612 7.06150 7.26675 7.40297 8.07671 8.85153 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.020907 B = 0.003555 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.941073 B = 7874.085560 C = 8335.115513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.078 4.078 3 Si 1.115 2.885 4 H -0.315 1.315 5 H -0.286 1.286 6 H -0.238 1.238 7 C -0.312 4.312 8 H 0.032 0.968 9 N -0.627 5.627 10 C 0.096 3.904 11 C -0.118 4.118 12 C 0.142 3.858 13 H 0.106 0.894 14 N -0.703 5.703 15 C 0.549 3.451 16 O -0.549 6.549 17 C -0.153 4.153 18 C -0.051 4.051 19 C -0.133 4.133 20 C -0.054 4.054 21 C -0.132 4.132 22 C -0.049 4.049 23 C -0.175 4.175 24 C 0.118 3.882 25 N -0.500 5.500 26 C 0.132 3.868 27 C 0.122 3.878 28 H 0.244 0.756 29 H 0.047 0.953 30 H 0.030 0.970 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.406 0.594 34 H 0.146 0.854 35 H 0.170 0.830 36 H 0.178 0.822 37 H 0.184 0.816 38 H 0.177 0.823 39 H 0.173 0.827 40 H 0.037 0.963 41 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.180 -10.408 -20.720 27.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.270 4.270 3 Si 0.942 3.058 4 H -0.244 1.244 5 H -0.214 1.214 6 H -0.163 1.163 7 C -0.441 4.441 8 H 0.050 0.950 9 N -0.355 5.355 10 C -0.028 4.028 11 C -0.156 4.156 12 C 0.036 3.964 13 H 0.123 0.877 14 N -0.356 5.356 15 C 0.338 3.662 16 O -0.427 6.427 17 C -0.157 4.157 18 C -0.071 4.071 19 C -0.150 4.150 20 C -0.072 4.072 21 C -0.134 4.134 22 C -0.075 4.075 23 C -0.195 4.195 24 C -0.053 4.053 25 N -0.208 5.208 26 C 0.009 3.991 27 C -0.005 4.005 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.243 0.757 34 H 0.163 0.837 35 H 0.188 0.812 36 H 0.195 0.805 37 H 0.201 0.799 38 H 0.194 0.806 39 H 0.190 0.810 40 H 0.055 0.945 41 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 15.540 -8.983 -19.242 26.315 hybrid contribution -1.064 -2.079 -0.027 2.335 sum 14.475 -11.062 -19.269 26.518 Atomic orbital electron populations 1.71007 1.07095 1.28268 1.54435 1.27307 0.96417 1.04623 0.98697 0.83358 0.72364 0.71228 0.78875 1.24442 1.21383 1.16272 1.19995 0.84101 0.94433 1.45566 0.94980 1.44842 1.04775 1.10817 1.75110 1.22246 0.92797 0.90920 0.96811 1.22926 0.95061 0.92231 1.05373 1.21993 0.96571 0.96229 0.81639 0.87659 1.45723 1.60277 1.13883 1.15676 1.18396 0.78926 0.81698 0.87226 1.90775 1.42247 1.52711 1.56941 1.19942 1.06200 0.94833 0.94704 1.21795 0.92272 0.99062 0.93969 1.21270 1.00667 0.97947 0.95148 1.21692 0.93180 0.92048 1.00285 1.19204 1.02276 0.97597 0.94305 1.21995 0.93626 0.90444 1.01420 1.22312 0.99951 1.03037 0.94172 1.23667 0.94159 0.91830 0.95677 1.68245 1.12422 1.04093 1.35991 1.18922 0.95933 0.93001 0.91212 1.22126 0.91337 0.89985 0.97047 0.94678 0.93552 0.95259 0.86858 0.87506 0.75739 0.83672 0.81228 0.80456 0.79885 0.80595 0.81020 0.94538 0.96688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.23 13.70 21.65 0.30 -62.93 16 2 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 3 Si 1.11 53.05 24.53 68.60 1.68 54.73 16 4 H -0.31 -15.55 7.11 99.48 0.71 -14.84 16 5 H -0.29 -12.95 6.84 99.48 0.68 -12.27 16 6 H -0.24 -9.46 5.43 99.48 0.54 -8.92 16 7 C -0.31 -18.83 10.56 84.03 0.89 -17.94 16 8 H 0.03 2.16 8.06 -2.91 -0.02 2.13 16 9 N -0.63 -30.98 3.32 -691.54 -2.30 -33.28 16 10 C 0.10 3.78 4.60 86.73 0.40 4.18 16 11 C -0.12 -3.35 6.55 31.78 0.21 -3.15 16 12 C 0.14 4.81 3.43 46.46 0.16 4.97 16 13 H 0.11 3.49 7.54 -2.39 -0.02 3.47 16 14 N -0.70 -23.15 5.15 -438.86 -2.26 -25.41 16 15 C 0.55 20.25 7.76 86.67 0.67 20.92 16 16 O -0.55 -24.17 14.83 -4.01 -0.06 -24.23 16 17 C -0.15 -4.77 5.91 -19.86 -0.12 -4.89 16 18 C -0.05 -1.15 9.52 22.54 0.21 -0.94 16 19 C -0.13 -2.11 9.93 21.98 0.22 -1.89 16 20 C -0.05 -0.77 9.75 22.37 0.22 -0.56 16 21 C -0.13 -2.74 5.74 -21.29 -0.12 -2.86 16 22 C -0.05 -0.68 9.90 22.52 0.22 -0.46 16 23 C -0.18 -2.56 10.03 22.13 0.22 -2.33 16 24 C 0.12 2.71 11.15 85.02 0.95 3.66 16 25 N -0.50 -16.56 8.44 -187.96 -1.59 -18.15 16 26 C 0.13 4.03 6.61 40.61 0.27 4.30 16 27 C 0.12 5.33 6.95 86.93 0.60 5.93 16 28 H 0.24 16.27 8.73 -92.71 -0.81 15.46 16 29 H 0.05 1.81 6.78 -2.39 -0.02 1.80 16 30 H 0.03 1.21 3.83 -2.39 -0.01 1.20 16 31 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.41 11.69 6.69 -92.71 -0.62 11.07 16 34 H 0.15 2.85 6.37 -2.91 -0.02 2.83 16 35 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 36 H 0.18 0.95 8.06 -2.91 -0.02 0.92 16 37 H 0.18 0.84 8.06 -2.91 -0.02 0.81 16 38 H 0.18 1.08 8.06 -2.91 -0.02 1.05 16 39 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 40 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -89.58 334.06 1.47 -88.12 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.22 Total: 16.50 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 5.47 Total: 4.65 kcal Atomic # 7 Polarization: -133.92 SS G_CDS: -5.84 Total: -139.77 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.06 Total: -24.23 kcal Atomic # 14 Polarization: 53.05 SS G_CDS: 1.68 Total: 54.73 kcal Total: -89.58 1.47 -88.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015130444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.334 kcal (2) G-P(sol) polarization free energy of solvation -89.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds