Wall clock time and date at job start Fri Apr 10 2020 22:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48499 * 109.46751 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47267 * 299.99704 * 3 2 1 6 6 H 1.48502 * 109.47169 * 59.99822 * 3 2 1 7 7 C 1.38810 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99942 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99805 * 0.02562 * 7 2 1 10 10 C 1.47020 * 125.64912 * 359.97438 * 9 7 2 11 11 C 1.54326 * 107.26983 * 178.98594 * 10 9 7 12 12 C 1.55157 * 102.94023 * 337.80665 * 11 10 9 13 13 H 1.09007 * 111.00023 * 153.61470 * 12 11 10 14 14 N 1.46496 * 111.00372 * 277.42364 * 12 11 10 15 15 C 1.34777 * 120.00101 * 204.99701 * 14 12 11 16 16 O 1.21539 * 119.99863 * 0.02562 * 15 14 12 17 17 C 1.47902 * 120.00052 * 180.02562 * 15 14 12 18 18 C 1.38890 * 121.11334 * 354.13958 * 17 15 14 19 19 C 1.39270 * 119.57708 * 180.23870 * 18 17 15 20 20 N 1.30993 * 121.88853 * 359.50926 * 19 18 17 21 21 C 1.33540 * 121.82760 * 0.25807 * 20 19 18 22 22 C 1.40709 * 120.97970 * 179.97438 * 21 20 19 23 23 C 1.36060 * 119.74577 * 180.02562 * 22 21 20 24 24 C 1.39353 * 121.05388 * 359.97438 * 23 22 21 25 25 C 1.36251 * 120.83689 * 359.97438 * 24 23 22 26 26 C 1.40100 * 119.64257 * 0.02562 * 25 24 23 27 27 C 1.47428 * 125.64505 * 180.02562 * 9 7 2 28 28 H 0.96998 * 120.00262 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.88448 * 59.57088 * 10 9 7 30 30 H 1.08999 * 109.88521 * 298.40029 * 10 9 7 31 31 H 1.08998 * 110.72184 * 219.44689 * 11 10 9 32 32 H 1.09001 * 110.72032 * 96.17310 * 11 10 9 33 33 H 0.96999 * 120.00202 * 25.01206 * 14 12 11 34 34 H 1.07998 * 120.21350 * 0.02562 * 18 17 15 35 35 H 1.07997 * 119.05720 * 179.78344 * 19 18 17 36 36 H 1.08002 * 120.12754 * 0.02562 * 22 21 20 37 37 H 1.07996 * 119.47374 * 179.97438 * 23 22 21 38 38 H 1.07998 * 119.58509 * 179.97438 * 24 23 22 39 39 H 1.07999 * 120.17937 * 180.02562 * 25 24 23 40 40 H 1.08994 * 110.36787 * 85.24241 * 27 9 7 41 41 H 1.08996 * 110.36755 * 322.91842 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1374 -2.5327 0.0005 11 6 -0.4484 -4.0441 -0.0255 12 6 0.8521 -4.6563 -0.6099 13 1 0.9836 -5.6857 -0.2761 14 7 0.8588 -4.5767 -2.0727 15 6 1.5908 -5.4505 -2.7918 16 8 2.2450 -6.3048 -2.2267 17 6 1.5980 -5.3697 -4.2686 18 6 0.7681 -4.4833 -4.9429 19 6 0.7975 -4.4374 -6.3346 20 7 1.5963 -5.2033 -7.0355 21 6 2.4244 -6.0754 -6.4550 22 6 3.2746 -6.8899 -7.2255 23 6 4.1080 -7.7703 -6.6078 24 6 4.1358 -7.8806 -5.2190 25 6 3.3276 -7.1076 -4.4407 26 6 2.4568 -6.1902 -5.0430 27 6 1.9336 -3.7311 0.0016 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5575 -2.0526 -0.8833 30 1 -0.5544 -2.0841 0.9022 31 1 -1.2983 -4.2519 -0.6756 32 1 -0.6317 -4.4176 0.9820 33 1 0.3366 -3.8950 -2.5237 34 1 0.1018 -3.8363 -4.3918 35 1 0.1461 -3.7476 -6.8505 36 1 3.2657 -6.8165 -8.3030 37 1 4.7585 -8.3936 -7.2035 38 1 4.8064 -8.5877 -4.7535 39 1 3.3581 -7.2016 -3.3652 40 1 2.1664 -4.0413 1.0202 41 1 2.8331 -3.7408 -0.6138 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015155820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:08 Heat of formation + Delta-G solvation = 56.187827 kcal Electronic energy + Delta-G solvation = -25090.752044 eV Core-core repulsion = 21550.495998 eV Total energy + Delta-G solvation = -3540.256046 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.16357 -39.42780 -37.34499 -37.18795 -33.99685 -33.46812 -31.91799 -30.64307 -30.09196 -29.19675 -27.40758 -25.24718 -24.39942 -23.66678 -22.85747 -20.95244 -20.16180 -20.01754 -18.31560 -17.68661 -17.40432 -16.82968 -16.04956 -15.48045 -15.10413 -14.82006 -14.78587 -14.59758 -14.18866 -13.99206 -13.82505 -13.64975 -13.21501 -13.04443 -12.53556 -12.01201 -11.90493 -11.90023 -11.74490 -11.46838 -11.02923 -10.95630 -10.83423 -10.55196 -10.47415 -10.21266 -10.16471 -10.02314 -9.74777 -9.27793 -8.92479 -8.91682 -8.63083 -8.34327 -6.89158 -5.78243 -3.11111 0.00670 0.67535 1.64241 2.70743 3.09531 3.22553 3.35865 3.42606 3.44277 4.03922 4.12012 4.44947 4.48779 4.55804 4.62311 4.73125 4.98449 5.07853 5.20381 5.21805 5.35528 5.41402 5.42354 5.53089 5.67126 5.67963 5.74304 5.90609 5.95683 6.11403 6.19517 6.26739 6.35415 6.38022 6.41864 6.50462 6.60275 6.74938 6.91805 7.45931 7.48401 7.64403 7.71990 7.73872 8.17920 8.27402 9.15864 9.75506 10.40445 11.33667 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.016901 B = 0.003580 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.312011 B = 7820.009524 C = 8320.968755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.175 3.825 11 C -0.154 4.154 12 C 0.126 3.874 13 H 0.094 0.906 14 N -0.690 5.690 15 C 0.559 3.441 16 O -0.536 6.536 17 C -0.065 4.065 18 C -0.137 4.137 19 C 0.128 3.872 20 N -0.462 5.462 21 C 0.122 3.878 22 C -0.101 4.101 23 C -0.099 4.099 24 C -0.123 4.123 25 C -0.097 4.097 26 C -0.066 4.066 27 C 0.125 3.875 28 H 0.251 0.749 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.404 0.596 34 H 0.145 0.855 35 H 0.167 0.833 36 H 0.135 0.865 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.170 0.830 40 H 0.030 0.970 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.056 -13.842 -11.307 17.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.050 3.950 11 C -0.193 4.193 12 C 0.021 3.979 13 H 0.112 0.888 14 N -0.339 5.339 15 C 0.345 3.655 16 O -0.415 6.415 17 C -0.076 4.076 18 C -0.158 4.158 19 C -0.044 4.044 20 N -0.171 5.171 21 C 0.001 3.999 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.141 4.141 25 C -0.115 4.115 26 C -0.069 4.069 27 C -0.002 4.002 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.240 0.760 34 H 0.163 0.837 35 H 0.184 0.816 36 H 0.153 0.847 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.187 0.813 40 H 0.048 0.952 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.538 -14.219 -11.782 18.530 hybrid contribution 0.113 1.419 0.668 1.573 sum 1.651 -12.800 -11.115 17.032 Atomic orbital electron populations 1.69953 1.04811 1.24936 1.57382 1.24770 0.95730 0.97597 1.02268 0.86058 0.78789 0.83764 0.77256 1.20547 1.21754 1.21728 1.19102 0.90482 0.82338 1.43472 0.90478 1.44494 1.01456 0.99880 1.87279 1.21193 0.84584 0.87874 1.01372 1.23245 0.95526 1.00074 1.00422 1.22248 0.97808 0.99806 0.78059 0.88799 1.45781 1.47453 1.32977 1.07700 1.17987 0.79834 0.81733 0.85897 1.90556 1.42615 1.36514 1.71796 1.20437 0.96779 0.96577 0.93832 1.22515 0.99010 0.97887 0.96346 1.22918 0.95154 0.95643 0.90680 1.67800 1.04454 1.04473 1.40372 1.18892 0.95842 0.95445 0.89751 1.20753 0.95579 0.95587 1.00030 1.20973 0.98088 0.97816 0.95013 1.21093 0.99505 0.99899 0.93602 1.22107 0.92928 0.92881 1.03571 1.18686 0.97374 0.97485 0.93326 1.21944 0.94682 0.86360 0.97217 0.93813 0.93573 0.93617 0.91501 0.90700 0.75997 0.83701 0.81637 0.84741 0.85391 0.85447 0.81294 0.95203 0.93902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.95 10.31 55.49 0.57 -25.38 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.23 -6.13 10.28 -15.06 -0.15 -6.28 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -14.66 3.39 -170.08 -0.58 -15.24 16 10 C 0.17 3.89 5.36 -3.06 -0.02 3.87 16 11 C -0.15 -2.56 6.55 -24.90 -0.16 -2.73 16 12 C 0.13 2.12 3.43 -65.79 -0.23 1.90 16 13 H 0.09 1.51 7.54 -51.93 -0.39 1.12 16 14 N -0.69 -10.81 5.14 -52.65 -0.27 -11.08 16 15 C 0.56 8.93 7.75 -12.30 -0.10 8.84 16 16 O -0.54 -9.52 13.17 5.33 0.07 -9.45 16 17 C -0.06 -0.94 5.94 -104.34 -0.62 -1.56 16 18 C -0.14 -1.65 9.60 -38.96 -0.37 -2.02 16 19 C 0.13 1.46 11.14 -17.53 -0.20 1.27 16 20 N -0.46 -6.19 10.30 -11.01 -0.11 -6.31 16 21 C 0.12 1.69 6.61 -84.87 -0.56 1.13 16 22 C -0.10 -1.15 9.98 -39.43 -0.39 -1.54 16 23 C -0.10 -0.98 9.94 -39.95 -0.40 -1.38 16 24 C -0.12 -1.35 9.96 -39.88 -0.40 -1.75 16 25 C -0.10 -1.33 9.25 -39.60 -0.37 -1.70 16 26 C -0.07 -0.96 5.76 -106.52 -0.61 -1.58 16 27 C 0.13 2.56 6.93 -2.53 -0.02 2.54 16 28 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.05 1.11 7.38 -51.93 -0.38 0.73 16 30 H 0.05 1.15 7.50 -51.93 -0.39 0.76 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.40 5.93 6.84 -40.82 -0.28 5.65 16 34 H 0.15 1.45 6.55 -52.49 -0.34 1.10 16 35 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 36 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 37 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.17 2.54 4.99 -52.49 -0.26 2.28 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 338.89 15.07 5.11 5.11 Total: -1.00 -31.67 338.89 -9.90 -41.56 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -4.98 Total: 5.37 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -4.69 Total: -1.29 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -0.39 Total: -58.01 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.07 Total: -9.45 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.67 -9.90 -41.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015155820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.752 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds