Wall clock time and date at job start Fri Apr 10 2020 22:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48499 * 109.46751 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47267 * 299.99704 * 3 2 1 6 6 H 1.48502 * 109.47169 * 59.99822 * 3 2 1 7 7 C 1.38810 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99942 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99805 * 0.02562 * 7 2 1 10 10 C 1.47020 * 125.64912 * 359.97438 * 9 7 2 11 11 C 1.54326 * 107.26983 * 178.98594 * 10 9 7 12 12 C 1.55157 * 102.94023 * 337.80665 * 11 10 9 13 13 H 1.09007 * 111.00023 * 153.61470 * 12 11 10 14 14 N 1.46496 * 111.00372 * 277.42364 * 12 11 10 15 15 C 1.34777 * 120.00101 * 204.99701 * 14 12 11 16 16 O 1.21539 * 119.99863 * 0.02562 * 15 14 12 17 17 C 1.47902 * 120.00052 * 180.02562 * 15 14 12 18 18 C 1.38890 * 121.11334 * 354.13958 * 17 15 14 19 19 C 1.39270 * 119.57708 * 180.23870 * 18 17 15 20 20 N 1.30993 * 121.88853 * 359.50926 * 19 18 17 21 21 C 1.33540 * 121.82760 * 0.25807 * 20 19 18 22 22 C 1.40709 * 120.97970 * 179.97438 * 21 20 19 23 23 C 1.36060 * 119.74577 * 180.02562 * 22 21 20 24 24 C 1.39353 * 121.05388 * 359.97438 * 23 22 21 25 25 C 1.36251 * 120.83689 * 359.97438 * 24 23 22 26 26 C 1.40100 * 119.64257 * 0.02562 * 25 24 23 27 27 C 1.47428 * 125.64505 * 180.02562 * 9 7 2 28 28 H 0.96998 * 120.00262 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.88448 * 59.57088 * 10 9 7 30 30 H 1.08999 * 109.88521 * 298.40029 * 10 9 7 31 31 H 1.08998 * 110.72184 * 219.44689 * 11 10 9 32 32 H 1.09001 * 110.72032 * 96.17310 * 11 10 9 33 33 H 0.96999 * 120.00202 * 25.01206 * 14 12 11 34 34 H 1.07998 * 120.21350 * 0.02562 * 18 17 15 35 35 H 1.07997 * 119.05720 * 179.78344 * 19 18 17 36 36 H 1.08002 * 120.12754 * 0.02562 * 22 21 20 37 37 H 1.07996 * 119.47374 * 179.97438 * 23 22 21 38 38 H 1.07998 * 119.58509 * 179.97438 * 24 23 22 39 39 H 1.07999 * 120.17937 * 180.02562 * 25 24 23 40 40 H 1.08994 * 110.36787 * 85.24241 * 27 9 7 41 41 H 1.08996 * 110.36755 * 322.91842 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1374 -2.5327 0.0005 11 6 -0.4484 -4.0441 -0.0255 12 6 0.8521 -4.6563 -0.6099 13 1 0.9836 -5.6857 -0.2761 14 7 0.8588 -4.5767 -2.0727 15 6 1.5908 -5.4505 -2.7918 16 8 2.2450 -6.3048 -2.2267 17 6 1.5980 -5.3697 -4.2686 18 6 0.7681 -4.4833 -4.9429 19 6 0.7975 -4.4374 -6.3346 20 7 1.5963 -5.2033 -7.0355 21 6 2.4244 -6.0754 -6.4550 22 6 3.2746 -6.8899 -7.2255 23 6 4.1080 -7.7703 -6.6078 24 6 4.1358 -7.8806 -5.2190 25 6 3.3276 -7.1076 -4.4407 26 6 2.4568 -6.1902 -5.0430 27 6 1.9336 -3.7311 0.0016 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5575 -2.0526 -0.8833 30 1 -0.5544 -2.0841 0.9022 31 1 -1.2983 -4.2519 -0.6756 32 1 -0.6317 -4.4176 0.9820 33 1 0.3366 -3.8950 -2.5237 34 1 0.1018 -3.8363 -4.3918 35 1 0.1461 -3.7476 -6.8505 36 1 3.2657 -6.8165 -8.3030 37 1 4.7585 -8.3936 -7.2035 38 1 4.8064 -8.5877 -4.7535 39 1 3.3581 -7.2016 -3.3652 40 1 2.1664 -4.0413 1.0202 41 1 2.8331 -3.7408 -0.6138 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015155820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:07 Heat of formation + Delta-G solvation = 36.504594 kcal Electronic energy + Delta-G solvation = -25091.605573 eV Core-core repulsion = 21550.495998 eV Total energy + Delta-G solvation = -3541.109575 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.16933 -40.67559 -38.88703 -38.08659 -35.54133 -34.58574 -33.59352 -31.55985 -31.27674 -30.73209 -29.01336 -26.69913 -25.90812 -24.58218 -23.89277 -22.23899 -21.82804 -21.44773 -19.35185 -18.92323 -18.57856 -18.30370 -17.36164 -16.66975 -16.54589 -16.31560 -15.90536 -15.67504 -15.64986 -15.19002 -15.12850 -14.84307 -14.30359 -14.09606 -14.04380 -13.83248 -13.57996 -12.91222 -12.84014 -12.79265 -12.62909 -12.35610 -12.31432 -12.08080 -12.00313 -11.83222 -11.62431 -11.55913 -11.38120 -10.73505 -10.36272 -10.20690 -9.81911 -9.29473 -8.86855 -7.86092 -5.19979 -0.97081 -0.23607 0.66531 1.45039 1.46294 1.55648 1.70233 1.94750 2.10659 2.48279 3.08264 3.26759 3.32932 3.41805 3.60889 3.66312 3.68228 3.79673 3.86309 4.04943 4.16654 4.22115 4.30218 4.40774 4.53485 4.56887 4.67326 4.70895 4.76051 4.86903 4.93721 5.03323 5.05775 5.14770 5.34365 5.43469 5.44419 5.49975 5.58750 5.67641 5.77033 5.88785 6.19597 6.40511 6.77637 7.03887 7.11725 7.76522 8.40084 9.23756 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.016901 B = 0.003580 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.312011 B = 7820.009524 C = 8320.968755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.056 4.056 3 Si 0.971 3.029 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.621 5.621 10 C 0.182 3.818 11 C -0.133 4.133 12 C 0.140 3.860 13 H 0.109 0.891 14 N -0.688 5.688 15 C 0.560 3.440 16 O -0.558 6.558 17 C -0.092 4.092 18 C -0.126 4.126 19 C 0.125 3.875 20 N -0.473 5.473 21 C 0.100 3.900 22 C -0.107 4.107 23 C -0.092 4.092 24 C -0.112 4.112 25 C -0.128 4.128 26 C -0.085 4.085 27 C 0.122 3.878 28 H 0.248 0.752 29 H 0.023 0.977 30 H 0.010 0.990 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.409 0.591 34 H 0.164 0.836 35 H 0.202 0.798 36 H 0.154 0.846 37 H 0.167 0.833 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.035 0.965 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.284 -14.846 -12.890 19.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.249 4.249 3 Si 0.800 3.200 4 H -0.199 1.199 5 H -0.216 1.216 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.348 5.348 10 C 0.057 3.943 11 C -0.172 4.172 12 C 0.035 3.965 13 H 0.127 0.873 14 N -0.338 5.338 15 C 0.348 3.652 16 O -0.438 6.438 17 C -0.103 4.103 18 C -0.147 4.147 19 C -0.047 4.047 20 N -0.182 5.182 21 C -0.021 4.021 22 C -0.125 4.125 23 C -0.111 4.111 24 C -0.130 4.130 25 C -0.147 4.147 26 C -0.088 4.088 27 C -0.004 4.004 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.028 0.972 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.246 0.754 34 H 0.181 0.819 35 H 0.219 0.781 36 H 0.171 0.829 37 H 0.185 0.815 38 H 0.171 0.829 39 H 0.168 0.832 40 H 0.053 0.947 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.775 -15.250 -13.373 20.361 hybrid contribution 0.109 1.688 1.125 2.031 sum 1.884 -13.562 -12.248 18.371 Atomic orbital electron populations 1.70136 1.05813 1.25172 1.58116 1.25472 0.96588 1.00346 1.02538 0.85123 0.77966 0.80045 0.76858 1.19858 1.21624 1.21891 1.19355 0.90644 0.83881 1.43169 0.91061 1.44714 1.02529 1.00467 1.87083 1.20990 0.83299 0.91455 0.98516 1.23102 0.96283 0.95515 1.02284 1.22062 0.96257 0.99522 0.78702 0.87283 1.45729 1.47676 1.33216 1.07181 1.18255 0.79093 0.81156 0.86699 1.90550 1.43397 1.37385 1.72494 1.20404 0.98606 0.98417 0.92858 1.22783 0.98130 0.96903 0.96889 1.23503 0.95020 0.95603 0.90544 1.67861 1.04799 1.04775 1.40755 1.19250 0.96826 0.96385 0.89688 1.21100 0.95169 0.95264 1.00966 1.21373 0.97700 0.97356 0.94676 1.21451 0.98353 0.98899 0.94263 1.22032 0.94862 0.94722 1.03050 1.18883 0.97881 0.97994 0.94001 1.22064 0.95223 0.85648 0.97497 0.94288 0.95870 0.97184 0.88583 0.88883 0.75439 0.81871 0.78137 0.82883 0.81530 0.82938 0.83188 0.94742 0.95491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.02 10.31 21.65 0.22 -53.80 16 2 C -0.06 -3.09 5.49 84.86 0.47 -2.62 16 3 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.24 -13.33 10.28 84.03 0.86 -12.47 16 8 H 0.07 3.91 7.83 -2.92 -0.02 3.88 16 9 N -0.62 -30.60 3.39 -692.01 -2.35 -32.95 16 10 C 0.18 8.19 5.36 86.73 0.47 8.65 16 11 C -0.13 -4.23 6.55 31.78 0.21 -4.02 16 12 C 0.14 4.59 3.43 46.38 0.16 4.75 16 13 H 0.11 3.33 7.54 -2.38 -0.02 3.32 16 14 N -0.69 -21.18 5.14 -438.78 -2.26 -23.44 16 15 C 0.56 17.98 7.75 86.80 0.67 18.65 16 16 O -0.56 -20.17 13.17 -3.84 -0.05 -20.22 16 17 C -0.09 -2.65 5.94 -19.68 -0.12 -2.77 16 18 C -0.13 -2.92 9.60 22.67 0.22 -2.70 16 19 C 0.13 2.66 11.14 85.07 0.95 3.60 16 20 N -0.47 -12.06 10.30 -188.73 -1.94 -14.00 16 21 C 0.10 2.66 6.61 40.34 0.27 2.93 16 22 C -0.11 -2.22 9.98 22.37 0.22 -1.99 16 23 C -0.09 -1.56 9.94 22.03 0.22 -1.34 16 24 C -0.11 -2.28 9.96 22.08 0.22 -2.06 16 25 C -0.13 -3.56 9.25 22.26 0.21 -3.35 16 26 C -0.08 -2.48 5.76 -21.09 -0.12 -2.60 16 27 C 0.12 5.02 6.93 86.85 0.60 5.62 16 28 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 29 H 0.02 1.13 7.38 -2.38 -0.02 1.12 16 30 H 0.01 0.51 7.50 -2.39 -0.02 0.49 16 31 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.41 11.68 6.84 -92.71 -0.63 11.05 16 34 H 0.16 3.02 6.55 -2.91 -0.02 3.00 16 35 H 0.20 2.64 8.06 -2.91 -0.02 2.62 16 36 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 37 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.15 4.70 4.99 -2.91 -0.01 4.68 16 40 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -70.51 338.89 1.58 -68.93 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.43 Total: 20.07 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 5.50 Total: 8.26 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -6.33 Total: -124.18 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.05 Total: -20.22 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -70.51 1.58 -68.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015155820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.435 kcal (2) G-P(sol) polarization free energy of solvation -70.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds