Wall clock time and date at job start Fri Apr 10 2020 22:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00054 * 2 1 4 4 H 1.48498 * 109.47286 * 265.00581 * 3 2 1 5 5 H 1.48504 * 109.46845 * 25.00327 * 3 2 1 6 6 H 1.48494 * 109.47174 * 145.00384 * 3 2 1 7 7 C 1.38807 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00210 * 185.24760 * 7 2 1 9 9 N 1.36938 * 119.99997 * 5.23364 * 7 2 1 10 10 C 1.47013 * 125.65010 * 5.18996 * 9 7 2 11 11 C 1.54321 * 107.27368 * 178.91481 * 10 9 7 12 12 C 1.55153 * 102.94292 * 337.80660 * 11 10 9 13 13 H 1.09005 * 111.00298 * 277.38938 * 12 11 10 14 14 N 1.46496 * 111.00540 * 153.57662 * 12 11 10 15 15 C 1.34783 * 119.99923 * 155.00340 * 14 12 11 16 16 O 1.21540 * 120.00007 * 359.97438 * 15 14 12 17 17 C 1.47908 * 119.99815 * 179.97438 * 15 14 12 18 18 C 1.38894 * 121.11417 * 354.09603 * 17 15 14 19 19 C 1.39263 * 119.57586 * 179.97438 * 18 17 15 20 20 N 1.31001 * 121.88820 * 359.97438 * 19 18 17 21 21 C 1.33532 * 121.82727 * 0.02562 * 20 19 18 22 22 C 1.40714 * 120.98132 * 180.02562 * 21 20 19 23 23 C 1.36059 * 119.74190 * 180.02562 * 22 21 20 24 24 C 1.39356 * 121.05638 * 359.67668 * 23 22 21 25 25 C 1.36243 * 120.83528 * 0.63520 * 24 23 22 26 26 C 1.40098 * 119.64131 * 359.39329 * 25 24 23 27 27 C 1.47432 * 125.64644 * 185.15619 * 9 7 2 28 28 H 0.96997 * 120.00035 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.88403 * 59.49590 * 10 9 7 30 30 H 1.09005 * 109.88190 * 298.33036 * 10 9 7 31 31 H 1.08998 * 110.72207 * 219.43985 * 11 10 9 32 32 H 1.09003 * 110.87428 * 96.23874 * 11 10 9 33 33 H 0.97002 * 120.00235 * 334.99809 * 14 12 11 34 34 H 1.07997 * 120.21188 * 359.95807 * 18 17 15 35 35 H 1.07996 * 119.06002 * 180.02562 * 19 18 17 36 36 H 1.07999 * 120.13359 * 0.02562 * 22 21 20 37 37 H 1.08000 * 119.47328 * 179.97438 * 23 22 21 38 38 H 1.08001 * 119.58144 * 180.31024 * 24 23 22 39 39 H 1.08000 * 120.17721 * 179.67831 * 25 24 23 40 40 H 1.08998 * 110.36372 * 85.31891 * 27 9 7 41 41 H 1.08999 * 110.37033 * 322.99378 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6033 1.9855 -1.3947 5 1 1.3988 2.6808 0.5918 6 1 3.4910 1.4730 0.8029 7 6 2.0103 -1.2021 -0.0005 8 1 3.0869 -1.2041 0.0850 9 7 1.3299 -2.3855 -0.1092 10 6 -0.1155 -2.5249 -0.3389 11 6 -0.4235 -4.0350 -0.4169 12 6 0.9503 -4.6510 -0.7916 13 1 1.1257 -4.5904 -1.8657 14 7 1.0502 -6.0356 -0.3234 15 6 1.8843 -6.8967 -0.9394 16 8 2.5531 -6.5247 -1.8836 17 6 1.9856 -8.2944 -0.4663 18 6 1.3262 -8.7130 0.6823 19 6 1.4434 -10.0368 1.0983 20 7 2.1615 -10.9095 0.4358 21 6 2.8225 -10.5784 -0.6762 22 6 3.5883 -11.5305 -1.3743 23 6 4.2520 -11.1655 -2.5045 24 6 4.1818 -9.8611 -2.9900 25 6 3.4554 -8.9112 -2.3372 26 6 2.7594 -9.2517 -1.1700 27 6 1.9257 -3.7308 -0.0161 28 1 -0.4850 0.8400 0.0004 29 1 -0.3902 -2.0416 -1.2765 30 1 -0.6671 -2.0763 0.4874 31 1 -1.1619 -4.2385 -1.1925 32 1 -0.7651 -4.4120 0.5471 33 1 0.5162 -6.3326 0.4300 34 1 0.7267 -8.0162 1.2492 35 1 0.9269 -10.3534 1.9924 36 1 3.6490 -12.5469 -1.0143 37 1 4.8388 -11.8996 -3.0366 38 1 4.7142 -9.5987 -3.8922 39 1 3.4125 -7.9022 -2.7201 40 1 1.9949 -4.0437 1.0257 41 1 2.9106 -3.7428 -0.4829 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015155826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:12 Heat of formation + Delta-G solvation = 57.027633 kcal Electronic energy + Delta-G solvation = -24604.539473 eV Core-core repulsion = 21064.319843 eV Total energy + Delta-G solvation = -3540.219630 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.29204 -39.49554 -37.36197 -37.29210 -34.29178 -33.60404 -31.97595 -30.77249 -30.22182 -29.17998 -27.31983 -25.34433 -24.34765 -23.78832 -22.87067 -20.99087 -20.46910 -20.06378 -18.41122 -17.79966 -17.53403 -16.85473 -16.16474 -15.57430 -15.18239 -14.95296 -14.87152 -14.54976 -14.34972 -14.11300 -14.05599 -13.51046 -13.35566 -12.86936 -12.48912 -12.31667 -12.01810 -11.87799 -11.84097 -11.58628 -11.09034 -10.99059 -10.80641 -10.68486 -10.54818 -10.29577 -10.13401 -9.95856 -9.74940 -9.39729 -9.04884 -8.95010 -8.64660 -8.45897 -6.88197 -5.74834 -3.10006 -0.12505 0.54547 1.52874 2.58525 3.00238 3.01988 3.39637 3.44680 3.46011 3.91580 3.98589 4.31569 4.38721 4.47693 4.51577 4.61546 4.85974 4.97244 5.10030 5.17456 5.28899 5.35260 5.40259 5.51038 5.56001 5.64167 5.71245 5.78840 5.87342 6.07666 6.09165 6.20811 6.29541 6.32149 6.34998 6.49692 6.60551 6.66815 6.85768 7.42841 7.46586 7.57441 7.58648 7.76284 8.13031 8.21737 9.17280 9.77425 10.41800 11.36258 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.026664 B = 0.002780 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.849538 B =10070.335032 C =10651.560179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.176 3.824 11 C -0.149 4.149 12 C 0.125 3.875 13 H 0.100 0.900 14 N -0.703 5.703 15 C 0.557 3.443 16 O -0.524 6.524 17 C -0.064 4.064 18 C -0.141 4.141 19 C 0.126 3.874 20 N -0.461 5.461 21 C 0.123 3.877 22 C -0.102 4.102 23 C -0.097 4.097 24 C -0.120 4.120 25 C -0.098 4.098 26 C -0.067 4.067 27 C 0.129 3.871 28 H 0.253 0.747 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.398 0.602 34 H 0.144 0.856 35 H 0.166 0.834 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.171 0.829 40 H 0.020 0.980 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.780 -22.620 -0.773 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.051 3.949 11 C -0.188 4.188 12 C 0.020 3.980 13 H 0.118 0.882 14 N -0.353 5.353 15 C 0.343 3.657 16 O -0.402 6.402 17 C -0.075 4.075 18 C -0.162 4.162 19 C -0.046 4.046 20 N -0.170 5.170 21 C 0.002 3.998 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.139 4.139 25 C -0.116 4.116 26 C -0.070 4.070 27 C 0.002 3.998 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.234 0.766 34 H 0.161 0.839 35 H 0.183 0.817 36 H 0.153 0.847 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.188 0.812 40 H 0.038 0.962 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.315 -22.969 -1.224 23.118 hybrid contribution 0.037 1.559 0.240 1.578 sum 2.352 -21.409 -0.984 21.561 Atomic orbital electron populations 1.69934 1.04913 1.25190 1.56940 1.24810 0.95732 0.97743 1.02097 0.86112 0.78559 0.83211 0.77731 1.21481 1.21660 1.20692 1.19055 0.90735 0.82351 1.43540 0.90386 1.44376 1.03772 0.99735 1.85040 1.21184 0.85220 0.87477 1.01004 1.23188 0.95029 0.99997 1.00537 1.22427 0.97542 0.77936 1.00058 0.88164 1.45946 1.42999 1.11605 1.34745 1.18045 0.80254 0.84381 0.83002 1.90606 1.43757 1.77875 1.27937 1.20459 0.97398 0.93976 0.95704 1.22459 0.99369 0.98155 0.96222 1.22902 0.94441 0.88864 0.98398 1.67799 1.06367 1.36705 1.06104 1.18888 0.96879 0.91465 0.92587 1.20763 0.96939 0.99041 0.95266 1.21005 0.98242 0.96679 0.95751 1.21126 0.99324 0.93016 1.00386 1.22127 0.93797 1.02626 0.93035 1.18697 0.98251 0.93211 0.96794 1.21814 0.95448 0.86223 0.96329 0.93674 0.94398 0.92150 0.91507 0.91862 0.76629 0.83855 0.81691 0.84673 0.85279 0.85306 0.81228 0.96215 0.93788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.72 10.41 55.49 0.58 -26.15 16 2 C -0.01 -0.21 5.46 -17.43 -0.10 -0.31 16 3 Si 0.91 22.07 29.56 -169.99 -5.02 17.05 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.38 10.27 -15.06 -0.15 -6.54 16 8 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 9 N -0.60 -15.25 3.39 -170.07 -0.58 -15.83 16 10 C 0.18 4.11 5.40 -3.07 -0.02 4.09 16 11 C -0.15 -2.53 6.60 -24.90 -0.16 -2.70 16 12 C 0.12 2.15 3.42 -65.79 -0.23 1.92 16 13 H 0.10 1.89 7.54 -51.93 -0.39 1.50 16 14 N -0.70 -9.48 5.15 -52.65 -0.27 -9.75 16 15 C 0.56 8.11 7.75 -12.30 -0.10 8.02 16 16 O -0.52 -9.19 13.17 5.33 0.07 -9.12 16 17 C -0.06 -0.80 5.94 -104.34 -0.62 -1.42 16 18 C -0.14 -1.33 9.59 -38.96 -0.37 -1.70 16 19 C 0.13 1.15 11.14 -17.52 -0.20 0.96 16 20 N -0.46 -5.36 10.30 -11.01 -0.11 -5.48 16 21 C 0.12 1.52 6.61 -84.87 -0.56 0.96 16 22 C -0.10 -1.03 9.99 -39.43 -0.39 -1.43 16 23 C -0.10 -0.87 9.94 -39.95 -0.40 -1.26 16 24 C -0.12 -1.23 9.96 -39.88 -0.40 -1.63 16 25 C -0.10 -1.26 9.25 -39.60 -0.37 -1.62 16 26 C -0.07 -0.88 5.76 -106.52 -0.61 -1.49 16 27 C 0.13 2.70 6.93 -2.53 -0.02 2.68 16 28 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.04 0.97 7.80 -51.93 -0.41 0.57 16 30 H 0.06 1.56 7.10 -51.93 -0.37 1.19 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.95 8.00 -51.93 -0.42 0.53 16 33 H 0.40 4.10 6.74 -40.82 -0.28 3.83 16 34 H 0.14 0.91 6.55 -52.49 -0.34 0.56 16 35 H 0.17 0.91 8.06 -52.49 -0.42 0.48 16 36 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.17 2.45 4.98 -52.49 -0.26 2.18 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 338.82 15.07 5.11 5.11 Total: -1.00 -33.07 338.82 -9.89 -42.96 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.97 Total: 2.68 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -4.69 Total: -1.47 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.38 Total: -57.20 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.07 Total: -9.12 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.07 -9.89 -42.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015155826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.988 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds