Wall clock time and date at job start Fri Apr 10 2020 22:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00054 * 2 1 4 4 H 1.48498 * 109.47286 * 265.00581 * 3 2 1 5 5 H 1.48504 * 109.46845 * 25.00327 * 3 2 1 6 6 H 1.48494 * 109.47174 * 145.00384 * 3 2 1 7 7 C 1.38807 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00210 * 185.24760 * 7 2 1 9 9 N 1.36938 * 119.99997 * 5.23364 * 7 2 1 10 10 C 1.47013 * 125.65010 * 5.18996 * 9 7 2 11 11 C 1.54321 * 107.27368 * 178.91481 * 10 9 7 12 12 C 1.55153 * 102.94292 * 337.80660 * 11 10 9 13 13 H 1.09005 * 111.00298 * 277.38938 * 12 11 10 14 14 N 1.46496 * 111.00540 * 153.57662 * 12 11 10 15 15 C 1.34783 * 119.99923 * 155.00340 * 14 12 11 16 16 O 1.21540 * 120.00007 * 359.97438 * 15 14 12 17 17 C 1.47908 * 119.99815 * 179.97438 * 15 14 12 18 18 C 1.38894 * 121.11417 * 354.09603 * 17 15 14 19 19 C 1.39263 * 119.57586 * 179.97438 * 18 17 15 20 20 N 1.31001 * 121.88820 * 359.97438 * 19 18 17 21 21 C 1.33532 * 121.82727 * 0.02562 * 20 19 18 22 22 C 1.40714 * 120.98132 * 180.02562 * 21 20 19 23 23 C 1.36059 * 119.74190 * 180.02562 * 22 21 20 24 24 C 1.39356 * 121.05638 * 359.67668 * 23 22 21 25 25 C 1.36243 * 120.83528 * 0.63520 * 24 23 22 26 26 C 1.40098 * 119.64131 * 359.39329 * 25 24 23 27 27 C 1.47432 * 125.64644 * 185.15619 * 9 7 2 28 28 H 0.96997 * 120.00035 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.88403 * 59.49590 * 10 9 7 30 30 H 1.09005 * 109.88190 * 298.33036 * 10 9 7 31 31 H 1.08998 * 110.72207 * 219.43985 * 11 10 9 32 32 H 1.09003 * 110.87428 * 96.23874 * 11 10 9 33 33 H 0.97002 * 120.00235 * 334.99809 * 14 12 11 34 34 H 1.07997 * 120.21188 * 359.95807 * 18 17 15 35 35 H 1.07996 * 119.06002 * 180.02562 * 19 18 17 36 36 H 1.07999 * 120.13359 * 0.02562 * 22 21 20 37 37 H 1.08000 * 119.47328 * 179.97438 * 23 22 21 38 38 H 1.08001 * 119.58144 * 180.31024 * 24 23 22 39 39 H 1.08000 * 120.17721 * 179.67831 * 25 24 23 40 40 H 1.08998 * 110.36372 * 85.31891 * 27 9 7 41 41 H 1.08999 * 110.37033 * 322.99378 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6033 1.9855 -1.3947 5 1 1.3988 2.6808 0.5918 6 1 3.4910 1.4730 0.8029 7 6 2.0103 -1.2021 -0.0005 8 1 3.0869 -1.2041 0.0850 9 7 1.3299 -2.3855 -0.1092 10 6 -0.1155 -2.5249 -0.3389 11 6 -0.4235 -4.0350 -0.4169 12 6 0.9503 -4.6510 -0.7916 13 1 1.1257 -4.5904 -1.8657 14 7 1.0502 -6.0356 -0.3234 15 6 1.8843 -6.8967 -0.9394 16 8 2.5531 -6.5247 -1.8836 17 6 1.9856 -8.2944 -0.4663 18 6 1.3262 -8.7130 0.6823 19 6 1.4434 -10.0368 1.0983 20 7 2.1615 -10.9095 0.4358 21 6 2.8225 -10.5784 -0.6762 22 6 3.5883 -11.5305 -1.3743 23 6 4.2520 -11.1655 -2.5045 24 6 4.1818 -9.8611 -2.9900 25 6 3.4554 -8.9112 -2.3372 26 6 2.7594 -9.2517 -1.1700 27 6 1.9257 -3.7308 -0.0161 28 1 -0.4850 0.8400 0.0004 29 1 -0.3902 -2.0416 -1.2765 30 1 -0.6671 -2.0763 0.4874 31 1 -1.1619 -4.2385 -1.1925 32 1 -0.7651 -4.4120 0.5471 33 1 0.5162 -6.3326 0.4300 34 1 0.7267 -8.0162 1.2492 35 1 0.9269 -10.3534 1.9924 36 1 3.6490 -12.5469 -1.0143 37 1 4.8388 -11.8996 -3.0366 38 1 4.7142 -9.5987 -3.8922 39 1 3.4125 -7.9022 -2.7201 40 1 1.9949 -4.0437 1.0257 41 1 2.9106 -3.7428 -0.4829 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015155826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:11 Heat of formation + Delta-G solvation = 35.407522 kcal Electronic energy + Delta-G solvation = -24605.476991 eV Core-core repulsion = 21064.319843 eV Total energy + Delta-G solvation = -3541.157148 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.17092 -40.65616 -38.92705 -38.08591 -35.77397 -34.59363 -33.71351 -31.55870 -31.29900 -30.75949 -28.92361 -26.77414 -25.77866 -24.56737 -23.83783 -22.32204 -21.90174 -21.66475 -19.34811 -18.98979 -18.58198 -18.27646 -17.43633 -16.72572 -16.48453 -16.28570 -15.99593 -15.84880 -15.61290 -15.19631 -14.91070 -14.78977 -14.30726 -14.15253 -14.08402 -13.94393 -13.70567 -12.97597 -12.79860 -12.79135 -12.65007 -12.45527 -12.32452 -12.15490 -12.05468 -11.84040 -11.59547 -11.54256 -11.39611 -10.74715 -10.38093 -10.23161 -9.80867 -9.29852 -8.93205 -7.87720 -5.25191 -0.96185 -0.22285 0.65974 1.44956 1.47456 1.55173 1.71572 1.85101 2.07784 2.48470 3.08991 3.27700 3.30071 3.38303 3.62361 3.63173 3.70185 3.83743 3.87215 4.01118 4.15863 4.18158 4.23273 4.41033 4.53833 4.55562 4.60923 4.67954 4.77111 4.84891 4.92150 4.99974 5.05693 5.17079 5.34694 5.40502 5.41124 5.50142 5.57208 5.62806 5.72506 5.88278 6.17503 6.39291 6.80549 7.05088 7.07922 7.72708 8.35723 9.21306 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.026664 B = 0.002780 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.849538 B =10070.335032 C =10651.560179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.061 4.061 3 Si 0.978 3.022 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.271 1.271 7 C -0.248 4.248 8 H 0.076 0.924 9 N -0.625 5.625 10 C 0.180 3.820 11 C -0.127 4.127 12 C 0.146 3.854 13 H 0.081 0.919 14 N -0.688 5.688 15 C 0.558 3.442 16 O -0.561 6.561 17 C -0.091 4.091 18 C -0.119 4.119 19 C 0.126 3.874 20 N -0.474 5.474 21 C 0.102 3.898 22 C -0.105 4.105 23 C -0.094 4.094 24 C -0.114 4.114 25 C -0.131 4.131 26 C -0.087 4.087 27 C 0.128 3.872 28 H 0.249 0.751 29 H 0.002 0.998 30 H 0.031 0.969 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.418 0.582 34 H 0.179 0.821 35 H 0.207 0.793 36 H 0.154 0.846 37 H 0.165 0.835 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.033 0.967 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.619 -25.041 0.393 25.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.254 4.254 3 Si 0.806 3.194 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.196 1.196 7 C -0.377 4.377 8 H 0.094 0.906 9 N -0.352 5.352 10 C 0.055 3.945 11 C -0.165 4.165 12 C 0.040 3.960 13 H 0.099 0.901 14 N -0.340 5.340 15 C 0.346 3.654 16 O -0.441 6.441 17 C -0.103 4.103 18 C -0.139 4.139 19 C -0.046 4.046 20 N -0.183 5.183 21 C -0.019 4.019 22 C -0.124 4.124 23 C -0.113 4.113 24 C -0.132 4.132 25 C -0.150 4.150 26 C -0.089 4.089 27 C 0.001 3.999 28 H 0.058 0.942 29 H 0.021 0.979 30 H 0.049 0.951 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.257 0.743 34 H 0.196 0.804 35 H 0.224 0.776 36 H 0.172 0.828 37 H 0.182 0.818 38 H 0.166 0.834 39 H 0.164 0.836 40 H 0.050 0.950 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.156 -25.441 -0.039 25.532 hybrid contribution 0.126 2.227 -0.101 2.233 sum 2.282 -23.214 -0.140 23.326 Atomic orbital electron populations 1.70136 1.06113 1.25513 1.57732 1.25625 0.96672 1.00876 1.02248 0.85110 0.77623 0.79054 0.77629 1.21341 1.21615 1.19572 1.19388 0.91090 0.83897 1.43312 0.90590 1.44653 1.04871 1.00670 1.84956 1.20993 0.84029 0.91550 0.97926 1.23002 0.95236 0.95080 1.03220 1.21885 0.96391 0.79318 0.98441 0.90116 1.45622 1.43281 1.09764 1.35314 1.18419 0.79386 0.85302 0.82308 1.90610 1.45144 1.78737 1.29612 1.20310 0.99780 0.92530 0.97644 1.22873 0.97557 0.98952 0.94523 1.23623 0.93535 0.88371 0.99033 1.67864 1.06821 1.37543 1.06070 1.19176 0.97913 0.91467 0.93372 1.21106 0.96337 0.99577 0.95352 1.21350 0.97915 0.96602 0.95441 1.21426 0.98057 0.93229 1.00488 1.22017 0.96222 1.02355 0.94379 1.18885 0.98831 0.94046 0.97171 1.21928 0.95415 0.85289 0.97255 0.94152 0.97948 0.95058 0.89129 0.88627 0.74321 0.80396 0.77601 0.82817 0.81764 0.83438 0.83620 0.94963 0.95567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.35 10.41 21.65 0.23 -56.12 16 2 C -0.06 -3.47 5.46 84.86 0.46 -3.01 16 3 Si 0.98 46.08 29.56 68.60 2.03 48.11 16 4 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 7 C -0.25 -14.18 10.27 84.03 0.86 -13.32 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.62 -32.35 3.39 -692.00 -2.35 -34.70 16 10 C 0.18 8.57 5.40 86.73 0.47 9.04 16 11 C -0.13 -4.12 6.60 31.78 0.21 -3.91 16 12 C 0.15 4.92 3.42 46.38 0.16 5.08 16 13 H 0.08 3.10 7.54 -2.38 -0.02 3.08 16 14 N -0.69 -17.39 5.15 -438.77 -2.26 -19.65 16 15 C 0.56 16.10 7.75 86.80 0.67 16.78 16 16 O -0.56 -20.52 13.17 -3.84 -0.05 -20.57 16 17 C -0.09 -2.20 5.94 -19.68 -0.12 -2.32 16 18 C -0.12 -1.86 9.59 22.67 0.22 -1.64 16 19 C 0.13 1.88 11.14 85.06 0.95 2.83 16 20 N -0.47 -9.93 10.30 -188.74 -1.94 -11.87 16 21 C 0.10 2.38 6.61 40.35 0.27 2.64 16 22 C -0.11 -1.96 9.99 22.37 0.22 -1.73 16 23 C -0.09 -1.49 9.94 22.03 0.22 -1.27 16 24 C -0.11 -2.27 9.96 22.07 0.22 -2.05 16 25 C -0.13 -3.49 9.25 22.26 0.21 -3.29 16 26 C -0.09 -2.27 5.76 -21.09 -0.12 -2.39 16 27 C 0.13 5.37 6.93 86.85 0.60 5.97 16 28 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.00 0.12 7.80 -2.39 -0.02 0.10 16 30 H 0.03 1.66 7.10 -2.38 -0.02 1.64 16 31 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.10 2.53 8.00 -2.39 -0.02 2.51 16 33 H 0.42 7.14 6.74 -92.71 -0.62 6.52 16 34 H 0.18 1.40 6.55 -2.91 -0.02 1.38 16 35 H 0.21 1.24 8.06 -2.91 -0.02 1.21 16 36 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 37 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 38 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 39 H 0.15 4.55 4.98 -2.91 -0.01 4.54 16 40 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.03 1.17 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -76.46 338.82 1.59 -74.87 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.44 Total: 12.53 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 5.50 Total: 7.41 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -6.33 Total: -122.34 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.05 Total: -20.57 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -76.46 1.59 -74.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015155826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.281 kcal (2) G-P(sol) polarization free energy of solvation -76.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds