Wall clock time and date at job start Fri Apr 10 2020 22:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99964 * 2 1 4 4 H 1.48499 * 109.47125 * 269.99821 * 3 2 1 5 5 H 1.48496 * 109.47505 * 30.00061 * 3 2 1 6 6 H 1.48499 * 109.47249 * 150.00277 * 3 2 1 7 7 C 1.38808 * 119.99497 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99720 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00569 * 359.97438 * 7 2 1 10 10 C 1.47026 * 125.64360 * 359.97438 * 9 7 2 11 11 C 1.54327 * 107.26723 * 178.98482 * 10 9 7 12 12 C 1.55158 * 102.94172 * 337.80840 * 11 10 9 13 13 H 1.08999 * 111.00376 * 153.61323 * 12 11 10 14 14 N 1.46497 * 111.00552 * 277.42673 * 12 11 10 15 15 C 1.34775 * 120.00131 * 205.00328 * 14 12 11 16 16 O 1.21584 * 120.00148 * 359.97438 * 15 14 12 17 17 C 1.47558 * 120.00045 * 180.02562 * 15 14 12 18 18 C 1.38694 * 120.38521 * 354.05096 * 17 15 14 19 19 C 1.38969 * 120.53400 * 179.81395 * 18 17 15 20 20 C 1.36216 * 121.23744 * 0.45665 * 19 18 17 21 21 C 1.40714 * 120.19837 * 359.52066 * 20 19 18 22 22 N 1.33682 * 120.93458 * 180.27663 * 21 20 19 23 23 C 1.31071 * 121.33963 * 180.02562 * 22 21 20 24 24 C 1.39334 * 121.70598 * 359.95775 * 23 22 21 25 25 C 1.36678 * 119.86675 * 0.02562 * 24 23 22 26 26 C 1.40473 * 118.17231 * 359.97438 * 25 24 23 27 27 C 1.47417 * 125.64998 * 180.02562 * 9 7 2 28 28 H 0.97003 * 119.99631 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.87720 * 59.56957 * 10 9 7 30 30 H 1.08996 * 109.88171 * 298.40545 * 10 9 7 31 31 H 1.08997 * 110.71851 * 219.44939 * 11 10 9 32 32 H 1.08999 * 110.71646 * 96.17008 * 11 10 9 33 33 H 0.97000 * 120.00451 * 25.00165 * 14 12 11 34 34 H 1.07993 * 119.73235 * 0.04951 * 18 17 15 35 35 H 1.08005 * 119.38385 * 180.25556 * 19 18 17 36 36 H 1.08001 * 119.89698 * 179.80457 * 20 19 18 37 37 H 1.08000 * 119.14750 * 180.02562 * 23 22 21 38 38 H 1.08001 * 120.06844 * 179.97438 * 24 23 22 39 39 H 1.08003 * 120.91053 * 180.02562 * 25 24 23 40 40 H 1.09004 * 110.37014 * 85.24322 * 27 9 7 41 41 H 1.09001 * 110.36799 * 322.92353 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1376 -2.5327 0.0028 11 6 -0.4486 -4.0441 -0.0224 12 6 0.8514 -4.6566 -0.6074 13 1 0.9831 -5.6858 -0.2734 14 7 0.8571 -4.5776 -2.0703 15 6 1.5884 -5.4518 -2.7895 16 8 2.2438 -6.3058 -2.2244 17 6 1.5945 -5.3718 -4.2629 18 6 0.7578 -4.4825 -4.9207 19 6 0.7639 -4.4019 -6.3081 20 6 1.5790 -5.1945 -7.0582 21 6 2.4451 -6.1111 -6.4338 22 7 3.2552 -6.8922 -7.1553 23 6 4.0647 -7.7489 -6.5820 24 6 4.1223 -7.8879 -5.1968 25 6 3.3200 -7.1185 -4.4016 26 6 2.4545 -6.2021 -5.0217 27 6 1.9333 -3.7311 0.0028 28 1 -0.4850 0.8401 0.0004 29 1 -0.5582 -2.0529 -0.8810 30 1 -0.5538 -2.0835 0.9045 31 1 -1.2990 -4.2521 -0.6717 32 1 -0.6311 -4.4171 0.9854 33 1 0.3345 -3.8961 -2.5212 34 1 0.0991 -3.8449 -4.3500 35 1 0.1076 -3.6998 -6.8010 36 1 1.5638 -5.1160 -8.1352 37 1 4.7044 -8.3623 -7.1993 38 1 4.7990 -8.6027 -4.7524 39 1 3.3511 -7.2120 -3.3261 40 1 2.1670 -4.0410 1.0214 41 1 2.8325 -3.7412 -0.6132 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015452342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:15 Heat of formation + Delta-G solvation = 56.396009 kcal Electronic energy + Delta-G solvation = -25106.049766 eV Core-core repulsion = 21565.802747 eV Total energy + Delta-G solvation = -3540.247019 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.12355 -39.48125 -37.42006 -36.93763 -33.94411 -33.36353 -32.03194 -30.66229 -30.22921 -29.14037 -27.29727 -24.90796 -24.43642 -23.58140 -23.25131 -20.79632 -20.13863 -20.00401 -18.38165 -17.64857 -16.98596 -16.81816 -16.10729 -15.94630 -15.02404 -14.88410 -14.74054 -14.50751 -14.20568 -13.91753 -13.74988 -13.46526 -13.24426 -12.76795 -12.53762 -12.22612 -11.98869 -11.87240 -11.79246 -11.46212 -11.01727 -10.92667 -10.80433 -10.54957 -10.42359 -10.17597 -10.11778 -10.01299 -9.72866 -9.21605 -8.93955 -8.89135 -8.62046 -8.35120 -6.87624 -5.76905 -3.09667 0.04837 0.69467 1.68132 2.57936 3.20702 3.33611 3.37077 3.42870 3.44214 4.05216 4.12818 4.46157 4.53809 4.60446 4.69436 4.80694 4.94248 5.00666 5.20479 5.22560 5.32392 5.40779 5.43155 5.66151 5.69997 5.73012 5.76882 5.84314 5.98843 6.12255 6.15308 6.22893 6.30910 6.37992 6.43003 6.53107 6.62689 6.66233 6.95573 7.47421 7.49946 7.71147 7.75115 7.76363 8.19488 8.35430 9.17179 9.76923 10.42106 11.34972 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.016934 B = 0.003585 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.119724 B = 7808.845633 C = 8306.784675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.175 3.825 11 C -0.154 4.154 12 C 0.126 3.874 13 H 0.093 0.907 14 N -0.692 5.692 15 C 0.560 3.440 16 O -0.544 6.544 17 C -0.107 4.107 18 C -0.073 4.073 19 C -0.108 4.108 20 C -0.071 4.071 21 C 0.117 3.883 22 N -0.480 5.480 23 C 0.130 3.870 24 C -0.183 4.183 25 C -0.057 4.057 26 C -0.066 4.066 27 C 0.125 3.875 28 H 0.252 0.748 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.403 0.597 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.157 0.843 38 H 0.137 0.863 39 H 0.180 0.820 40 H 0.030 0.970 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.790 -13.605 -11.445 17.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.050 3.950 11 C -0.193 4.193 12 C 0.021 3.979 13 H 0.111 0.889 14 N -0.342 5.342 15 C 0.348 3.652 16 O -0.425 6.425 17 C -0.111 4.111 18 C -0.092 4.092 19 C -0.128 4.128 20 C -0.090 4.090 21 C -0.004 4.004 22 N -0.188 5.188 23 C -0.043 4.043 24 C -0.203 4.203 25 C -0.082 4.082 26 C -0.069 4.069 27 C -0.002 4.002 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.239 0.761 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.175 0.825 38 H 0.155 0.845 39 H 0.196 0.804 40 H 0.047 0.953 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.080 -13.789 -11.913 18.255 hybrid contribution 0.251 1.286 0.660 1.467 sum 1.331 -12.503 -11.253 16.874 Atomic orbital electron populations 1.69949 1.04811 1.25016 1.57350 1.24767 0.95726 0.97581 1.02291 0.86129 0.78647 0.83499 0.77566 1.21642 1.21662 1.20721 1.19056 0.90447 0.82370 1.43533 0.90548 1.44483 1.01457 0.99880 1.87273 1.21189 0.84582 0.87892 1.01328 1.23241 0.95593 1.00068 1.00384 1.22221 0.97678 0.99714 0.78285 0.88876 1.45792 1.47671 1.33096 1.07592 1.18031 0.79510 0.81439 0.86246 1.90517 1.43029 1.36854 1.72100 1.19950 0.99060 0.98843 0.93208 1.21530 0.96796 0.95810 0.95035 1.20856 0.99242 0.99253 0.93426 1.20976 0.93775 0.93571 1.00698 1.18841 0.96114 0.96247 0.89182 1.68037 1.05689 1.05691 1.39417 1.22978 0.94416 0.93911 0.92976 1.22043 1.01501 1.01889 0.94902 1.22708 0.90680 0.90760 1.04088 1.18635 0.97430 0.97368 0.93465 1.21944 0.94717 0.86358 0.97173 0.93785 0.93598 0.93658 0.91535 0.90762 0.76056 0.84639 0.84431 0.84421 0.82532 0.84505 0.80351 0.95286 0.93920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.08 10.31 55.49 0.57 -25.51 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.16 10.28 -15.06 -0.15 -6.31 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -14.77 3.39 -170.07 -0.58 -15.34 16 10 C 0.17 3.93 5.36 -3.06 -0.02 3.91 16 11 C -0.15 -2.60 6.55 -24.89 -0.16 -2.76 16 12 C 0.13 2.16 3.43 -65.78 -0.23 1.93 16 13 H 0.09 1.52 7.54 -51.93 -0.39 1.13 16 14 N -0.69 -11.01 5.14 -52.76 -0.27 -11.28 16 15 C 0.56 9.02 7.73 -12.46 -0.10 8.93 16 16 O -0.54 -9.71 13.05 5.29 0.07 -9.64 16 17 C -0.11 -1.53 5.90 -104.65 -0.62 -2.15 16 18 C -0.07 -0.87 9.51 -39.14 -0.37 -1.24 16 19 C -0.11 -1.12 9.92 -40.04 -0.40 -1.52 16 20 C -0.07 -0.81 9.96 -39.37 -0.39 -1.20 16 21 C 0.12 1.60 6.60 -84.88 -0.56 1.04 16 22 N -0.48 -6.32 10.34 -10.99 -0.11 -6.44 16 23 C 0.13 1.40 11.15 -17.47 -0.19 1.21 16 24 C -0.18 -2.01 10.03 -39.74 -0.40 -2.41 16 25 C -0.06 -0.79 9.29 -39.30 -0.37 -1.15 16 26 C -0.07 -0.96 5.76 -106.54 -0.61 -1.58 16 27 C 0.13 2.58 6.93 -2.53 -0.02 2.57 16 28 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.05 1.12 7.38 -51.93 -0.38 0.73 16 30 H 0.05 1.15 7.51 -51.93 -0.39 0.76 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.40 6.04 6.74 -40.82 -0.28 5.76 16 34 H 0.14 1.42 6.42 -52.49 -0.34 1.08 16 35 H 0.14 1.02 8.06 -52.48 -0.42 0.59 16 36 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.18 2.65 4.96 -52.50 -0.26 2.39 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 338.49 15.07 5.10 5.10 Total: -1.00 -31.91 338.49 -9.89 -41.81 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -4.97 Total: 5.57 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -4.68 Total: -1.04 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.39 Total: -58.56 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.07 Total: -9.64 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.91 -9.89 -41.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015452342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.202 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds