Wall clock time and date at job start Fri Apr 10 2020 22:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99964 * 2 1 4 4 H 1.48499 * 109.47125 * 269.99821 * 3 2 1 5 5 H 1.48496 * 109.47505 * 30.00061 * 3 2 1 6 6 H 1.48499 * 109.47249 * 150.00277 * 3 2 1 7 7 C 1.38808 * 119.99497 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99720 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00569 * 359.97438 * 7 2 1 10 10 C 1.47026 * 125.64360 * 359.97438 * 9 7 2 11 11 C 1.54327 * 107.26723 * 178.98482 * 10 9 7 12 12 C 1.55158 * 102.94172 * 337.80840 * 11 10 9 13 13 H 1.08999 * 111.00376 * 153.61323 * 12 11 10 14 14 N 1.46497 * 111.00552 * 277.42673 * 12 11 10 15 15 C 1.34775 * 120.00131 * 205.00328 * 14 12 11 16 16 O 1.21584 * 120.00148 * 359.97438 * 15 14 12 17 17 C 1.47558 * 120.00045 * 180.02562 * 15 14 12 18 18 C 1.38694 * 120.38521 * 354.05096 * 17 15 14 19 19 C 1.38969 * 120.53400 * 179.81395 * 18 17 15 20 20 C 1.36216 * 121.23744 * 0.45665 * 19 18 17 21 21 C 1.40714 * 120.19837 * 359.52066 * 20 19 18 22 22 N 1.33682 * 120.93458 * 180.27663 * 21 20 19 23 23 C 1.31071 * 121.33963 * 180.02562 * 22 21 20 24 24 C 1.39334 * 121.70598 * 359.95775 * 23 22 21 25 25 C 1.36678 * 119.86675 * 0.02562 * 24 23 22 26 26 C 1.40473 * 118.17231 * 359.97438 * 25 24 23 27 27 C 1.47417 * 125.64998 * 180.02562 * 9 7 2 28 28 H 0.97003 * 119.99631 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.87720 * 59.56957 * 10 9 7 30 30 H 1.08996 * 109.88171 * 298.40545 * 10 9 7 31 31 H 1.08997 * 110.71851 * 219.44939 * 11 10 9 32 32 H 1.08999 * 110.71646 * 96.17008 * 11 10 9 33 33 H 0.97000 * 120.00451 * 25.00165 * 14 12 11 34 34 H 1.07993 * 119.73235 * 0.04951 * 18 17 15 35 35 H 1.08005 * 119.38385 * 180.25556 * 19 18 17 36 36 H 1.08001 * 119.89698 * 179.80457 * 20 19 18 37 37 H 1.08000 * 119.14750 * 180.02562 * 23 22 21 38 38 H 1.08001 * 120.06844 * 179.97438 * 24 23 22 39 39 H 1.08003 * 120.91053 * 180.02562 * 25 24 23 40 40 H 1.09004 * 110.37014 * 85.24322 * 27 9 7 41 41 H 1.09001 * 110.36799 * 322.92353 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1376 -2.5327 0.0028 11 6 -0.4486 -4.0441 -0.0224 12 6 0.8514 -4.6566 -0.6074 13 1 0.9831 -5.6858 -0.2734 14 7 0.8571 -4.5776 -2.0703 15 6 1.5884 -5.4518 -2.7895 16 8 2.2438 -6.3058 -2.2244 17 6 1.5945 -5.3718 -4.2629 18 6 0.7578 -4.4825 -4.9207 19 6 0.7639 -4.4019 -6.3081 20 6 1.5790 -5.1945 -7.0582 21 6 2.4451 -6.1111 -6.4338 22 7 3.2552 -6.8922 -7.1553 23 6 4.0647 -7.7489 -6.5820 24 6 4.1223 -7.8879 -5.1968 25 6 3.3200 -7.1185 -4.4016 26 6 2.4545 -6.2021 -5.0217 27 6 1.9333 -3.7311 0.0028 28 1 -0.4850 0.8401 0.0004 29 1 -0.5582 -2.0529 -0.8810 30 1 -0.5538 -2.0835 0.9045 31 1 -1.2990 -4.2521 -0.6717 32 1 -0.6311 -4.4171 0.9854 33 1 0.3345 -3.8961 -2.5212 34 1 0.0991 -3.8449 -4.3500 35 1 0.1076 -3.6998 -6.8010 36 1 1.5638 -5.1160 -8.1352 37 1 4.7044 -8.3623 -7.1993 38 1 4.7990 -8.6027 -4.7524 39 1 3.3511 -7.2120 -3.3261 40 1 2.1670 -4.0410 1.0214 41 1 2.8325 -3.7412 -0.6132 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015452342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:14 Heat of formation + Delta-G solvation = 36.449410 kcal Electronic energy + Delta-G solvation = -25106.914716 eV Core-core repulsion = 21565.802747 eV Total energy + Delta-G solvation = -3541.111968 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.11159 -40.71481 -38.92051 -37.91475 -35.52854 -34.32864 -33.75811 -31.55619 -31.48673 -30.71526 -28.91648 -26.55048 -25.64531 -24.52812 -24.32732 -22.15274 -21.76299 -21.43059 -19.40016 -18.93119 -18.49608 -17.87488 -17.31895 -17.13016 -16.66004 -16.23499 -15.89926 -15.68500 -15.62838 -15.19919 -14.98628 -14.78295 -14.12375 -14.06403 -13.94866 -13.74400 -13.57707 -13.07868 -12.91833 -12.79966 -12.73037 -12.35523 -12.29596 -12.09852 -12.01798 -11.81894 -11.60612 -11.51102 -11.24949 -10.72457 -10.27979 -10.18442 -9.83113 -9.33221 -8.86355 -7.85605 -5.19565 -0.90146 -0.20476 0.67654 1.45996 1.46398 1.55143 1.63171 2.03908 2.20185 2.48774 3.09936 3.30301 3.33351 3.49377 3.66564 3.71283 3.80949 3.81924 3.87584 4.06226 4.07270 4.15595 4.30887 4.41746 4.45520 4.67383 4.71312 4.77283 4.78445 4.88077 4.94738 5.02313 5.03628 5.17745 5.23693 5.32077 5.44194 5.53062 5.58988 5.67869 5.77031 5.78973 6.19886 6.47328 6.85416 7.11487 7.12092 7.76926 8.40719 9.24115 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.016934 B = 0.003585 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.119724 B = 7808.845633 C = 8306.784675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.056 4.056 3 Si 0.972 3.028 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.621 5.621 10 C 0.183 3.817 11 C -0.134 4.134 12 C 0.140 3.860 13 H 0.108 0.892 14 N -0.692 5.692 15 C 0.560 3.440 16 O -0.567 6.567 17 C -0.136 4.136 18 C -0.065 4.065 19 C -0.105 4.105 20 C -0.069 4.069 21 C 0.095 3.905 22 N -0.495 5.495 23 C 0.128 3.872 24 C -0.170 4.170 25 C -0.087 4.087 26 C -0.084 4.084 27 C 0.122 3.878 28 H 0.248 0.752 29 H 0.022 0.978 30 H 0.010 0.990 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.408 0.592 34 H 0.149 0.851 35 H 0.173 0.827 36 H 0.160 0.840 37 H 0.196 0.804 38 H 0.167 0.833 39 H 0.163 0.837 40 H 0.034 0.966 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.857 -14.385 -13.114 19.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.250 4.250 3 Si 0.801 3.199 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.348 5.348 10 C 0.058 3.942 11 C -0.172 4.172 12 C 0.035 3.965 13 H 0.126 0.874 14 N -0.341 5.341 15 C 0.349 3.651 16 O -0.449 6.449 17 C -0.140 4.140 18 C -0.084 4.084 19 C -0.125 4.125 20 C -0.087 4.087 21 C -0.026 4.026 22 N -0.204 5.204 23 C -0.044 4.044 24 C -0.190 4.190 25 C -0.113 4.113 26 C -0.087 4.087 27 C -0.004 4.004 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.028 0.972 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.244 0.756 34 H 0.166 0.834 35 H 0.190 0.810 36 H 0.177 0.823 37 H 0.213 0.787 38 H 0.185 0.815 39 H 0.179 0.821 40 H 0.051 0.949 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.151 -14.591 -13.591 19.973 hybrid contribution 0.309 1.471 1.133 1.882 sum 1.460 -13.120 -12.458 18.151 Atomic orbital electron populations 1.70138 1.05839 1.25235 1.58064 1.25482 0.96593 1.00377 1.02509 0.85182 0.77597 0.79692 0.77465 1.21256 1.21848 1.20118 1.19327 0.90649 0.83903 1.43295 0.91064 1.44704 1.02515 1.00472 1.87083 1.20983 0.83319 0.91439 0.98461 1.23098 0.96349 0.95546 1.02229 1.22030 0.96125 0.99394 0.78981 0.87423 1.45747 1.47968 1.33381 1.07048 1.18353 0.78748 0.80838 0.87157 1.90509 1.43833 1.37725 1.72821 1.19876 1.01130 1.00913 0.92079 1.21804 0.95775 0.94692 0.96085 1.21214 0.99256 0.99386 0.92611 1.21323 0.92860 0.92628 1.01910 1.19178 0.97137 0.97296 0.88979 1.68100 1.06242 1.06304 1.39716 1.23631 0.93986 0.93412 0.93353 1.22389 1.00496 1.01057 0.95016 1.22662 0.92470 0.92463 1.03687 1.18829 0.97883 0.97818 0.94192 1.22061 0.95255 0.85662 0.97425 0.94294 0.95931 0.97207 0.88667 0.88953 0.75564 0.83388 0.80956 0.82261 0.78697 0.81510 0.82053 0.94855 0.95515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.30 10.31 21.65 0.22 -54.08 16 2 C -0.06 -3.11 5.49 84.86 0.47 -2.64 16 3 Si 0.97 45.19 29.55 68.60 2.03 47.22 16 4 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.24 -13.48 10.28 84.03 0.86 -12.62 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.62 -30.87 3.39 -691.99 -2.35 -33.22 16 10 C 0.18 8.30 5.36 86.73 0.47 8.77 16 11 C -0.13 -4.32 6.55 31.78 0.21 -4.11 16 12 C 0.14 4.68 3.43 46.38 0.16 4.84 16 13 H 0.11 3.36 7.54 -2.39 -0.02 3.34 16 14 N -0.69 -21.72 5.14 -439.11 -2.26 -23.97 16 15 C 0.56 18.16 7.73 86.70 0.67 18.83 16 16 O -0.57 -20.62 13.05 -3.98 -0.05 -20.67 16 17 C -0.14 -3.91 5.90 -19.88 -0.12 -4.03 16 18 C -0.06 -1.47 9.51 22.55 0.21 -1.26 16 19 C -0.11 -1.94 9.92 21.97 0.22 -1.72 16 20 C -0.07 -1.42 9.96 22.40 0.22 -1.20 16 21 C 0.09 2.50 6.60 40.27 0.27 2.76 16 22 N -0.50 -12.23 10.34 -188.69 -1.95 -14.18 16 23 C 0.13 2.50 11.15 85.07 0.95 3.45 16 24 C -0.17 -3.49 10.03 22.17 0.22 -3.27 16 25 C -0.09 -2.43 9.29 22.45 0.21 -2.22 16 26 C -0.08 -2.45 5.76 -21.10 -0.12 -2.57 16 27 C 0.12 5.09 6.93 86.86 0.60 5.69 16 28 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 29 H 0.02 1.12 7.38 -2.39 -0.02 1.10 16 30 H 0.01 0.51 7.51 -2.39 -0.02 0.49 16 31 H 0.09 2.57 8.14 -2.39 -0.02 2.56 16 32 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.41 11.96 6.74 -92.71 -0.62 11.34 16 34 H 0.15 2.89 6.42 -2.91 -0.02 2.87 16 35 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 37 H 0.20 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 39 H 0.16 5.00 4.96 -3.18 -0.02 4.98 16 40 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -71.10 338.49 1.58 -69.52 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.44 Total: 20.67 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 5.50 Total: 8.70 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -6.33 Total: -125.45 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.05 Total: -20.67 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -71.10 1.58 -69.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015452342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.968 kcal (2) G-P(sol) polarization free energy of solvation -71.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds