Wall clock time and date at job start Fri Apr 10 2020 22:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00133 * 2 1 4 4 H 1.48501 * 109.47214 * 265.00221 * 3 2 1 5 5 H 1.48504 * 109.47173 * 24.99797 * 3 2 1 6 6 H 1.48501 * 109.47280 * 144.99994 * 3 2 1 7 7 C 1.38810 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00197 * 185.22756 * 7 2 1 9 9 N 1.36939 * 120.00339 * 5.22549 * 7 2 1 10 10 C 1.47029 * 125.64244 * 5.11556 * 9 7 2 11 11 C 1.54320 * 107.26705 * 178.96221 * 10 9 7 12 12 C 1.55151 * 102.94393 * 337.80587 * 11 10 9 13 13 H 1.08999 * 111.00701 * 277.38752 * 12 11 10 14 14 N 1.46500 * 111.00396 * 153.57861 * 12 11 10 15 15 C 1.34777 * 120.00076 * 155.00318 * 14 12 11 16 16 O 1.21587 * 119.99978 * 359.97438 * 15 14 12 17 17 C 1.47550 * 120.00373 * 180.02562 * 15 14 12 18 18 C 1.38700 * 120.38473 * 354.01500 * 17 15 14 19 19 C 1.38966 * 120.53836 * 180.02562 * 18 17 15 20 20 C 1.36212 * 121.24077 * 0.02562 * 19 18 17 21 21 C 1.40709 * 120.19544 * 0.24879 * 20 19 18 22 22 N 1.33689 * 120.93488 * 180.33767 * 21 20 19 23 23 C 1.31062 * 121.34146 * 179.79313 * 22 21 20 24 24 C 1.39337 * 121.70613 * 359.63781 * 23 22 21 25 25 C 1.36675 * 119.87046 * 0.02734 * 24 23 22 26 26 C 1.40469 * 118.16852 * 359.97438 * 25 24 23 27 27 C 1.47420 * 125.65320 * 185.14215 * 9 7 2 28 28 H 0.96998 * 119.99786 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.88365 * 59.54481 * 10 9 7 30 30 H 1.08996 * 109.88063 * 298.37448 * 10 9 7 31 31 H 1.09008 * 110.72185 * 219.43974 * 11 10 9 32 32 H 1.09000 * 110.87168 * 96.24259 * 11 10 9 33 33 H 0.96998 * 120.00092 * 335.00193 * 14 12 11 34 34 H 1.08005 * 119.73072 * 0.02608 * 18 17 15 35 35 H 1.08001 * 119.38234 * 179.97438 * 19 18 17 36 36 H 1.07992 * 119.90112 * 179.97438 * 20 19 18 37 37 H 1.08004 * 119.14857 * 179.66533 * 23 22 21 38 38 H 1.08009 * 120.06737 * 180.02562 * 24 23 22 39 39 H 1.08006 * 120.91747 * 179.97438 * 25 24 23 40 40 H 1.08995 * 110.36898 * 85.26593 * 27 9 7 41 41 H 1.09000 * 110.36259 * 322.94275 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6034 1.9854 -1.3947 5 1 1.3988 2.6809 0.5917 6 1 3.4910 1.4730 0.8030 7 6 2.0103 -1.2021 -0.0005 8 1 3.0869 -1.2041 0.0847 9 7 1.3299 -2.3856 -0.1091 10 6 -0.1159 -2.5249 -0.3370 11 6 -0.4240 -4.0350 -0.4143 12 6 0.9493 -4.6511 -0.7905 13 1 1.1235 -4.5908 -1.8648 14 7 1.0498 -6.0356 -0.3221 15 6 1.8830 -6.8969 -0.9388 16 8 2.5510 -6.5250 -1.8842 17 6 1.9838 -8.2915 -0.4675 18 6 1.3208 -8.6929 0.6828 19 6 1.4140 -10.0054 1.1299 20 6 2.1541 -10.9300 0.4571 21 6 2.8484 -10.5665 -0.7115 22 7 3.5738 -11.4636 -1.3871 23 6 4.2203 -11.1347 -2.4786 24 6 4.1787 -9.8402 -2.9925 25 6 3.4496 -8.8771 -2.3530 26 6 2.7588 -9.2354 -1.1836 27 6 1.9257 -3.7309 -0.0162 28 1 -0.4850 0.8400 0.0004 29 1 -0.3916 -2.0418 -1.2743 30 1 -0.6664 -2.0761 0.4898 31 1 -1.1633 -4.2387 -1.1890 32 1 -0.7645 -4.4118 0.5502 33 1 0.5166 -6.3324 0.4319 34 1 0.7274 -7.9796 1.2355 35 1 0.8904 -10.2976 2.0282 36 1 2.2118 -11.9440 0.8242 37 1 4.8001 -11.8866 -2.9934 38 1 4.7215 -9.5983 -3.8944 39 1 3.4059 -7.8682 -2.7362 40 1 1.9961 -4.0435 1.0256 41 1 2.9100 -3.7429 -0.4842 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015452346.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:19 Heat of formation + Delta-G solvation = 57.109211 kcal Electronic energy + Delta-G solvation = -24620.179595 eV Core-core repulsion = 21079.963503 eV Total energy + Delta-G solvation = -3540.216092 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.24518 -39.55199 -37.43551 -37.04986 -34.24962 -33.48043 -32.07626 -30.78611 -30.38908 -29.12973 -27.18124 -25.02560 -24.44653 -23.67875 -23.22624 -20.85471 -20.43866 -20.03899 -18.48638 -17.77272 -17.08779 -16.86848 -16.23617 -16.00738 -15.09801 -15.02860 -14.80668 -14.51719 -14.29158 -14.04482 -13.96966 -13.39529 -13.18111 -12.74742 -12.49678 -12.33911 -12.29893 -11.95559 -11.83615 -11.60288 -11.05318 -10.97841 -10.79387 -10.66355 -10.47468 -10.20872 -10.12164 -9.93801 -9.73588 -9.32754 -9.06415 -8.92689 -8.63936 -8.48510 -6.86906 -5.73842 -3.08870 -0.08396 0.57016 1.56572 2.44733 3.11433 3.12860 3.40177 3.45191 3.46553 3.92969 4.01476 4.37470 4.44542 4.50389 4.57023 4.66359 4.84244 4.88017 5.08995 5.15235 5.24664 5.39958 5.52000 5.54184 5.60593 5.66960 5.71668 5.73789 5.90037 5.97005 6.09393 6.14096 6.25481 6.33464 6.36404 6.50857 6.57861 6.63930 6.89294 7.44653 7.52709 7.59314 7.65675 7.77497 8.19618 8.24363 9.18366 9.78574 10.43159 11.37262 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.026579 B = 0.002788 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.197986 B =10039.263706 C =10623.899840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.176 3.824 11 C -0.149 4.149 12 C 0.125 3.875 13 H 0.100 0.900 14 N -0.705 5.705 15 C 0.558 3.442 16 O -0.533 6.533 17 C -0.106 4.106 18 C -0.077 4.077 19 C -0.110 4.110 20 C -0.070 4.070 21 C 0.118 3.882 22 N -0.481 5.481 23 C 0.132 3.868 24 C -0.181 4.181 25 C -0.058 4.058 26 C -0.068 4.068 27 C 0.129 3.871 28 H 0.253 0.747 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.398 0.602 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.159 0.841 38 H 0.139 0.861 39 H 0.180 0.820 40 H 0.020 0.980 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.600 -22.729 -0.450 22.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.051 3.949 11 C -0.188 4.188 12 C 0.021 3.979 13 H 0.118 0.882 14 N -0.355 5.355 15 C 0.345 3.655 16 O -0.412 6.412 17 C -0.110 4.110 18 C -0.096 4.096 19 C -0.130 4.130 20 C -0.089 4.089 21 C -0.003 4.003 22 N -0.189 5.189 23 C -0.040 4.040 24 C -0.201 4.201 25 C -0.083 4.083 26 C -0.070 4.070 27 C 0.002 3.998 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.233 0.767 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.176 0.824 38 H 0.156 0.844 39 H 0.197 0.803 40 H 0.038 0.962 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.976 -23.032 -0.698 23.127 hybrid contribution 0.148 1.533 0.099 1.543 sum 2.124 -21.499 -0.599 21.612 Atomic orbital electron populations 1.69935 1.04912 1.25166 1.56977 1.24809 0.95730 0.97734 1.02133 0.86114 0.78557 0.83229 0.77726 1.21489 1.21668 1.20699 1.19056 0.90730 0.82368 1.43489 0.90398 1.44380 1.03754 0.99754 1.85059 1.21180 0.85207 0.87509 1.00977 1.23184 0.95102 0.99985 1.00496 1.22397 0.97409 0.78123 1.00004 0.88237 1.45956 1.43232 1.11582 1.34755 1.18085 0.79913 0.84645 0.82814 1.90568 1.44201 1.78153 1.28292 1.19972 1.00375 0.93595 0.97019 1.21473 0.96871 0.96634 0.94626 1.20830 0.99163 0.92653 1.00356 1.20985 0.94660 1.00409 0.92808 1.18855 0.96732 0.89050 0.95677 1.68047 1.07892 1.35129 1.07818 1.23008 0.94269 0.95333 0.91414 1.22076 1.01543 0.94336 1.02156 1.22728 0.90853 1.02687 0.92021 1.18652 0.98335 0.93633 0.96415 1.21812 0.95458 0.86208 0.96329 0.93689 0.94418 0.92191 0.91547 0.91907 0.76692 0.84793 0.84479 0.84383 0.82412 0.84360 0.80293 0.96247 0.93823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.82 10.41 55.49 0.58 -26.24 16 2 C -0.01 -0.22 5.46 -17.43 -0.10 -0.32 16 3 Si 0.91 22.13 29.56 -169.99 -5.02 17.11 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.23 -6.40 10.27 -15.06 -0.15 -6.55 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -15.34 3.39 -170.08 -0.58 -15.92 16 10 C 0.18 4.14 5.40 -3.06 -0.02 4.12 16 11 C -0.15 -2.56 6.60 -24.90 -0.16 -2.73 16 12 C 0.13 2.18 3.42 -65.78 -0.23 1.96 16 13 H 0.10 1.90 7.54 -51.93 -0.39 1.51 16 14 N -0.71 -9.68 5.15 -52.76 -0.27 -9.95 16 15 C 0.56 8.20 7.73 -12.46 -0.10 8.10 16 16 O -0.53 -9.38 13.05 5.29 0.07 -9.31 16 17 C -0.11 -1.31 5.90 -104.65 -0.62 -1.93 16 18 C -0.08 -0.72 9.51 -39.14 -0.37 -1.09 16 19 C -0.11 -0.89 9.92 -40.04 -0.40 -1.28 16 20 C -0.07 -0.67 9.96 -39.38 -0.39 -1.06 16 21 C 0.12 1.44 6.60 -84.88 -0.56 0.88 16 22 N -0.48 -5.76 10.34 -10.99 -0.11 -5.87 16 23 C 0.13 1.30 11.15 -17.47 -0.19 1.11 16 24 C -0.18 -1.84 10.03 -39.74 -0.40 -2.24 16 25 C -0.06 -0.74 9.29 -39.31 -0.37 -1.11 16 26 C -0.07 -0.88 5.76 -106.53 -0.61 -1.50 16 27 C 0.13 2.72 6.93 -2.53 -0.02 2.70 16 28 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.04 0.97 7.80 -51.93 -0.41 0.57 16 30 H 0.06 1.56 7.10 -51.93 -0.37 1.19 16 31 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 32 H 0.06 0.95 8.00 -51.93 -0.42 0.54 16 33 H 0.40 4.21 6.64 -40.82 -0.27 3.94 16 34 H 0.13 0.91 6.43 -52.48 -0.34 0.57 16 35 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.16 1.00 8.06 -52.48 -0.42 0.57 16 38 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 39 H 0.18 2.55 4.96 -52.50 -0.26 2.29 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 338.43 15.07 5.10 5.10 Total: -1.00 -33.32 338.43 -9.88 -43.19 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -4.96 Total: 2.82 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -4.68 Total: -0.93 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: -0.38 Total: -57.98 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.07 Total: -9.31 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.32 -9.88 -43.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015452346.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.303 kcal (2) G-P(sol) polarization free energy of solvation -33.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds