Wall clock time and date at job start Fri Apr 10 2020 22:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00133 * 2 1 4 4 H 1.48501 * 109.47214 * 265.00221 * 3 2 1 5 5 H 1.48504 * 109.47173 * 24.99797 * 3 2 1 6 6 H 1.48501 * 109.47280 * 144.99994 * 3 2 1 7 7 C 1.38810 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00197 * 185.22756 * 7 2 1 9 9 N 1.36939 * 120.00339 * 5.22549 * 7 2 1 10 10 C 1.47029 * 125.64244 * 5.11556 * 9 7 2 11 11 C 1.54320 * 107.26705 * 178.96221 * 10 9 7 12 12 C 1.55151 * 102.94393 * 337.80587 * 11 10 9 13 13 H 1.08999 * 111.00701 * 277.38752 * 12 11 10 14 14 N 1.46500 * 111.00396 * 153.57861 * 12 11 10 15 15 C 1.34777 * 120.00076 * 155.00318 * 14 12 11 16 16 O 1.21587 * 119.99978 * 359.97438 * 15 14 12 17 17 C 1.47550 * 120.00373 * 180.02562 * 15 14 12 18 18 C 1.38700 * 120.38473 * 354.01500 * 17 15 14 19 19 C 1.38966 * 120.53836 * 180.02562 * 18 17 15 20 20 C 1.36212 * 121.24077 * 0.02562 * 19 18 17 21 21 C 1.40709 * 120.19544 * 0.24879 * 20 19 18 22 22 N 1.33689 * 120.93488 * 180.33767 * 21 20 19 23 23 C 1.31062 * 121.34146 * 179.79313 * 22 21 20 24 24 C 1.39337 * 121.70613 * 359.63781 * 23 22 21 25 25 C 1.36675 * 119.87046 * 0.02734 * 24 23 22 26 26 C 1.40469 * 118.16852 * 359.97438 * 25 24 23 27 27 C 1.47420 * 125.65320 * 185.14215 * 9 7 2 28 28 H 0.96998 * 119.99786 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.88365 * 59.54481 * 10 9 7 30 30 H 1.08996 * 109.88063 * 298.37448 * 10 9 7 31 31 H 1.09008 * 110.72185 * 219.43974 * 11 10 9 32 32 H 1.09000 * 110.87168 * 96.24259 * 11 10 9 33 33 H 0.96998 * 120.00092 * 335.00193 * 14 12 11 34 34 H 1.08005 * 119.73072 * 0.02608 * 18 17 15 35 35 H 1.08001 * 119.38234 * 179.97438 * 19 18 17 36 36 H 1.07992 * 119.90112 * 179.97438 * 20 19 18 37 37 H 1.08004 * 119.14857 * 179.66533 * 23 22 21 38 38 H 1.08009 * 120.06737 * 180.02562 * 24 23 22 39 39 H 1.08006 * 120.91747 * 179.97438 * 25 24 23 40 40 H 1.08995 * 110.36898 * 85.26593 * 27 9 7 41 41 H 1.09000 * 110.36259 * 322.94275 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6034 1.9854 -1.3947 5 1 1.3988 2.6809 0.5917 6 1 3.4910 1.4730 0.8030 7 6 2.0103 -1.2021 -0.0005 8 1 3.0869 -1.2041 0.0847 9 7 1.3299 -2.3856 -0.1091 10 6 -0.1159 -2.5249 -0.3370 11 6 -0.4240 -4.0350 -0.4143 12 6 0.9493 -4.6511 -0.7905 13 1 1.1235 -4.5908 -1.8648 14 7 1.0498 -6.0356 -0.3221 15 6 1.8830 -6.8969 -0.9388 16 8 2.5510 -6.5250 -1.8842 17 6 1.9838 -8.2915 -0.4675 18 6 1.3208 -8.6929 0.6828 19 6 1.4140 -10.0054 1.1299 20 6 2.1541 -10.9300 0.4571 21 6 2.8484 -10.5665 -0.7115 22 7 3.5738 -11.4636 -1.3871 23 6 4.2203 -11.1347 -2.4786 24 6 4.1787 -9.8402 -2.9925 25 6 3.4496 -8.8771 -2.3530 26 6 2.7588 -9.2354 -1.1836 27 6 1.9257 -3.7309 -0.0162 28 1 -0.4850 0.8400 0.0004 29 1 -0.3916 -2.0418 -1.2743 30 1 -0.6664 -2.0761 0.4898 31 1 -1.1633 -4.2387 -1.1890 32 1 -0.7645 -4.4118 0.5502 33 1 0.5166 -6.3324 0.4319 34 1 0.7274 -7.9796 1.2355 35 1 0.8904 -10.2976 2.0282 36 1 2.2118 -11.9440 0.8242 37 1 4.8001 -11.8866 -2.9934 38 1 4.7215 -9.5983 -3.8944 39 1 3.4059 -7.8682 -2.7362 40 1 1.9961 -4.0435 1.0256 41 1 2.9100 -3.7429 -0.4842 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015452346.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:18 Heat of formation + Delta-G solvation = 35.229469 kcal Electronic energy + Delta-G solvation = -24621.128372 eV Core-core repulsion = 21079.963503 eV Total energy + Delta-G solvation = -3541.164869 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.11435 -40.69857 -38.95551 -37.91264 -35.76166 -34.33555 -33.86884 -31.56289 -31.51949 -30.75077 -28.80413 -26.60737 -25.58120 -24.48580 -24.26667 -22.25682 -21.88196 -21.57605 -19.39199 -19.01481 -18.47437 -17.86316 -17.40199 -17.12296 -16.67810 -16.22215 -15.97163 -15.81281 -15.59380 -15.20086 -14.83732 -14.66407 -14.22293 -14.11115 -14.02914 -13.78923 -13.68202 -13.05724 -12.97207 -12.79994 -12.71757 -12.45560 -12.31528 -12.15224 -12.05309 -11.83336 -11.56856 -11.51203 -11.27392 -10.74593 -10.33008 -10.19510 -9.82009 -9.32584 -8.92946 -7.87542 -5.25003 -0.89707 -0.19615 0.66831 1.44911 1.47490 1.55238 1.64359 1.95337 2.16184 2.48875 3.10239 3.30024 3.31376 3.45569 3.64683 3.74481 3.80879 3.83942 3.89401 4.02593 4.06751 4.16502 4.18928 4.42641 4.46396 4.57527 4.68764 4.77725 4.79402 4.85771 4.93384 5.00742 5.05133 5.20426 5.25044 5.32958 5.40967 5.48938 5.58505 5.63059 5.72635 5.79554 6.17642 6.46294 6.85179 7.07268 7.13517 7.72889 8.36115 9.21513 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.026579 B = 0.002788 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.197986 B =10039.263706 C =10623.899840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.061 4.061 3 Si 0.978 3.022 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.271 1.271 7 C -0.248 4.248 8 H 0.076 0.924 9 N -0.625 5.625 10 C 0.180 3.820 11 C -0.127 4.127 12 C 0.146 3.854 13 H 0.079 0.921 14 N -0.692 5.692 15 C 0.558 3.442 16 O -0.570 6.570 17 C -0.136 4.136 18 C -0.057 4.057 19 C -0.102 4.102 20 C -0.069 4.069 21 C 0.095 3.905 22 N -0.495 5.495 23 C 0.128 3.872 24 C -0.172 4.172 25 C -0.090 4.090 26 C -0.086 4.086 27 C 0.128 3.872 28 H 0.249 0.751 29 H 0.002 0.998 30 H 0.031 0.969 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.417 0.583 34 H 0.164 0.836 35 H 0.179 0.821 36 H 0.159 0.841 37 H 0.194 0.806 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.032 0.968 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 -25.146 0.945 25.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.254 4.254 3 Si 0.806 3.194 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.196 1.196 7 C -0.377 4.377 8 H 0.094 0.906 9 N -0.352 5.352 10 C 0.055 3.945 11 C -0.166 4.166 12 C 0.040 3.960 13 H 0.098 0.902 14 N -0.343 5.343 15 C 0.347 3.653 16 O -0.452 6.452 17 C -0.140 4.140 18 C -0.076 4.076 19 C -0.121 4.121 20 C -0.088 4.088 21 C -0.026 4.026 22 N -0.203 5.203 23 C -0.044 4.044 24 C -0.192 4.192 25 C -0.116 4.116 26 C -0.089 4.089 27 C 0.001 3.999 28 H 0.058 0.942 29 H 0.020 0.980 30 H 0.049 0.951 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.255 0.745 34 H 0.181 0.819 35 H 0.197 0.803 36 H 0.176 0.824 37 H 0.211 0.789 38 H 0.180 0.820 39 H 0.175 0.825 40 H 0.050 0.950 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.670 -25.498 0.724 25.563 hybrid contribution 0.295 2.184 -0.328 2.228 sum 1.965 -23.314 0.396 23.400 Atomic orbital electron populations 1.70138 1.06123 1.25508 1.57738 1.25629 0.96677 1.00886 1.02248 0.85106 0.77618 0.79028 0.77634 1.21332 1.21601 1.19566 1.19391 0.91089 0.83908 1.43317 0.90599 1.44660 1.04847 1.00684 1.84974 1.20988 0.84026 0.91549 0.97906 1.22999 0.95321 0.95104 1.03142 1.21854 0.96250 0.79547 0.98360 0.90237 1.45645 1.43586 1.09737 1.35354 1.18516 0.79024 0.85647 0.82123 1.90571 1.45605 1.79026 1.29988 1.19795 1.03094 0.92020 0.99099 1.21891 0.94948 0.97873 0.92863 1.21270 0.98280 0.91486 1.01105 1.21358 0.93861 1.01809 0.91776 1.19229 0.97725 0.88737 0.96918 1.68102 1.08332 1.35326 1.08572 1.23578 0.93957 0.95866 0.91000 1.22368 1.00364 0.94055 1.02413 1.22648 0.93082 1.02497 0.93361 1.18849 0.98831 0.94482 0.96733 1.21924 0.95423 0.85292 0.97219 0.94155 0.97954 0.95090 0.89182 0.88721 0.74452 0.81880 0.80344 0.82389 0.78886 0.81974 0.82491 0.95046 0.95620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.55 10.41 21.65 0.23 -56.33 16 2 C -0.06 -3.50 5.46 84.86 0.46 -3.03 16 3 Si 0.98 46.21 29.56 68.60 2.03 48.24 16 4 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.25 -14.26 10.27 84.03 0.86 -13.40 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.62 -32.60 3.39 -692.01 -2.35 -34.94 16 10 C 0.18 8.65 5.40 86.73 0.47 9.12 16 11 C -0.13 -4.19 6.60 31.78 0.21 -3.98 16 12 C 0.15 5.01 3.42 46.38 0.16 5.17 16 13 H 0.08 3.10 7.54 -2.39 -0.02 3.08 16 14 N -0.69 -17.89 5.15 -439.11 -2.26 -20.15 16 15 C 0.56 16.28 7.73 86.70 0.67 16.95 16 16 O -0.57 -20.98 13.05 -3.99 -0.05 -21.03 16 17 C -0.14 -3.25 5.90 -19.89 -0.12 -3.36 16 18 C -0.06 -0.87 9.51 22.55 0.21 -0.66 16 19 C -0.10 -1.22 9.92 21.97 0.22 -1.00 16 20 C -0.07 -1.13 9.96 22.40 0.22 -0.90 16 21 C 0.09 2.19 6.60 40.27 0.27 2.46 16 22 N -0.49 -11.16 10.34 -188.68 -1.95 -13.11 16 23 C 0.13 2.34 11.15 85.07 0.95 3.29 16 24 C -0.17 -3.45 10.03 22.17 0.22 -3.22 16 25 C -0.09 -2.41 9.29 22.45 0.21 -2.20 16 26 C -0.09 -2.25 5.76 -21.10 -0.12 -2.37 16 27 C 0.13 5.44 6.93 86.86 0.60 6.04 16 28 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.00 0.12 7.80 -2.39 -0.02 0.10 16 30 H 0.03 1.65 7.10 -2.39 -0.02 1.63 16 31 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 32 H 0.09 2.56 8.00 -2.39 -0.02 2.54 16 33 H 0.42 7.44 6.64 -92.71 -0.62 6.82 16 34 H 0.16 1.43 6.43 -2.91 -0.02 1.41 16 35 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16 36 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.19 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 39 H 0.16 4.86 4.96 -3.18 -0.02 4.85 16 40 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -77.09 338.43 1.59 -75.50 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.45 Total: 12.92 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 5.50 Total: 8.91 kcal Atomic # 7 Polarization: -118.20 SS G_CDS: -6.33 Total: -124.54 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.05 Total: -21.03 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -77.09 1.59 -75.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015452346.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.728 kcal (2) G-P(sol) polarization free energy of solvation -77.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds