Wall clock time and date at job start Fri Apr 10 2020 22:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00430 * 2 1 4 4 H 1.48500 * 109.47215 * 239.99988 * 3 2 1 5 5 H 1.48499 * 109.46948 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47149 * 119.99845 * 3 2 1 7 7 C 1.38815 * 119.99306 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99675 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00468 * 0.02562 * 7 2 1 10 10 C 1.47023 * 125.64568 * 359.97176 * 9 7 2 11 11 C 1.54325 * 107.27004 * 178.96211 * 10 9 7 12 12 C 1.55161 * 102.94425 * 337.80961 * 11 10 9 13 13 H 1.08996 * 111.00296 * 277.39039 * 12 11 10 14 14 N 1.46499 * 111.00303 * 153.57485 * 12 11 10 15 15 C 1.34783 * 119.99405 * 155.00306 * 14 12 11 16 16 O 1.21534 * 120.00093 * 359.97438 * 15 14 12 17 17 C 1.47949 * 119.99310 * 180.02562 * 15 14 12 18 18 N 1.32197 * 120.16238 * 354.43499 * 17 15 14 19 19 C 1.32026 * 122.68262 * 179.97438 * 18 17 15 20 20 C 1.36684 * 122.02756 * 359.73977 * 19 18 17 21 21 C 1.40535 * 118.84770 * 0.51093 * 20 19 18 22 22 C 1.40322 * 122.21917 * 179.78038 * 21 20 19 23 23 C 1.36198 * 119.45371 * 179.69965 * 22 21 20 24 24 C 1.39384 * 121.00020 * 0.04504 * 23 22 21 25 25 C 1.36262 * 121.08189 * 359.95774 * 24 23 22 26 26 C 1.40091 * 119.53834 * 0.02562 * 25 24 23 27 27 C 1.47426 * 125.64890 * 179.97438 * 9 7 2 28 28 H 0.96998 * 119.99662 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.88149 * 59.54877 * 10 9 7 30 30 H 1.08993 * 109.88745 * 298.38116 * 10 9 7 31 31 H 1.09003 * 110.72391 * 219.44943 * 11 10 9 32 32 H 1.09001 * 110.87285 * 96.24347 * 11 10 9 33 33 H 0.96992 * 120.00140 * 334.99991 * 14 12 11 34 34 H 1.08003 * 118.98385 * 180.02562 * 19 18 17 35 35 H 1.08000 * 120.57286 * 180.02562 * 20 19 18 36 36 H 1.08001 * 120.27060 * 359.70281 * 22 21 20 37 37 H 1.08003 * 119.49878 * 180.02562 * 23 22 21 38 38 H 1.08001 * 119.45972 * 179.97438 * 24 23 22 39 39 H 1.08004 * 120.22532 * 180.02562 * 25 24 23 40 40 H 1.09003 * 110.36248 * 85.27059 * 27 9 7 41 41 H 1.08991 * 110.36596 * 322.94479 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1377 -2.5327 0.0006 11 6 -0.4487 -4.0440 -0.0261 12 6 0.8516 -4.6562 -0.6108 13 1 0.8563 -4.5970 -1.6991 14 7 1.0287 -6.0395 -0.1621 15 6 1.7589 -6.8990 -0.9001 16 8 2.2701 -6.5266 -1.9379 17 6 1.9372 -8.2962 -0.4472 18 7 1.4759 -8.6762 0.7319 19 6 1.6069 -9.9094 1.1850 20 6 2.2285 -10.8863 0.4587 21 6 2.7525 -10.5624 -0.8044 22 6 3.4079 -11.5083 -1.6074 23 6 3.8889 -11.1345 -2.8256 24 6 3.7406 -9.8271 -3.2855 25 6 3.1096 -8.8835 -2.5318 26 6 2.6015 -9.2311 -1.2734 27 6 1.9333 -3.7312 0.0005 28 1 -0.4849 0.8401 -0.0004 29 1 -0.5577 -2.0521 -0.8830 30 1 -0.5545 -2.0843 0.9024 31 1 -1.2987 -4.2515 -0.6762 32 1 -0.6336 -4.4203 0.9800 33 1 0.6204 -6.3368 0.6660 34 1 1.2067 -10.1548 2.1576 35 1 2.3223 -11.8877 0.8521 36 1 3.5299 -12.5244 -1.2623 37 1 4.3931 -11.8620 -3.4444 38 1 4.1320 -9.5576 -4.2554 39 1 3.0021 -7.8746 -2.9019 40 1 2.1664 -4.0420 1.0190 41 1 2.8326 -3.7406 -0.6152 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015629406.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:29 Heat of formation + Delta-G solvation = 56.752385 kcal Electronic energy + Delta-G solvation = -24614.373471 eV Core-core repulsion = 21074.141906 eV Total energy + Delta-G solvation = -3540.231565 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.30189 -39.33998 -37.60039 -37.23017 -34.09256 -33.18757 -31.88692 -31.38346 -29.99106 -29.08687 -27.22696 -25.28591 -24.27559 -23.75271 -22.92848 -21.00297 -20.31795 -19.96620 -18.39021 -17.64456 -17.34054 -16.79968 -16.08395 -15.97547 -15.24159 -14.96152 -14.66802 -14.49888 -14.21011 -13.97145 -13.83011 -13.56816 -13.17210 -12.77138 -12.39972 -12.38779 -12.19225 -12.05055 -11.79231 -11.65839 -11.00964 -10.88691 -10.73105 -10.40645 -10.32428 -10.13645 -10.09062 -9.87339 -9.69804 -9.45779 -9.37406 -8.79524 -8.57212 -8.30336 -6.81677 -5.68865 -3.02344 -0.15564 0.63566 1.51450 2.53475 3.10412 3.12854 3.44112 3.47894 3.49355 3.90425 3.99108 4.30097 4.49115 4.52536 4.57042 4.63690 4.86083 4.96546 5.06155 5.18748 5.30254 5.44638 5.47403 5.55863 5.64212 5.75930 5.78263 5.81336 5.85524 6.10729 6.17084 6.26490 6.34209 6.39332 6.45473 6.56438 6.68109 6.71447 6.97604 7.43542 7.56539 7.60423 7.74363 7.84207 8.25732 8.30942 9.24278 9.84074 10.49154 11.43032 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.026539 B = 0.002798 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.781366 B =10005.969753 C =10573.721035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.180 3.820 11 C -0.149 4.149 12 C 0.123 3.877 13 H 0.100 0.900 14 N -0.689 5.689 15 C 0.570 3.430 16 O -0.529 6.529 17 C 0.131 3.869 18 N -0.458 5.458 19 C 0.074 3.926 20 C -0.136 4.136 21 C -0.031 4.031 22 C -0.123 4.123 23 C -0.093 4.093 24 C -0.125 4.125 25 C -0.088 4.088 26 C -0.073 4.073 27 C 0.130 3.870 28 H 0.253 0.747 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.409 0.591 34 H 0.160 0.840 35 H 0.141 0.859 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.175 0.825 40 H 0.021 0.979 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.060 -25.691 -1.328 25.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.055 3.945 11 C -0.188 4.188 12 C 0.019 3.981 13 H 0.118 0.882 14 N -0.338 5.338 15 C 0.354 3.646 16 O -0.406 6.406 17 C -0.021 4.021 18 N -0.169 5.169 19 C -0.071 4.071 20 C -0.155 4.155 21 C -0.036 4.036 22 C -0.140 4.140 23 C -0.112 4.112 24 C -0.143 4.143 25 C -0.106 4.106 26 C -0.076 4.076 27 C 0.002 3.998 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.245 0.755 34 H 0.178 0.822 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.192 0.808 40 H 0.039 0.961 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.897 -24.604 -1.449 24.816 hybrid contribution 0.690 -0.112 0.076 0.703 sum 3.587 -24.716 -1.373 25.012 Atomic orbital electron populations 1.69938 1.04868 1.25179 1.57162 1.24802 0.95753 0.97664 1.02240 0.86169 0.78429 0.83070 0.77924 1.21127 1.21600 1.21185 1.19029 0.90478 0.82265 1.43748 0.90421 1.44380 1.01640 0.99742 1.87273 1.21151 0.84491 0.87379 1.01520 1.23197 0.95728 0.99958 0.99939 1.22439 0.97275 0.78213 1.00219 0.88196 1.45901 1.50884 1.11172 1.25844 1.17734 0.79342 0.83610 0.83915 1.90593 1.48941 1.77209 1.23846 1.21490 0.95622 0.94388 0.90624 1.67284 1.16601 1.19672 1.13364 1.22195 0.97226 0.87635 1.00094 1.22129 0.98165 1.01181 0.94073 1.18204 0.97535 0.93052 0.94787 1.20906 0.99495 0.98854 0.94791 1.21085 0.97773 0.96558 0.95793 1.21143 0.99547 0.93052 1.00599 1.22256 0.93572 1.02745 0.92068 1.18718 0.99683 0.92988 0.96221 1.21818 0.94717 0.86120 0.97130 0.93685 0.93179 0.93514 0.91517 0.91861 0.75505 0.82243 0.84074 0.85076 0.85571 0.85331 0.80799 0.96120 0.93790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.28 10.31 55.49 0.57 -26.71 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.23 -6.47 10.28 -15.06 -0.15 -6.62 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -15.77 3.39 -170.08 -0.58 -16.34 16 10 C 0.18 4.35 5.37 -3.06 -0.02 4.33 16 11 C -0.15 -2.74 6.60 -24.89 -0.16 -2.90 16 12 C 0.12 2.28 3.42 -65.79 -0.23 2.06 16 13 H 0.10 1.98 7.54 -51.93 -0.39 1.59 16 14 N -0.69 -10.80 5.19 -52.64 -0.27 -11.07 16 15 C 0.57 9.17 7.78 -12.28 -0.10 9.07 16 16 O -0.53 -9.58 13.08 5.34 0.07 -9.51 16 17 C 0.13 1.84 6.81 -82.55 -0.56 1.28 16 18 N -0.46 -5.77 9.52 -9.81 -0.09 -5.86 16 19 C 0.07 0.71 11.06 -18.03 -0.20 0.52 16 20 C -0.14 -1.16 9.88 -39.28 -0.39 -1.55 16 21 C -0.03 -0.32 5.75 -106.83 -0.61 -0.94 16 22 C -0.12 -1.03 9.82 -39.53 -0.39 -1.41 16 23 C -0.09 -0.76 9.95 -39.89 -0.40 -1.16 16 24 C -0.13 -1.23 9.95 -39.87 -0.40 -1.63 16 25 C -0.09 -1.11 9.23 -39.60 -0.37 -1.47 16 26 C -0.07 -0.96 5.76 -106.60 -0.61 -1.57 16 27 C 0.13 2.84 6.93 -2.54 -0.02 2.82 16 28 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.05 1.33 7.38 -51.93 -0.38 0.95 16 30 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.05 8.00 -51.93 -0.42 0.64 16 33 H 0.41 5.70 7.93 -40.82 -0.32 5.38 16 34 H 0.16 1.02 8.06 -52.48 -0.42 0.60 16 35 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 37 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 38 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.18 2.49 4.96 -52.49 -0.26 2.23 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 340.61 15.07 5.13 5.13 Total: -1.00 -32.67 340.61 -9.98 -42.65 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.09 Total: 3.85 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -4.69 Total: 0.47 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: -0.37 Total: -59.99 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.07 Total: -9.51 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.67 -9.98 -42.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015629406.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.400 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds