Wall clock time and date at job start Fri Apr 10 2020 22:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00430 * 2 1 4 4 H 1.48500 * 109.47215 * 239.99988 * 3 2 1 5 5 H 1.48499 * 109.46948 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47149 * 119.99845 * 3 2 1 7 7 C 1.38815 * 119.99306 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99675 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00468 * 0.02562 * 7 2 1 10 10 C 1.47023 * 125.64568 * 359.97176 * 9 7 2 11 11 C 1.54325 * 107.27004 * 178.96211 * 10 9 7 12 12 C 1.55161 * 102.94425 * 337.80961 * 11 10 9 13 13 H 1.08996 * 111.00296 * 277.39039 * 12 11 10 14 14 N 1.46499 * 111.00303 * 153.57485 * 12 11 10 15 15 C 1.34783 * 119.99405 * 155.00306 * 14 12 11 16 16 O 1.21534 * 120.00093 * 359.97438 * 15 14 12 17 17 C 1.47949 * 119.99310 * 180.02562 * 15 14 12 18 18 N 1.32197 * 120.16238 * 354.43499 * 17 15 14 19 19 C 1.32026 * 122.68262 * 179.97438 * 18 17 15 20 20 C 1.36684 * 122.02756 * 359.73977 * 19 18 17 21 21 C 1.40535 * 118.84770 * 0.51093 * 20 19 18 22 22 C 1.40322 * 122.21917 * 179.78038 * 21 20 19 23 23 C 1.36198 * 119.45371 * 179.69965 * 22 21 20 24 24 C 1.39384 * 121.00020 * 0.04504 * 23 22 21 25 25 C 1.36262 * 121.08189 * 359.95774 * 24 23 22 26 26 C 1.40091 * 119.53834 * 0.02562 * 25 24 23 27 27 C 1.47426 * 125.64890 * 179.97438 * 9 7 2 28 28 H 0.96998 * 119.99662 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.88149 * 59.54877 * 10 9 7 30 30 H 1.08993 * 109.88745 * 298.38116 * 10 9 7 31 31 H 1.09003 * 110.72391 * 219.44943 * 11 10 9 32 32 H 1.09001 * 110.87285 * 96.24347 * 11 10 9 33 33 H 0.96992 * 120.00140 * 334.99991 * 14 12 11 34 34 H 1.08003 * 118.98385 * 180.02562 * 19 18 17 35 35 H 1.08000 * 120.57286 * 180.02562 * 20 19 18 36 36 H 1.08001 * 120.27060 * 359.70281 * 22 21 20 37 37 H 1.08003 * 119.49878 * 180.02562 * 23 22 21 38 38 H 1.08001 * 119.45972 * 179.97438 * 24 23 22 39 39 H 1.08004 * 120.22532 * 180.02562 * 25 24 23 40 40 H 1.09003 * 110.36248 * 85.27059 * 27 9 7 41 41 H 1.08991 * 110.36596 * 322.94479 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1377 -2.5327 0.0006 11 6 -0.4487 -4.0440 -0.0261 12 6 0.8516 -4.6562 -0.6108 13 1 0.8563 -4.5970 -1.6991 14 7 1.0287 -6.0395 -0.1621 15 6 1.7589 -6.8990 -0.9001 16 8 2.2701 -6.5266 -1.9379 17 6 1.9372 -8.2962 -0.4472 18 7 1.4759 -8.6762 0.7319 19 6 1.6069 -9.9094 1.1850 20 6 2.2285 -10.8863 0.4587 21 6 2.7525 -10.5624 -0.8044 22 6 3.4079 -11.5083 -1.6074 23 6 3.8889 -11.1345 -2.8256 24 6 3.7406 -9.8271 -3.2855 25 6 3.1096 -8.8835 -2.5318 26 6 2.6015 -9.2311 -1.2734 27 6 1.9333 -3.7312 0.0005 28 1 -0.4849 0.8401 -0.0004 29 1 -0.5577 -2.0521 -0.8830 30 1 -0.5545 -2.0843 0.9024 31 1 -1.2987 -4.2515 -0.6762 32 1 -0.6336 -4.4203 0.9800 33 1 0.6204 -6.3368 0.6660 34 1 1.2067 -10.1548 2.1576 35 1 2.3223 -11.8877 0.8521 36 1 3.5299 -12.5244 -1.2623 37 1 4.3931 -11.8620 -3.4444 38 1 4.1320 -9.5576 -4.2554 39 1 3.0021 -7.8746 -2.9019 40 1 2.1664 -4.0420 1.0190 41 1 2.8326 -3.7406 -0.6152 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015629406.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:27 Heat of formation + Delta-G solvation = 35.551502 kcal Electronic energy + Delta-G solvation = -24615.292811 eV Core-core repulsion = 21074.141906 eV Total energy + Delta-G solvation = -3541.150905 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -42.17541 -40.58764 -38.90708 -38.36448 -35.71086 -34.09677 -33.67028 -32.16264 -31.19996 -30.59541 -28.90956 -26.76140 -25.74712 -24.50239 -23.84802 -22.34547 -21.92478 -21.63211 -19.42733 -18.93361 -18.38952 -18.08722 -17.47897 -16.77473 -16.70427 -16.35988 -16.01587 -15.87841 -15.47954 -15.04741 -14.81187 -14.66737 -14.30972 -14.14326 -13.95175 -13.85867 -13.71356 -13.14397 -12.97566 -12.77480 -12.71943 -12.51139 -12.41817 -12.09866 -12.08541 -11.82158 -11.62051 -11.19262 -11.09043 -10.72455 -10.50668 -10.20838 -10.12448 -9.06525 -8.93886 -7.87214 -5.23859 -0.98066 -0.11440 0.69747 1.45030 1.49009 1.55200 1.60289 1.90436 2.20518 2.49196 3.03966 3.08817 3.31152 3.58938 3.64802 3.67060 3.81611 3.84120 3.91853 4.01540 4.15812 4.21582 4.29051 4.42673 4.47935 4.56724 4.68285 4.74167 4.82921 4.83754 4.94107 4.99940 5.10650 5.15525 5.39939 5.41057 5.43352 5.56072 5.61704 5.65039 5.71665 5.91332 6.16705 6.35029 6.76754 7.06941 7.09317 7.72517 8.36535 9.22869 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.026539 B = 0.002798 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.781366 B =10005.969753 C =10573.721035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.062 4.062 3 Si 0.982 3.018 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.078 0.922 9 N -0.625 5.625 10 C 0.186 3.814 11 C -0.129 4.129 12 C 0.143 3.857 13 H 0.084 0.916 14 N -0.682 5.682 15 C 0.568 3.432 16 O -0.559 6.559 17 C 0.092 3.908 18 N -0.464 5.464 19 C 0.054 3.946 20 C -0.105 4.105 21 C -0.053 4.053 22 C -0.107 4.107 23 C -0.100 4.100 24 C -0.114 4.114 25 C -0.131 4.131 26 C -0.087 4.087 27 C 0.130 3.870 28 H 0.249 0.751 29 H 0.017 0.983 30 H 0.018 0.982 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.419 0.581 34 H 0.194 0.806 35 H 0.188 0.812 36 H 0.172 0.828 37 H 0.162 0.838 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.028 0.972 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.827 -29.600 -0.480 29.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.255 4.255 3 Si 0.809 3.191 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.378 4.378 8 H 0.096 0.904 9 N -0.352 5.352 10 C 0.061 3.939 11 C -0.167 4.167 12 C 0.037 3.963 13 H 0.102 0.898 14 N -0.332 5.332 15 C 0.354 3.646 16 O -0.437 6.437 17 C -0.058 4.058 18 N -0.176 5.176 19 C -0.092 4.092 20 C -0.124 4.124 21 C -0.058 4.058 22 C -0.125 4.125 23 C -0.119 4.119 24 C -0.132 4.132 25 C -0.150 4.150 26 C -0.090 4.090 27 C 0.003 3.997 28 H 0.059 0.941 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.257 0.743 34 H 0.211 0.789 35 H 0.205 0.795 36 H 0.189 0.811 37 H 0.180 0.820 38 H 0.161 0.839 39 H 0.163 0.837 40 H 0.046 0.954 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.672 -28.546 -0.595 28.788 hybrid contribution 0.530 0.901 -0.190 1.063 sum 4.202 -27.645 -0.785 27.974 Atomic orbital electron populations 1.70153 1.06175 1.25589 1.57806 1.25668 0.96737 1.00973 1.02172 0.85113 0.77184 0.78575 0.78208 1.20448 1.21566 1.20218 1.19395 0.90930 0.83692 1.43821 0.90430 1.44662 1.02671 1.00626 1.87215 1.20935 0.83429 0.91031 0.98532 1.23013 0.96219 0.95460 1.02049 1.21939 0.95925 0.79370 0.99033 0.89783 1.45670 1.51409 1.09763 1.26379 1.18192 0.78345 0.84738 0.83329 1.90592 1.49900 1.78147 1.25106 1.21035 0.99210 0.93290 0.92273 1.67197 1.16186 1.21574 1.12632 1.22827 0.97956 0.86817 1.01645 1.22656 0.94596 1.02760 0.92377 1.18598 0.98657 0.92332 0.96261 1.21407 0.97061 0.99968 0.94048 1.21472 0.97828 0.96125 0.96458 1.21441 0.97528 0.93566 1.00648 1.22054 0.97047 1.02479 0.93453 1.18890 0.99659 0.94280 0.96174 1.21897 0.95171 0.85318 0.97338 0.94133 0.96487 0.96359 0.89102 0.89348 0.74290 0.78931 0.79504 0.81058 0.82020 0.83851 0.83707 0.95433 0.95276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.99 10.31 21.65 0.22 -57.76 16 2 C -0.06 -3.65 5.49 84.86 0.47 -3.19 16 3 Si 0.98 47.05 29.55 68.60 2.03 49.08 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 7 C -0.25 -14.72 10.28 84.03 0.86 -13.86 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.62 -33.98 3.39 -692.03 -2.35 -36.33 16 10 C 0.19 9.37 5.37 86.73 0.47 9.84 16 11 C -0.13 -4.73 6.60 31.78 0.21 -4.52 16 12 C 0.14 5.46 3.42 46.38 0.16 5.62 16 13 H 0.08 3.50 7.54 -2.39 -0.02 3.48 16 14 N -0.68 -21.84 5.19 -438.75 -2.28 -24.12 16 15 C 0.57 19.20 7.78 86.82 0.68 19.88 16 16 O -0.56 -21.88 13.08 -3.82 -0.05 -21.93 16 17 C 0.09 2.64 6.81 42.43 0.29 2.93 16 18 N -0.46 -11.23 9.52 -184.95 -1.76 -12.99 16 19 C 0.05 0.88 11.06 84.30 0.93 1.81 16 20 C -0.10 -1.34 9.88 22.47 0.22 -1.12 16 21 C -0.05 -0.97 5.75 -21.29 -0.12 -1.10 16 22 C -0.11 -1.33 9.82 22.30 0.22 -1.11 16 23 C -0.10 -1.29 9.95 22.07 0.22 -1.07 16 24 C -0.11 -2.14 9.95 22.09 0.22 -1.92 16 25 C -0.13 -3.47 9.23 22.26 0.21 -3.27 16 26 C -0.09 -2.27 5.76 -21.14 -0.12 -2.39 16 27 C 0.13 5.89 6.93 86.85 0.60 6.49 16 28 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 29 H 0.02 0.95 7.38 -2.39 -0.02 0.93 16 30 H 0.02 1.01 7.51 -2.39 -0.02 0.99 16 31 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.09 2.83 8.00 -2.39 -0.02 2.81 16 33 H 0.42 11.58 7.93 -92.71 -0.74 10.84 16 34 H 0.19 1.68 8.06 -2.91 -0.02 1.65 16 35 H 0.19 0.65 8.06 -2.91 -0.02 0.62 16 36 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 37 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 38 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.15 4.63 4.96 -3.01 -0.01 4.61 16 40 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -76.51 340.61 1.65 -74.86 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.33 Total: 16.15 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 5.50 Total: 13.03 kcal Atomic # 7 Polarization: -125.04 SS G_CDS: -6.16 Total: -131.20 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.05 Total: -21.93 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -76.51 1.65 -74.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015629406.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.416 kcal (2) G-P(sol) polarization free energy of solvation -76.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds