Wall clock time and date at job start Fri Apr 10 2020 22:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99607 * 2 1 4 4 H 1.48498 * 109.47398 * 90.00272 * 3 2 1 5 5 H 1.48504 * 109.46962 * 209.99792 * 3 2 1 6 6 H 1.48500 * 109.47439 * 329.99656 * 3 2 1 7 7 C 1.38807 * 120.00452 * 180.27372 * 2 1 3 8 8 H 1.08012 * 119.99629 * 24.23846 * 7 2 1 9 9 N 1.36934 * 120.00605 * 204.24780 * 7 2 1 10 10 C 1.47424 * 125.64535 * 12.90828 * 9 7 2 11 11 C 1.55130 * 104.72156 * 155.82192 * 10 9 7 12 12 C 1.55156 * 101.48324 * 37.29713 * 11 10 9 13 13 H 1.09000 * 110.71946 * 205.96858 * 12 11 10 14 14 N 1.46499 * 110.71794 * 82.69757 * 12 11 10 15 15 C 1.34781 * 120.00151 * 160.02588 * 14 12 11 16 16 O 1.21563 * 119.99667 * 359.97438 * 15 14 12 17 17 C 1.47762 * 120.00328 * 179.97438 * 15 14 12 18 18 C 1.40633 * 119.80362 * 359.72628 * 17 15 14 19 19 C 1.35701 * 120.92110 * 179.77599 * 18 17 15 20 20 C 1.40759 * 120.11162 * 0.46967 * 19 18 17 21 21 N 1.33655 * 120.82918 * 179.78741 * 20 19 18 22 22 C 1.31117 * 121.39002 * 180.02562 * 21 20 19 23 23 C 1.39316 * 121.77311 * 359.97438 * 22 21 20 24 24 C 1.36582 * 119.90487 * 0.02562 * 23 22 21 25 25 C 1.40893 * 118.15562 * 359.97438 * 24 23 22 26 26 C 1.38545 * 119.80659 * 179.97438 * 17 15 14 27 27 C 1.47017 * 125.65134 * 193.22791 * 9 7 2 28 28 H 0.96996 * 119.99877 * 174.58278 * 1 2 3 29 29 H 1.08997 * 110.36983 * 274.75246 * 10 9 7 30 30 H 1.09000 * 110.36477 * 37.07515 * 10 9 7 31 31 H 1.08998 * 111.19284 * 279.19252 * 11 10 9 32 32 H 1.08999 * 110.93901 * 155.29312 * 11 10 9 33 33 H 0.97003 * 120.00177 * 340.02351 * 14 12 11 34 34 H 1.08000 * 119.53752 * 359.97438 * 18 17 15 35 35 H 1.07997 * 119.94597 * 180.25887 * 19 18 17 36 36 H 1.07999 * 119.11397 * 180.02562 * 22 21 20 37 37 H 1.07997 * 120.04953 * 180.02562 * 23 22 21 38 38 H 1.07994 * 120.92298 * 179.97438 * 24 23 22 39 39 H 1.08001 * 120.30138 * 0.02562 * 26 17 15 40 40 H 1.09001 * 109.88097 * 300.43160 * 27 9 7 41 41 H 1.09002 * 109.88666 * 61.59761 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5477 1.4403 -0.7000 6 1 1.4475 2.6527 -0.7001 7 6 2.0103 -1.2020 -0.0057 8 1 1.5417 -2.0944 -0.3940 9 7 3.2890 -1.2567 0.4810 10 6 3.9516 -0.2063 1.2754 11 6 5.0527 -0.9518 2.0743 12 6 5.5318 -2.0001 1.0356 13 1 5.9522 -2.8732 1.5347 14 7 6.5053 -1.4092 0.1141 15 6 7.3358 -2.2040 -0.5895 16 8 7.2773 -3.4112 -0.4591 17 6 8.3174 -1.6081 -1.5195 18 6 8.3776 -0.2113 -1.6715 19 6 9.2731 0.3603 -2.5157 20 6 10.1531 -0.4453 -3.2628 21 7 11.0379 0.1023 -4.1016 22 6 11.8623 -0.6376 -4.8031 23 6 11.8598 -2.0277 -4.7111 24 6 10.9812 -2.6530 -3.8730 25 6 10.0969 -1.8546 -3.1208 26 6 9.1695 -2.4289 -2.2403 27 6 4.2309 -2.3697 0.2923 28 1 -0.4850 -0.8363 -0.0793 29 1 4.3964 0.5418 0.6193 30 1 3.2396 0.2602 1.9563 31 1 4.6380 -1.4379 2.9574 32 1 5.8618 -0.2745 2.3475 33 1 6.5522 -0.4459 0.0102 34 1 7.7038 0.4153 -1.1061 35 1 9.3085 1.4349 -2.6172 36 1 12.5627 -0.1564 -5.4696 37 1 12.5515 -2.6100 -5.3017 38 1 10.9647 -3.7296 -3.7891 39 1 9.1191 -3.5017 -2.1257 40 1 3.8119 -3.2848 0.7110 41 1 4.4364 -2.5056 -0.7695 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015647422.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:37 Heat of formation + Delta-G solvation = 51.465104 kcal Electronic energy + Delta-G solvation = -24668.457504 eV Core-core repulsion = 21127.996665 eV Total energy + Delta-G solvation = -3540.460839 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.19600 -39.85787 -37.80007 -36.78628 -34.16061 -33.77051 -32.22659 -30.97538 -30.36283 -29.38998 -28.02141 -25.19496 -24.16946 -23.81743 -22.46974 -21.43192 -20.91041 -19.87674 -18.65113 -18.06214 -17.42135 -17.18088 -16.16006 -15.99347 -15.29984 -14.92566 -14.85674 -14.46198 -14.41546 -14.29536 -13.89870 -13.71712 -13.42929 -13.40513 -13.12733 -12.39601 -12.17902 -12.09983 -11.83476 -11.75865 -11.26337 -11.16624 -11.04432 -10.93783 -10.89913 -10.10374 -9.93726 -9.85280 -9.61565 -9.26224 -9.17756 -8.92916 -8.57682 -8.51345 -7.08576 -6.32245 -3.20651 -0.07341 0.35042 1.60246 2.20052 3.13202 3.22919 3.36665 3.47453 3.63470 3.82699 3.90899 4.24338 4.33915 4.48435 4.56371 4.57414 4.69767 4.80258 4.83474 4.98005 5.01399 5.12332 5.29182 5.41728 5.42099 5.55806 5.56172 5.61464 5.69400 5.85016 5.92532 5.96544 6.01552 6.11861 6.14848 6.24555 6.42450 6.48280 6.57555 6.65908 6.85479 7.53579 7.54540 7.72489 8.22529 8.34495 9.04107 9.58255 10.25385 11.15798 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.020431 B = 0.003215 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.153271 B = 8706.170638 C = 9352.965052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.022 4.022 3 Si 1.067 2.933 4 H -0.294 1.294 5 H -0.288 1.288 6 H -0.299 1.299 7 C -0.326 4.326 8 H 0.075 0.925 9 N -0.607 5.607 10 C 0.102 3.898 11 C -0.138 4.138 12 C 0.131 3.869 13 H 0.096 0.904 14 N -0.707 5.707 15 C 0.558 3.442 16 O -0.538 6.538 17 C -0.128 4.128 18 C -0.073 4.073 19 C -0.097 4.097 20 C 0.142 3.858 21 N -0.478 5.478 22 C 0.138 3.862 23 C -0.182 4.182 24 C -0.045 4.045 25 C -0.114 4.114 26 C -0.027 4.027 27 C 0.126 3.874 28 H 0.263 0.737 29 H 0.028 0.972 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.399 0.601 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.161 0.839 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.038 0.962 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.873 -1.580 -5.006 26.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.223 4.223 3 Si 0.900 3.100 4 H -0.222 1.222 5 H -0.215 1.215 6 H -0.227 1.227 7 C -0.453 4.453 8 H 0.093 0.907 9 N -0.335 5.335 10 C -0.023 4.023 11 C -0.177 4.177 12 C 0.026 3.974 13 H 0.114 0.886 14 N -0.358 5.358 15 C 0.345 3.655 16 O -0.417 6.417 17 C -0.131 4.131 18 C -0.093 4.093 19 C -0.116 4.116 20 C 0.021 3.979 21 N -0.185 5.185 22 C -0.034 4.034 23 C -0.202 4.202 24 C -0.071 4.071 25 C -0.116 4.116 26 C -0.047 4.047 27 C 0.000 4.000 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.235 0.765 34 H 0.153 0.847 35 H 0.160 0.840 36 H 0.178 0.822 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.056 0.944 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 25.432 0.117 -4.864 25.893 hybrid contribution 0.152 -2.097 -0.261 2.119 sum 25.584 -1.981 -5.125 26.167 Atomic orbital electron populations 1.70894 1.05798 1.30019 1.49633 1.25888 0.96452 1.00838 0.99082 0.83805 0.74183 0.75947 0.76103 1.22156 1.21549 1.22692 1.20047 0.87127 0.96724 1.41411 0.90748 1.44820 1.11700 1.16224 1.60752 1.22089 0.94062 0.92538 0.93612 1.23101 0.98825 0.97931 0.97817 1.22033 0.88660 0.96758 0.89904 0.88606 1.45928 1.36135 1.10247 1.43468 1.18114 0.80545 0.86612 0.80207 1.90769 1.70983 1.13951 1.65958 1.20016 0.98934 0.93862 1.00257 1.21017 0.97412 0.93636 0.97280 1.20689 0.94571 1.00492 0.95799 1.19013 0.94346 0.90106 0.94463 1.68083 1.04511 1.39760 1.06188 1.23047 0.94686 0.90946 0.94761 1.21907 1.01013 0.96301 1.00982 1.21582 0.92318 1.00485 0.92734 1.18814 0.98794 0.94300 0.99695 1.21445 0.91135 1.00674 0.91415 1.21727 0.88258 0.92377 0.97663 0.92702 0.95417 0.91871 0.89487 0.90864 0.76505 0.84711 0.84005 0.82229 0.84273 0.83981 0.83611 0.94380 0.95025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.96 13.70 55.49 0.76 -28.20 16 2 C -0.02 -0.66 5.42 -17.43 -0.09 -0.75 16 3 Si 1.07 26.21 24.69 -169.99 -4.20 22.02 16 4 H -0.29 -6.73 6.63 56.52 0.37 -6.36 16 5 H -0.29 -6.59 6.20 56.52 0.35 -6.24 16 6 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 7 C -0.33 -9.38 10.44 -15.06 -0.16 -9.54 16 8 H 0.07 2.29 8.06 -52.48 -0.42 1.87 16 9 N -0.61 -14.76 3.26 -169.94 -0.55 -15.32 16 10 C 0.10 2.10 4.68 -2.41 -0.01 2.09 16 11 C -0.14 -2.13 6.65 -24.46 -0.16 -2.30 16 12 C 0.13 2.15 3.24 -66.10 -0.21 1.93 16 13 H 0.10 1.51 7.70 -51.93 -0.40 1.11 16 14 N -0.71 -10.37 5.06 -53.00 -0.27 -10.64 16 15 C 0.56 8.48 7.76 -12.37 -0.10 8.39 16 16 O -0.54 -9.72 16.04 5.31 0.09 -9.64 16 17 C -0.13 -1.62 5.87 -104.99 -0.62 -2.23 16 18 C -0.07 -0.80 9.44 -39.59 -0.37 -1.17 16 19 C -0.10 -1.05 9.95 -39.54 -0.39 -1.44 16 20 C 0.14 1.65 6.61 -84.78 -0.56 1.09 16 21 N -0.48 -5.28 10.33 -10.92 -0.11 -5.39 16 22 C 0.14 1.10 11.15 -17.46 -0.19 0.90 16 23 C -0.18 -1.22 10.03 -39.78 -0.40 -1.62 16 24 C -0.05 -0.36 9.89 -39.18 -0.39 -0.75 16 25 C -0.11 -1.23 5.74 -106.82 -0.61 -1.85 16 26 C -0.03 -0.31 9.35 -38.74 -0.36 -0.68 16 27 C 0.13 2.65 6.98 -3.07 -0.02 2.63 16 28 H 0.26 8.19 8.73 -40.82 -0.36 7.83 16 29 H 0.03 0.57 5.56 -51.93 -0.29 0.28 16 30 H 0.06 1.39 6.25 -51.93 -0.32 1.07 16 31 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.40 5.07 6.60 -40.82 -0.27 4.80 16 34 H 0.14 1.23 6.35 -52.49 -0.33 0.90 16 35 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 38 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.15 1.60 7.62 -52.49 -0.40 1.20 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.03 0.71 8.04 -51.93 -0.42 0.30 16 LS Contribution 337.79 15.07 5.09 5.09 Total: -1.00 -35.46 337.79 -8.90 -44.36 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.05 Total: 3.02 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -4.66 Total: -5.30 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -0.18 Total: -59.54 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 26.21 SS G_CDS: -4.20 Total: 22.02 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.46 -8.90 -44.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015647422.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.827 kcal (2) G-P(sol) polarization free energy of solvation -35.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds