Wall clock time and date at job start Fri Apr 10 2020 22:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99607 * 2 1 4 4 H 1.48498 * 109.47398 * 90.00272 * 3 2 1 5 5 H 1.48504 * 109.46962 * 209.99792 * 3 2 1 6 6 H 1.48500 * 109.47439 * 329.99656 * 3 2 1 7 7 C 1.38807 * 120.00452 * 180.27372 * 2 1 3 8 8 H 1.08012 * 119.99629 * 24.23846 * 7 2 1 9 9 N 1.36934 * 120.00605 * 204.24780 * 7 2 1 10 10 C 1.47424 * 125.64535 * 12.90828 * 9 7 2 11 11 C 1.55130 * 104.72156 * 155.82192 * 10 9 7 12 12 C 1.55156 * 101.48324 * 37.29713 * 11 10 9 13 13 H 1.09000 * 110.71946 * 205.96858 * 12 11 10 14 14 N 1.46499 * 110.71794 * 82.69757 * 12 11 10 15 15 C 1.34781 * 120.00151 * 160.02588 * 14 12 11 16 16 O 1.21563 * 119.99667 * 359.97438 * 15 14 12 17 17 C 1.47762 * 120.00328 * 179.97438 * 15 14 12 18 18 C 1.40633 * 119.80362 * 359.72628 * 17 15 14 19 19 C 1.35701 * 120.92110 * 179.77599 * 18 17 15 20 20 C 1.40759 * 120.11162 * 0.46967 * 19 18 17 21 21 N 1.33655 * 120.82918 * 179.78741 * 20 19 18 22 22 C 1.31117 * 121.39002 * 180.02562 * 21 20 19 23 23 C 1.39316 * 121.77311 * 359.97438 * 22 21 20 24 24 C 1.36582 * 119.90487 * 0.02562 * 23 22 21 25 25 C 1.40893 * 118.15562 * 359.97438 * 24 23 22 26 26 C 1.38545 * 119.80659 * 179.97438 * 17 15 14 27 27 C 1.47017 * 125.65134 * 193.22791 * 9 7 2 28 28 H 0.96996 * 119.99877 * 174.58278 * 1 2 3 29 29 H 1.08997 * 110.36983 * 274.75246 * 10 9 7 30 30 H 1.09000 * 110.36477 * 37.07515 * 10 9 7 31 31 H 1.08998 * 111.19284 * 279.19252 * 11 10 9 32 32 H 1.08999 * 110.93901 * 155.29312 * 11 10 9 33 33 H 0.97003 * 120.00177 * 340.02351 * 14 12 11 34 34 H 1.08000 * 119.53752 * 359.97438 * 18 17 15 35 35 H 1.07997 * 119.94597 * 180.25887 * 19 18 17 36 36 H 1.07999 * 119.11397 * 180.02562 * 22 21 20 37 37 H 1.07997 * 120.04953 * 180.02562 * 23 22 21 38 38 H 1.07994 * 120.92298 * 179.97438 * 24 23 22 39 39 H 1.08001 * 120.30138 * 0.02562 * 26 17 15 40 40 H 1.09001 * 109.88097 * 300.43160 * 27 9 7 41 41 H 1.09002 * 109.88666 * 61.59761 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4000 5 1 3.5477 1.4403 -0.7000 6 1 1.4475 2.6527 -0.7001 7 6 2.0103 -1.2020 -0.0057 8 1 1.5417 -2.0944 -0.3940 9 7 3.2890 -1.2567 0.4810 10 6 3.9516 -0.2063 1.2754 11 6 5.0527 -0.9518 2.0743 12 6 5.5318 -2.0001 1.0356 13 1 5.9522 -2.8732 1.5347 14 7 6.5053 -1.4092 0.1141 15 6 7.3358 -2.2040 -0.5895 16 8 7.2773 -3.4112 -0.4591 17 6 8.3174 -1.6081 -1.5195 18 6 8.3776 -0.2113 -1.6715 19 6 9.2731 0.3603 -2.5157 20 6 10.1531 -0.4453 -3.2628 21 7 11.0379 0.1023 -4.1016 22 6 11.8623 -0.6376 -4.8031 23 6 11.8598 -2.0277 -4.7111 24 6 10.9812 -2.6530 -3.8730 25 6 10.0969 -1.8546 -3.1208 26 6 9.1695 -2.4289 -2.2403 27 6 4.2309 -2.3697 0.2923 28 1 -0.4850 -0.8363 -0.0793 29 1 4.3964 0.5418 0.6193 30 1 3.2396 0.2602 1.9563 31 1 4.6380 -1.4379 2.9574 32 1 5.8618 -0.2745 2.3475 33 1 6.5522 -0.4459 0.0102 34 1 7.7038 0.4153 -1.1061 35 1 9.3085 1.4349 -2.6172 36 1 12.5627 -0.1564 -5.4696 37 1 12.5515 -2.6100 -5.3017 38 1 10.9647 -3.7296 -3.7891 39 1 9.1191 -3.5017 -2.1257 40 1 3.8119 -3.2848 0.7110 41 1 4.4364 -2.5056 -0.7695 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015647422.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:33 Heat of formation + Delta-G solvation = 26.144101 kcal Electronic energy + Delta-G solvation = -24669.555505 eV Core-core repulsion = 21127.996665 eV Total energy + Delta-G solvation = -3541.558840 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 5.21 seconds Orbital eigenvalues (eV) -41.98201 -41.00263 -39.21903 -37.69707 -35.68525 -34.53979 -34.05912 -32.00536 -31.13630 -30.93187 -29.56542 -26.34228 -25.45815 -24.88226 -23.27095 -22.64572 -22.44114 -21.38893 -19.73530 -19.39530 -18.82416 -18.01450 -17.25665 -17.10181 -16.78924 -16.14775 -15.94896 -15.51047 -15.46874 -15.36549 -15.24386 -15.01536 -14.75587 -14.45886 -14.01745 -13.83615 -13.68478 -13.12660 -13.05726 -12.87563 -12.74828 -12.59053 -12.52513 -12.34303 -11.77736 -11.62266 -11.56407 -11.24188 -11.12654 -10.67472 -10.53245 -10.28223 -9.85380 -9.36678 -9.16186 -8.65134 -5.46655 -0.83366 -0.36938 0.84846 1.36423 1.39946 1.55441 1.71383 2.01293 2.25980 2.53794 3.05800 3.05937 3.24618 3.34370 3.52996 3.55613 3.62453 3.72756 3.84967 3.94466 3.98639 4.03014 4.16712 4.27530 4.40722 4.50201 4.52156 4.72435 4.77090 4.83550 4.88530 4.88961 4.95145 4.96467 5.00196 5.16193 5.17941 5.24473 5.43735 5.49995 5.55243 5.73385 6.09083 6.43293 6.82369 6.86706 7.08552 7.45074 8.11074 8.82883 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.020431 B = 0.003215 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.153271 B = 8706.170638 C = 9352.965052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.079 4.079 3 Si 1.110 2.890 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.309 1.309 7 C -0.322 4.322 8 H 0.032 0.968 9 N -0.626 5.626 10 C 0.090 3.910 11 C -0.118 4.118 12 C 0.145 3.855 13 H 0.107 0.893 14 N -0.701 5.701 15 C 0.559 3.441 16 O -0.574 6.574 17 C -0.148 4.148 18 C -0.074 4.074 19 C -0.103 4.103 20 C 0.124 3.876 21 N -0.509 5.509 22 C 0.139 3.861 23 C -0.171 4.171 24 C -0.053 4.053 25 C -0.131 4.131 26 C -0.026 4.026 27 C 0.124 3.876 28 H 0.246 0.754 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.411 0.589 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.194 0.806 37 H 0.178 0.822 38 H 0.165 0.835 39 H 0.146 0.854 40 H 0.026 0.974 41 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.958 -0.227 -5.110 30.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.272 4.272 3 Si 0.934 3.066 4 H -0.188 1.188 5 H -0.185 1.185 6 H -0.238 1.238 7 C -0.450 4.450 8 H 0.050 0.950 9 N -0.354 5.354 10 C -0.034 4.034 11 C -0.156 4.156 12 C 0.040 3.960 13 H 0.125 0.875 14 N -0.352 5.352 15 C 0.348 3.652 16 O -0.455 6.455 17 C -0.151 4.151 18 C -0.094 4.094 19 C -0.122 4.122 20 C 0.003 3.997 21 N -0.217 5.217 22 C -0.032 4.032 23 C -0.190 4.190 24 C -0.079 4.079 25 C -0.133 4.133 26 C -0.046 4.046 27 C -0.003 4.003 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.138 0.862 33 H 0.249 0.751 34 H 0.170 0.830 35 H 0.172 0.828 36 H 0.210 0.790 37 H 0.195 0.805 38 H 0.183 0.817 39 H 0.164 0.836 40 H 0.044 0.956 41 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 29.566 1.463 -4.949 30.013 hybrid contribution -1.018 -2.677 -0.395 2.891 sum 28.548 -1.214 -5.344 29.069 Atomic orbital electron populations 1.71029 1.07167 1.29050 1.52770 1.27341 0.96349 1.04729 0.98825 0.83315 0.73927 0.71265 0.78045 1.18765 1.18503 1.23770 1.19896 0.89336 0.95306 1.40498 0.94992 1.44864 1.10916 1.18262 1.61325 1.22340 0.95023 0.92331 0.93693 1.23074 0.98214 0.97565 0.96791 1.21800 0.86635 0.97879 0.89694 0.87550 1.45822 1.35391 1.10871 1.43140 1.18493 0.80556 0.86170 0.79961 1.90743 1.72126 1.15522 1.67149 1.19885 0.99384 0.94834 1.00999 1.21112 0.97812 0.92914 0.97572 1.20887 0.94440 1.01175 0.95657 1.19282 0.94855 0.90632 0.94933 1.68130 1.05580 1.40737 1.07283 1.23759 0.93859 0.91840 0.93789 1.22336 1.00546 0.96078 1.00064 1.21951 0.91875 1.01656 0.92402 1.18994 0.99452 0.94564 1.00273 1.21549 0.91088 1.00679 0.91311 1.21810 0.90213 0.91201 0.97039 0.94515 0.93887 0.93139 0.88530 0.86232 0.75093 0.82994 0.82765 0.78972 0.80461 0.81710 0.83648 0.95630 0.97218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.26 13.70 21.65 0.30 -61.97 16 2 C -0.08 -4.76 5.42 84.86 0.46 -4.30 16 3 Si 1.11 51.98 24.69 68.60 1.69 53.68 16 4 H -0.26 -10.92 6.63 99.48 0.66 -10.26 16 5 H -0.26 -10.82 6.20 99.48 0.62 -10.21 16 6 H -0.31 -14.93 7.11 99.48 0.71 -14.23 16 7 C -0.32 -19.19 10.44 84.03 0.88 -18.31 16 8 H 0.03 2.11 8.06 -2.90 -0.02 2.09 16 9 N -0.63 -30.45 3.26 -691.57 -2.26 -32.70 16 10 C 0.09 3.45 4.68 86.93 0.41 3.86 16 11 C -0.12 -3.21 6.65 32.06 0.21 -2.99 16 12 C 0.15 4.48 3.24 46.18 0.15 4.63 16 13 H 0.11 3.15 7.70 -2.39 -0.02 3.13 16 14 N -0.70 -19.09 5.06 -439.86 -2.23 -21.32 16 15 C 0.56 16.54 7.76 86.76 0.67 17.21 16 16 O -0.57 -20.75 16.04 -3.91 -0.06 -20.81 16 17 C -0.15 -3.64 5.87 -20.10 -0.12 -3.75 16 18 C -0.07 -1.51 9.44 22.27 0.21 -1.30 16 19 C -0.10 -2.09 9.95 22.30 0.22 -1.87 16 20 C 0.12 2.72 6.61 40.35 0.27 2.98 16 21 N -0.51 -10.25 10.33 -188.45 -1.95 -12.19 16 22 C 0.14 1.77 11.15 85.06 0.95 2.72 16 23 C -0.17 -1.67 10.03 22.14 0.22 -1.44 16 24 C -0.05 -0.73 9.89 22.53 0.22 -0.50 16 25 C -0.13 -2.66 5.74 -21.29 -0.12 -2.78 16 26 C -0.03 -0.60 9.35 22.82 0.21 -0.39 16 27 C 0.12 5.23 6.98 86.73 0.61 5.84 16 28 H 0.25 16.22 8.73 -92.71 -0.81 15.41 16 29 H 0.04 1.56 5.56 -2.39 -0.01 1.54 16 30 H 0.05 2.08 6.25 -2.39 -0.01 2.07 16 31 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.41 9.15 6.60 -92.71 -0.61 8.54 16 34 H 0.15 2.39 6.35 -2.91 -0.02 2.37 16 35 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 36 H 0.19 1.00 8.06 -2.91 -0.02 0.98 16 37 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 38 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 39 H 0.15 3.18 7.62 -2.91 -0.02 3.15 16 40 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.01 0.45 8.04 -2.39 -0.02 0.43 16 Total: -1.00 -81.86 337.79 1.23 -80.63 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.28 Total: 15.08 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 5.45 Total: -0.40 kcal Atomic # 7 Polarization: -122.05 SS G_CDS: -6.13 Total: -128.18 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.06 Total: -20.81 kcal Atomic # 14 Polarization: 51.98 SS G_CDS: 1.69 Total: 53.68 kcal Total: -81.86 1.23 -80.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015647422.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.779 kcal (2) G-P(sol) polarization free energy of solvation -81.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.21 seconds