Wall clock time and date at job start Fri Apr 10 2020 22:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99787 * 2 1 4 4 H 1.48500 * 109.47050 * 270.00149 * 3 2 1 5 5 H 1.48501 * 109.47140 * 30.00055 * 3 2 1 6 6 H 1.48501 * 109.47046 * 150.00314 * 3 2 1 7 7 C 1.38806 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99963 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00010 * 0.02562 * 7 2 1 10 10 C 1.47018 * 125.64876 * 359.97105 * 9 7 2 11 11 C 1.54322 * 107.27208 * 178.98642 * 10 9 7 12 12 C 1.55161 * 102.94205 * 337.80737 * 11 10 9 13 13 H 1.08999 * 110.99803 * 153.61445 * 12 11 10 14 14 N 1.46502 * 111.00534 * 277.42833 * 12 11 10 15 15 C 1.34771 * 119.99748 * 205.00429 * 14 12 11 16 16 O 1.21569 * 120.00478 * 359.97438 * 15 14 12 17 17 C 1.47768 * 120.00138 * 180.02562 * 15 14 12 18 18 C 1.40635 * 119.79968 * 359.97386 * 17 15 14 19 19 C 1.35710 * 120.91740 * 179.44715 * 18 17 15 20 20 C 1.40757 * 120.10922 * 0.86256 * 19 18 17 21 21 N 1.33654 * 120.83622 * 179.11335 * 20 19 18 22 22 C 1.31117 * 121.39388 * 180.02562 * 21 20 19 23 23 C 1.39311 * 121.77245 * 0.02562 * 22 21 20 24 24 C 1.36579 * 119.90467 * 359.97438 * 23 22 21 25 25 C 1.40887 * 118.15508 * 0.28140 * 24 23 22 26 26 C 1.38541 * 119.80903 * 179.97438 * 17 15 14 27 27 C 1.47428 * 125.64690 * 180.02562 * 9 7 2 28 28 H 0.97000 * 120.00298 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.88243 * 59.57376 * 10 9 7 30 30 H 1.08996 * 109.88583 * 298.40506 * 10 9 7 31 31 H 1.09008 * 110.72031 * 219.44547 * 11 10 9 32 32 H 1.09000 * 110.72048 * 96.17631 * 11 10 9 33 33 H 0.96998 * 120.00125 * 24.99712 * 14 12 11 34 34 H 1.07995 * 119.54361 * 0.04321 * 18 17 15 35 35 H 1.07997 * 119.94289 * 180.02562 * 19 18 17 36 36 H 1.08007 * 119.10873 * 179.97438 * 22 21 20 37 37 H 1.08001 * 120.04738 * 180.02562 * 23 22 21 38 38 H 1.08002 * 120.91833 * 180.02562 * 24 23 22 39 39 H 1.08007 * 120.29929 * 359.96113 * 26 17 15 40 40 H 1.08999 * 110.36574 * 85.24569 * 27 9 7 41 41 H 1.08997 * 110.36669 * 322.91685 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1374 -2.5328 0.0006 11 6 -0.4484 -4.0441 -0.0255 12 6 0.8521 -4.6564 -0.6099 13 1 0.9834 -5.6857 -0.2762 14 7 0.8588 -4.5766 -2.0727 15 6 1.5906 -5.4505 -2.7918 16 8 2.2455 -6.3047 -2.2266 17 6 1.5979 -5.3698 -4.2673 18 6 0.8392 -4.3797 -4.9168 19 6 0.8381 -4.2780 -6.2701 20 6 1.5883 -5.1809 -7.0467 21 7 1.5838 -5.1050 -8.3811 22 6 2.2781 -5.9406 -9.1151 23 6 3.0536 -6.9479 -8.5452 24 6 3.1037 -7.0826 -7.1870 25 6 2.3520 -6.1862 -6.4019 26 6 2.3520 -6.2699 -5.0025 27 6 1.9335 -3.7311 0.0016 28 1 -0.4850 0.8400 0.0004 29 1 -0.5575 -2.0526 -0.8832 30 1 -0.5543 -2.0841 0.9022 31 1 -1.2984 -4.2518 -0.6755 32 1 -0.6317 -4.4176 0.9820 33 1 0.3365 -3.8950 -2.5237 34 1 0.2568 -3.6847 -4.3302 35 1 0.2500 -3.5114 -6.7526 36 1 2.2473 -5.8459 -10.1906 37 1 3.6149 -7.6208 -9.1765 38 1 3.6998 -7.8573 -6.7278 39 1 2.9347 -7.0292 -4.5021 40 1 2.1663 -4.0413 1.0203 41 1 2.8331 -3.7408 -0.6138 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015647423.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:42 Heat of formation + Delta-G solvation = 49.213653 kcal Electronic energy + Delta-G solvation = -24682.273389 eV Core-core repulsion = 21141.714920 eV Total energy + Delta-G solvation = -3540.558469 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.07731 -39.64694 -37.50428 -36.62136 -33.94959 -33.63121 -32.01556 -30.73404 -30.23565 -29.16452 -27.34270 -25.12074 -24.28918 -24.03483 -22.36206 -21.28717 -20.11778 -19.92761 -18.48527 -17.91339 -17.11824 -16.83425 -15.99196 -15.80189 -14.90516 -14.76466 -14.61677 -14.37295 -14.22203 -14.13315 -13.76662 -13.57903 -13.37477 -13.19085 -12.52702 -12.25180 -11.96778 -11.86679 -11.74971 -11.59384 -10.98693 -10.90424 -10.83724 -10.74991 -10.39943 -10.14961 -9.98187 -9.78067 -9.72036 -9.69712 -9.05577 -8.79001 -8.57834 -8.43661 -6.84486 -5.74071 -3.06753 0.03837 0.46505 1.71207 2.33015 3.30993 3.38570 3.40541 3.44745 3.46167 3.94860 4.01759 4.34736 4.44238 4.48695 4.59630 4.70809 4.82139 4.94851 4.99574 5.22126 5.28958 5.42885 5.46075 5.53020 5.66924 5.72331 5.75061 5.81042 5.81658 6.05960 6.12589 6.17633 6.25691 6.33927 6.46179 6.47347 6.54958 6.66568 6.98967 7.50696 7.53292 7.63724 7.76721 7.80286 8.22440 8.41626 9.20043 9.79825 10.45268 11.37816 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.016426 B = 0.003321 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.183455 B = 8429.354146 C = 9355.204080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.175 3.825 11 C -0.154 4.154 12 C 0.127 3.873 13 H 0.092 0.908 14 N -0.695 5.695 15 C 0.556 3.444 16 O -0.546 6.546 17 C -0.124 4.124 18 C -0.070 4.070 19 C -0.098 4.098 20 C 0.142 3.858 21 N -0.477 5.477 22 C 0.136 3.864 23 C -0.183 4.183 24 C -0.046 4.046 25 C -0.114 4.114 26 C -0.030 4.030 27 C 0.125 3.875 28 H 0.252 0.748 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.403 0.597 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.160 0.840 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.029 0.971 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.254 -14.375 -15.035 20.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.050 3.950 11 C -0.193 4.193 12 C 0.022 3.978 13 H 0.110 0.890 14 N -0.345 5.345 15 C 0.343 3.657 16 O -0.426 6.426 17 C -0.127 4.127 18 C -0.091 4.091 19 C -0.116 4.116 20 C 0.020 3.980 21 N -0.185 5.185 22 C -0.036 4.036 23 C -0.203 4.203 24 C -0.072 4.072 25 C -0.116 4.116 26 C -0.050 4.050 27 C -0.002 4.002 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.239 0.761 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.177 0.823 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.163 0.837 40 H 0.047 0.953 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.101 -14.017 -14.877 20.470 hybrid contribution 0.739 0.703 0.153 1.031 sum 1.839 -13.315 -14.724 19.936 Atomic orbital electron populations 1.69946 1.04803 1.24998 1.57389 1.24768 0.95727 0.97576 1.02352 0.86130 0.78629 0.83529 0.77558 1.21645 1.21688 1.20740 1.19053 0.90439 0.82373 1.43458 0.90555 1.44482 1.01460 0.99877 1.87263 1.21182 0.84578 0.87906 1.01302 1.23242 0.95642 1.00066 1.00356 1.22196 0.97575 0.99621 0.78450 0.88990 1.45776 1.47939 1.33309 1.07501 1.18112 0.79654 0.81538 0.86401 1.90746 1.42923 1.36733 1.72174 1.20055 1.00722 0.98240 0.93706 1.21076 0.96875 0.96455 0.94661 1.20699 0.99251 0.98821 0.92858 1.19014 0.95227 0.93936 0.89797 1.68075 1.19782 1.25200 1.05451 1.23025 0.90584 0.89640 1.00395 1.21885 1.01915 1.00764 0.95769 1.21565 0.95173 0.96544 0.93895 1.18808 1.00282 0.98078 0.94427 1.21425 0.95231 0.96909 0.91449 1.21949 0.94769 0.86365 0.97152 0.93795 0.93605 0.93685 0.91538 0.90815 0.76106 0.84465 0.84036 0.82324 0.84377 0.84063 0.83700 0.95326 0.93916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.35 10.31 55.49 0.57 -25.78 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.22 -6.20 10.28 -15.06 -0.15 -6.35 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -14.97 3.39 -170.08 -0.58 -15.55 16 10 C 0.18 4.00 5.36 -3.07 -0.02 3.98 16 11 C -0.15 -2.67 6.55 -24.90 -0.16 -2.83 16 12 C 0.13 2.24 3.43 -65.78 -0.23 2.01 16 13 H 0.09 1.56 7.54 -51.93 -0.39 1.17 16 14 N -0.70 -11.38 5.14 -52.69 -0.27 -11.65 16 15 C 0.56 9.14 7.77 -12.37 -0.10 9.05 16 16 O -0.55 -10.35 15.95 5.30 0.08 -10.27 16 17 C -0.12 -1.73 5.87 -104.99 -0.62 -2.35 16 18 C -0.07 -0.88 9.44 -39.58 -0.37 -1.26 16 19 C -0.10 -1.19 9.95 -39.53 -0.39 -1.59 16 20 C 0.14 1.80 6.61 -84.78 -0.56 1.24 16 21 N -0.48 -5.74 10.33 -10.92 -0.11 -5.86 16 22 C 0.14 1.20 11.14 -17.46 -0.19 1.00 16 23 C -0.18 -1.37 10.03 -39.78 -0.40 -1.77 16 24 C -0.05 -0.41 9.89 -39.18 -0.39 -0.79 16 25 C -0.11 -1.34 5.74 -106.82 -0.61 -1.95 16 26 C -0.03 -0.38 9.34 -38.74 -0.36 -0.74 16 27 C 0.12 2.63 6.93 -2.53 -0.02 2.61 16 28 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.05 1.13 7.38 -51.93 -0.38 0.75 16 30 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16 31 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.40 6.21 6.66 -40.82 -0.27 5.93 16 34 H 0.14 1.56 6.35 -52.49 -0.33 1.23 16 35 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 37 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.15 1.71 7.62 -52.48 -0.40 1.31 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 343.79 15.07 5.18 5.18 Total: -1.00 -32.93 343.79 -9.91 -42.84 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.10 Total: 4.18 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -4.67 Total: -0.07 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.39 Total: -58.84 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.08 Total: -10.27 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.93 -9.91 -42.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015647423.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.056 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds