Wall clock time and date at job start Fri Apr 10 2020 22:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99787 * 2 1 4 4 H 1.48500 * 109.47050 * 270.00149 * 3 2 1 5 5 H 1.48501 * 109.47140 * 30.00055 * 3 2 1 6 6 H 1.48501 * 109.47046 * 150.00314 * 3 2 1 7 7 C 1.38806 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99963 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00010 * 0.02562 * 7 2 1 10 10 C 1.47018 * 125.64876 * 359.97105 * 9 7 2 11 11 C 1.54322 * 107.27208 * 178.98642 * 10 9 7 12 12 C 1.55161 * 102.94205 * 337.80737 * 11 10 9 13 13 H 1.08999 * 110.99803 * 153.61445 * 12 11 10 14 14 N 1.46502 * 111.00534 * 277.42833 * 12 11 10 15 15 C 1.34771 * 119.99748 * 205.00429 * 14 12 11 16 16 O 1.21569 * 120.00478 * 359.97438 * 15 14 12 17 17 C 1.47768 * 120.00138 * 180.02562 * 15 14 12 18 18 C 1.40635 * 119.79968 * 359.97386 * 17 15 14 19 19 C 1.35710 * 120.91740 * 179.44715 * 18 17 15 20 20 C 1.40757 * 120.10922 * 0.86256 * 19 18 17 21 21 N 1.33654 * 120.83622 * 179.11335 * 20 19 18 22 22 C 1.31117 * 121.39388 * 180.02562 * 21 20 19 23 23 C 1.39311 * 121.77245 * 0.02562 * 22 21 20 24 24 C 1.36579 * 119.90467 * 359.97438 * 23 22 21 25 25 C 1.40887 * 118.15508 * 0.28140 * 24 23 22 26 26 C 1.38541 * 119.80903 * 179.97438 * 17 15 14 27 27 C 1.47428 * 125.64690 * 180.02562 * 9 7 2 28 28 H 0.97000 * 120.00298 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.88243 * 59.57376 * 10 9 7 30 30 H 1.08996 * 109.88583 * 298.40506 * 10 9 7 31 31 H 1.09008 * 110.72031 * 219.44547 * 11 10 9 32 32 H 1.09000 * 110.72048 * 96.17631 * 11 10 9 33 33 H 0.96998 * 120.00125 * 24.99712 * 14 12 11 34 34 H 1.07995 * 119.54361 * 0.04321 * 18 17 15 35 35 H 1.07997 * 119.94289 * 180.02562 * 19 18 17 36 36 H 1.08007 * 119.10873 * 179.97438 * 22 21 20 37 37 H 1.08001 * 120.04738 * 180.02562 * 23 22 21 38 38 H 1.08002 * 120.91833 * 180.02562 * 24 23 22 39 39 H 1.08007 * 120.29929 * 359.96113 * 26 17 15 40 40 H 1.08999 * 110.36574 * 85.24569 * 27 9 7 41 41 H 1.08997 * 110.36669 * 322.91685 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1374 -2.5328 0.0006 11 6 -0.4484 -4.0441 -0.0255 12 6 0.8521 -4.6564 -0.6099 13 1 0.9834 -5.6857 -0.2762 14 7 0.8588 -4.5766 -2.0727 15 6 1.5906 -5.4505 -2.7918 16 8 2.2455 -6.3047 -2.2266 17 6 1.5979 -5.3698 -4.2673 18 6 0.8392 -4.3797 -4.9168 19 6 0.8381 -4.2780 -6.2701 20 6 1.5883 -5.1809 -7.0467 21 7 1.5838 -5.1050 -8.3811 22 6 2.2781 -5.9406 -9.1151 23 6 3.0536 -6.9479 -8.5452 24 6 3.1037 -7.0826 -7.1870 25 6 2.3520 -6.1862 -6.4019 26 6 2.3520 -6.2699 -5.0025 27 6 1.9335 -3.7311 0.0016 28 1 -0.4850 0.8400 0.0004 29 1 -0.5575 -2.0526 -0.8832 30 1 -0.5543 -2.0841 0.9022 31 1 -1.2984 -4.2518 -0.6755 32 1 -0.6317 -4.4176 0.9820 33 1 0.3365 -3.8950 -2.5237 34 1 0.2568 -3.6847 -4.3302 35 1 0.2500 -3.5114 -6.7526 36 1 2.2473 -5.8459 -10.1906 37 1 3.6149 -7.6208 -9.1765 38 1 3.6998 -7.8573 -6.7278 39 1 2.9347 -7.0292 -4.5021 40 1 2.1663 -4.0413 1.0203 41 1 2.8331 -3.7408 -0.6138 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015647423.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:40 Heat of formation + Delta-G solvation = 28.329802 kcal Electronic energy + Delta-G solvation = -24683.178981 eV Core-core repulsion = 21141.714920 eV Total energy + Delta-G solvation = -3541.464061 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.95639 -40.89566 -39.00136 -37.66750 -35.49890 -34.51967 -33.72602 -31.81493 -31.11899 -30.86779 -28.98485 -26.63264 -25.68363 -24.87354 -23.26099 -22.49601 -21.91049 -21.38756 -19.57581 -18.95248 -18.67058 -17.97766 -17.21628 -16.85564 -16.64104 -16.14285 -15.69284 -15.65640 -15.40893 -15.27459 -15.06739 -14.77255 -14.46243 -14.06596 -13.99635 -13.84101 -13.57884 -13.09553 -12.92222 -12.80296 -12.70631 -12.49633 -12.29434 -12.12152 -12.02318 -11.81515 -11.61424 -11.59702 -11.07870 -10.72296 -10.51867 -10.17596 -9.83616 -9.35846 -8.86202 -7.85281 -5.19315 -0.81578 -0.36313 0.86498 1.38154 1.45830 1.46330 1.55130 2.10082 2.29134 2.48931 3.06941 3.25409 3.33677 3.53630 3.59312 3.67226 3.71121 3.82614 3.95895 4.00126 4.04190 4.07129 4.26942 4.33001 4.51603 4.67367 4.72898 4.75278 4.85042 4.89229 4.93779 4.98824 5.01526 5.03962 5.17963 5.25304 5.44411 5.45874 5.54405 5.67660 5.74500 5.76991 6.19968 6.49999 6.88081 7.11766 7.12449 7.77159 8.41123 9.24518 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.016426 B = 0.003321 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.183455 B = 8429.354146 C = 9355.204080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.058 4.058 3 Si 0.973 3.027 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.621 5.621 10 C 0.183 3.817 11 C -0.134 4.134 12 C 0.140 3.860 13 H 0.107 0.893 14 N -0.695 5.695 15 C 0.559 3.441 16 O -0.575 6.575 17 C -0.148 4.148 18 C -0.075 4.075 19 C -0.106 4.106 20 C 0.125 3.875 21 N -0.511 5.511 22 C 0.139 3.861 23 C -0.170 4.170 24 C -0.051 4.051 25 C -0.130 4.130 26 C -0.024 4.024 27 C 0.122 3.878 28 H 0.247 0.753 29 H 0.021 0.979 30 H 0.010 0.990 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.407 0.593 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.194 0.806 37 H 0.180 0.820 38 H 0.169 0.831 39 H 0.150 0.850 40 H 0.035 0.965 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.064 -16.001 -17.079 23.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.252 4.252 3 Si 0.802 3.198 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.348 5.348 10 C 0.058 3.942 11 C -0.173 4.173 12 C 0.034 3.966 13 H 0.125 0.875 14 N -0.345 5.345 15 C 0.347 3.653 16 O -0.457 6.457 17 C -0.151 4.151 18 C -0.095 4.095 19 C -0.124 4.124 20 C 0.004 3.996 21 N -0.220 5.220 22 C -0.033 4.033 23 C -0.190 4.190 24 C -0.076 4.076 25 C -0.132 4.132 26 C -0.043 4.043 27 C -0.005 4.005 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.028 0.972 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.244 0.756 34 H 0.159 0.841 35 H 0.167 0.833 36 H 0.211 0.789 37 H 0.197 0.803 38 H 0.186 0.814 39 H 0.168 0.832 40 H 0.052 0.948 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.915 -15.664 -16.931 23.145 hybrid contribution 0.581 1.124 0.614 1.406 sum 2.496 -14.540 -16.317 21.997 Atomic orbital electron populations 1.70140 1.05882 1.25222 1.58137 1.25507 0.96612 1.00469 1.02587 0.85164 0.77618 0.79622 0.77427 1.21337 1.21877 1.19976 1.19336 0.90680 0.83863 1.43167 0.90951 1.44706 1.02480 1.00498 1.87067 1.20972 0.83377 0.91431 0.98403 1.23101 0.96366 0.95572 1.02231 1.22028 0.96097 0.99352 0.79125 0.87498 1.45762 1.48147 1.33567 1.07031 1.18450 0.78673 0.80729 0.87403 1.90715 1.44108 1.37874 1.72991 1.19903 1.02922 1.00044 0.92186 1.21059 0.97073 0.96427 0.94919 1.20843 0.99554 0.99244 0.92771 1.19217 0.95563 0.94312 0.90528 1.68117 1.21650 1.27008 1.05177 1.23773 0.88948 0.88645 1.01912 1.22342 1.00749 1.00271 0.95596 1.21958 0.94743 0.96409 0.94537 1.18997 1.01120 0.98908 0.94175 1.21557 0.94399 0.96311 0.92066 1.22074 0.95284 0.85638 0.97473 0.94327 0.96091 0.97161 0.88792 0.88891 0.75639 0.84093 0.83281 0.78947 0.80264 0.81398 0.83195 0.94771 0.95422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.29 10.31 21.65 0.22 -55.07 16 2 C -0.06 -3.29 5.49 84.86 0.47 -2.82 16 3 Si 0.97 45.85 29.55 68.60 2.03 47.88 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.24 -13.58 10.28 84.03 0.86 -12.72 16 8 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.62 -31.40 3.39 -692.01 -2.35 -33.75 16 10 C 0.18 8.52 5.36 86.73 0.47 8.98 16 11 C -0.13 -4.49 6.55 31.78 0.21 -4.28 16 12 C 0.14 4.82 3.43 46.38 0.16 4.98 16 13 H 0.11 3.46 7.54 -2.39 -0.02 3.44 16 14 N -0.70 -22.71 5.14 -438.89 -2.25 -24.96 16 15 C 0.56 18.44 7.77 86.76 0.67 19.11 16 16 O -0.58 -21.78 15.95 -3.93 -0.06 -21.85 16 17 C -0.15 -4.16 5.87 -20.10 -0.12 -4.27 16 18 C -0.07 -1.91 9.44 22.27 0.21 -1.70 16 19 C -0.11 -2.61 9.95 22.30 0.22 -2.39 16 20 C 0.12 3.09 6.61 40.35 0.27 3.36 16 21 N -0.51 -11.53 10.33 -188.45 -1.95 -13.47 16 22 C 0.14 2.00 11.14 85.06 0.95 2.94 16 23 C -0.17 -1.85 10.03 22.14 0.22 -1.63 16 24 C -0.05 -0.75 9.89 22.53 0.22 -0.53 16 25 C -0.13 -2.90 5.74 -21.29 -0.12 -3.02 16 26 C -0.02 -0.59 9.34 22.82 0.21 -0.37 16 27 C 0.12 5.17 6.93 86.85 0.60 5.77 16 28 H 0.25 14.13 8.31 -92.71 -0.77 13.35 16 29 H 0.02 1.07 7.38 -2.39 -0.02 1.05 16 30 H 0.01 0.54 7.50 -2.39 -0.02 0.52 16 31 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 32 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.41 12.65 6.66 -92.71 -0.62 12.03 16 34 H 0.14 3.34 6.35 -2.91 -0.02 3.32 16 35 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 36 H 0.19 1.29 8.06 -2.91 -0.02 1.26 16 37 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16 38 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 39 H 0.15 3.45 7.62 -2.91 -0.02 3.43 16 40 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -73.18 343.79 1.58 -71.60 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.44 Total: 18.21 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 5.50 Total: 11.42 kcal Atomic # 7 Polarization: -120.93 SS G_CDS: -6.33 Total: -127.26 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.06 Total: -21.85 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -73.18 1.58 -71.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015647423.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.931 kcal (2) G-P(sol) polarization free energy of solvation -73.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds