Wall clock time and date at job start Fri Apr 10 2020 22:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00005 * 2 1 4 4 H 1.48501 * 109.46835 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47036 * 300.00032 * 3 2 1 6 6 H 1.48499 * 109.46782 * 60.00051 * 3 2 1 7 7 C 1.38813 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00149 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64683 * 359.97438 * 9 7 2 11 11 C 1.54327 * 107.26878 * 178.98880 * 10 9 7 12 12 C 1.55154 * 102.94154 * 337.80398 * 11 10 9 13 13 H 1.09008 * 111.00893 * 277.39250 * 12 11 10 14 14 N 1.46498 * 111.00422 * 153.57647 * 12 11 10 15 15 C 1.34782 * 120.00167 * 155.00402 * 14 12 11 16 16 O 1.21565 * 119.99835 * 359.97438 * 15 14 12 17 17 C 1.47758 * 120.00143 * 180.02562 * 15 14 12 18 18 C 1.40602 * 120.27014 * 359.97438 * 17 15 14 19 19 N 1.30798 * 121.53988 * 179.97438 * 18 17 15 20 20 C 1.33814 * 121.71918 * 0.04396 * 19 18 17 21 21 C 1.40526 * 120.82339 * 179.97438 * 20 19 18 22 22 C 1.36133 * 119.81669 * 179.97438 * 21 20 19 23 23 C 1.39347 * 121.09029 * 0.02562 * 22 21 20 24 24 C 1.36141 * 120.82884 * 0.27793 * 23 22 21 25 25 C 1.40541 * 119.62066 * 359.45408 * 24 23 22 26 26 C 1.39008 * 120.26948 * 179.97438 * 17 15 14 27 27 C 1.47421 * 125.64689 * 180.02562 * 9 7 2 28 28 H 0.96999 * 120.00117 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.88251 * 59.57296 * 10 9 7 30 30 H 1.08999 * 109.88483 * 298.40552 * 10 9 7 31 31 H 1.08997 * 110.71988 * 219.44531 * 11 10 9 32 32 H 1.08998 * 110.72439 * 96.16778 * 11 10 9 33 33 H 0.96996 * 120.00331 * 335.00456 * 14 12 11 34 34 H 1.08001 * 119.22701 * 0.02562 * 18 17 15 35 35 H 1.07999 * 120.09244 * 359.95603 * 21 20 19 36 36 H 1.08001 * 119.45900 * 179.97438 * 22 21 20 37 37 H 1.08002 * 119.58215 * 179.97438 * 23 22 21 38 38 H 1.08000 * 120.18856 * 179.69850 * 24 23 22 39 39 H 1.08004 * 121.01980 * 359.95314 * 26 17 15 40 40 H 1.08993 * 110.36938 * 85.23929 * 27 9 7 41 41 H 1.09007 * 110.36605 * 322.91842 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1375 -2.5327 -0.0017 11 6 -0.4485 -4.0441 -0.0291 12 6 0.8519 -4.6559 -0.6140 13 1 0.8567 -4.5962 -1.7024 14 7 1.0291 -6.0394 -0.1660 15 6 1.7594 -6.8985 -0.9042 16 8 2.2707 -6.5255 -1.9421 17 6 1.9377 -8.2941 -0.4526 18 6 1.3484 -8.7317 0.7466 19 7 1.4896 -9.9613 1.1695 20 6 2.2015 -10.8636 0.4841 21 6 2.3414 -12.1798 0.9562 22 6 3.0699 -13.0812 0.2422 23 6 3.6844 -12.7223 -0.9559 24 6 3.5772 -11.4555 -1.4428 25 6 2.8279 -10.5002 -0.7348 26 6 2.6893 -9.1850 -1.2099 27 6 1.9334 -3.7311 -0.0017 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5575 -2.0518 -0.8851 30 1 -0.5544 -2.0848 0.9003 31 1 -1.2984 -4.2513 -0.6793 32 1 -0.6317 -4.4185 0.9780 33 1 0.6208 -6.3371 0.6620 34 1 0.7648 -8.0364 1.3318 35 1 1.8725 -12.4752 1.8832 36 1 3.1740 -14.0911 0.6106 37 1 4.2570 -13.4570 -1.5024 38 1 4.0617 -11.1872 -2.3700 39 1 3.1525 -8.8760 -2.1354 40 1 2.1663 -4.0422 1.0166 41 1 2.8330 -3.7403 -0.6172 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015760192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:48 Heat of formation + Delta-G solvation = 49.670518 kcal Electronic energy + Delta-G solvation = -24169.036251 eV Core-core repulsion = 20628.497593 eV Total energy + Delta-G solvation = -3540.538658 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.23934 -39.59565 -37.49148 -37.02090 -34.17796 -33.73339 -32.09372 -30.90200 -30.39664 -29.14765 -27.24343 -25.12237 -24.40073 -24.09759 -22.43524 -21.28434 -20.43148 -20.03212 -18.53471 -18.08176 -17.44132 -16.80958 -16.19518 -15.68647 -15.12723 -14.94191 -14.64380 -14.54460 -14.39004 -14.10657 -13.98759 -13.74014 -13.36844 -12.86874 -12.44582 -12.29084 -12.15528 -12.09738 -11.87303 -11.80472 -11.06805 -10.93087 -10.82224 -10.77742 -10.47713 -10.16979 -10.05817 -9.92991 -9.73973 -9.60383 -9.19016 -8.83339 -8.63866 -8.59951 -6.84902 -5.72074 -3.05662 -0.08409 0.28355 1.54366 2.29431 3.11517 3.15456 3.40947 3.46719 3.49138 3.80233 3.85329 4.21474 4.37922 4.45694 4.47041 4.52820 4.68206 4.75964 4.87539 5.04930 5.24893 5.39963 5.42516 5.52388 5.52950 5.61653 5.67976 5.71742 5.77217 5.92736 6.01762 6.10779 6.15009 6.28850 6.39795 6.40940 6.53439 6.66604 6.92127 7.49927 7.52379 7.56634 7.59584 7.80986 8.21495 8.26334 9.21235 9.81011 10.45552 11.39920 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.036310 B = 0.002391 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.943589 B =11709.441593 C =12002.410652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.150 4.150 12 C 0.126 3.874 13 H 0.099 0.901 14 N -0.708 5.708 15 C 0.561 3.439 16 O -0.533 6.533 17 C -0.188 4.188 18 C 0.163 3.837 19 N -0.476 5.476 20 C 0.140 3.860 21 C -0.098 4.098 22 C -0.093 4.093 23 C -0.122 4.122 24 C -0.085 4.085 25 C -0.113 4.113 26 C 0.011 3.989 27 C 0.129 3.871 28 H 0.252 0.748 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.397 0.603 34 H 0.163 0.837 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.154 0.846 40 H 0.021 0.979 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.905 -26.541 0.401 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.189 4.189 12 C 0.022 3.978 13 H 0.117 0.883 14 N -0.359 5.359 15 C 0.346 3.654 16 O -0.411 6.411 17 C -0.193 4.193 18 C -0.011 4.011 19 N -0.184 5.184 20 C 0.019 3.981 21 C -0.117 4.117 22 C -0.113 4.113 23 C -0.140 4.140 24 C -0.104 4.104 25 C -0.115 4.115 26 C -0.016 4.016 27 C 0.001 3.999 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.232 0.768 34 H 0.180 0.820 35 H 0.155 0.845 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.172 0.828 40 H 0.038 0.962 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.857 -26.378 0.440 26.536 hybrid contribution 0.573 1.061 -0.285 1.239 sum 3.431 -25.317 0.155 25.549 Atomic orbital electron populations 1.69951 1.04876 1.24985 1.57284 1.24810 0.95766 0.97707 1.02237 0.86018 0.78750 0.83634 0.77219 1.20481 1.21720 1.21750 1.19120 0.90532 0.82224 1.43547 0.90310 1.44400 1.01640 0.99779 1.87257 1.21157 0.84517 0.87395 1.01558 1.23200 0.95809 1.00060 0.99811 1.22389 0.97107 0.78119 1.00223 0.88258 1.45936 1.52361 1.11758 1.25803 1.17949 0.78995 0.84363 0.84069 1.90802 1.48228 1.78218 1.23816 1.21057 1.03916 0.95809 0.98513 1.23089 0.93736 0.92414 0.91849 1.67958 1.15975 1.02175 1.32247 1.19028 0.93953 0.94195 0.90930 1.20841 0.99365 0.90818 1.00658 1.20996 0.95920 0.99814 0.94564 1.20959 1.00025 0.96538 0.96473 1.21099 0.97032 0.92825 0.99403 1.18851 1.01039 0.94793 0.96805 1.21997 0.91172 0.90411 0.97984 1.21825 0.94800 0.86182 0.97053 0.93764 0.93181 0.93484 0.91471 0.91928 0.76799 0.81976 0.84469 0.85094 0.85245 0.84787 0.82808 0.96180 0.93830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.06 10.31 55.49 0.57 -26.48 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 9 N -0.60 -15.53 3.39 -170.08 -0.58 -16.11 16 10 C 0.18 4.24 5.37 -3.06 -0.02 4.23 16 11 C -0.15 -2.62 6.60 -24.90 -0.16 -2.79 16 12 C 0.13 2.24 3.42 -65.78 -0.23 2.02 16 13 H 0.10 1.95 7.54 -51.92 -0.39 1.56 16 14 N -0.71 -9.87 5.15 -52.69 -0.27 -10.14 16 15 C 0.56 8.29 7.77 -12.37 -0.10 8.20 16 16 O -0.53 -9.85 16.02 5.31 0.09 -9.76 16 17 C -0.19 -2.27 5.89 -104.83 -0.62 -2.89 16 18 C 0.16 1.76 10.68 -17.10 -0.18 1.58 16 19 N -0.48 -5.58 10.30 -10.67 -0.11 -5.69 16 20 C 0.14 1.54 6.61 -84.79 -0.56 0.98 16 21 C -0.10 -0.84 9.97 -39.48 -0.39 -1.24 16 22 C -0.09 -0.61 9.94 -39.93 -0.40 -1.00 16 23 C -0.12 -0.78 9.96 -39.92 -0.40 -1.18 16 24 C -0.08 -0.66 9.77 -39.47 -0.39 -1.05 16 25 C -0.11 -1.17 5.74 -106.82 -0.61 -1.78 16 26 C 0.01 0.12 9.46 -38.43 -0.36 -0.24 16 27 C 0.13 2.75 6.93 -2.53 -0.02 2.73 16 28 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 30 H 0.05 1.22 7.50 -51.93 -0.39 0.83 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.96 8.00 -51.93 -0.42 0.55 16 33 H 0.40 4.27 6.59 -40.82 -0.27 4.00 16 34 H 0.16 1.31 6.37 -52.49 -0.33 0.98 16 35 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 39 H 0.15 1.60 7.70 -52.48 -0.40 1.20 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 343.83 15.07 5.18 5.18 Total: -1.00 -33.94 343.83 -9.92 -43.86 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -5.09 Total: 1.20 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -4.68 Total: 0.67 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -0.39 Total: -58.42 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.94 -9.92 -43.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015760192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.533 kcal (2) G-P(sol) polarization free energy of solvation -33.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds