Wall clock time and date at job start Fri Apr 10 2020 22:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00005 * 2 1 4 4 H 1.48501 * 109.46835 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47036 * 300.00032 * 3 2 1 6 6 H 1.48499 * 109.46782 * 60.00051 * 3 2 1 7 7 C 1.38813 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00149 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64683 * 359.97438 * 9 7 2 11 11 C 1.54327 * 107.26878 * 178.98880 * 10 9 7 12 12 C 1.55154 * 102.94154 * 337.80398 * 11 10 9 13 13 H 1.09008 * 111.00893 * 277.39250 * 12 11 10 14 14 N 1.46498 * 111.00422 * 153.57647 * 12 11 10 15 15 C 1.34782 * 120.00167 * 155.00402 * 14 12 11 16 16 O 1.21565 * 119.99835 * 359.97438 * 15 14 12 17 17 C 1.47758 * 120.00143 * 180.02562 * 15 14 12 18 18 C 1.40602 * 120.27014 * 359.97438 * 17 15 14 19 19 N 1.30798 * 121.53988 * 179.97438 * 18 17 15 20 20 C 1.33814 * 121.71918 * 0.04396 * 19 18 17 21 21 C 1.40526 * 120.82339 * 179.97438 * 20 19 18 22 22 C 1.36133 * 119.81669 * 179.97438 * 21 20 19 23 23 C 1.39347 * 121.09029 * 0.02562 * 22 21 20 24 24 C 1.36141 * 120.82884 * 0.27793 * 23 22 21 25 25 C 1.40541 * 119.62066 * 359.45408 * 24 23 22 26 26 C 1.39008 * 120.26948 * 179.97438 * 17 15 14 27 27 C 1.47421 * 125.64689 * 180.02562 * 9 7 2 28 28 H 0.96999 * 120.00117 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.88251 * 59.57296 * 10 9 7 30 30 H 1.08999 * 109.88483 * 298.40552 * 10 9 7 31 31 H 1.08997 * 110.71988 * 219.44531 * 11 10 9 32 32 H 1.08998 * 110.72439 * 96.16778 * 11 10 9 33 33 H 0.96996 * 120.00331 * 335.00456 * 14 12 11 34 34 H 1.08001 * 119.22701 * 0.02562 * 18 17 15 35 35 H 1.07999 * 120.09244 * 359.95603 * 21 20 19 36 36 H 1.08001 * 119.45900 * 179.97438 * 22 21 20 37 37 H 1.08002 * 119.58215 * 179.97438 * 23 22 21 38 38 H 1.08000 * 120.18856 * 179.69850 * 24 23 22 39 39 H 1.08004 * 121.01980 * 359.95314 * 26 17 15 40 40 H 1.08993 * 110.36938 * 85.23929 * 27 9 7 41 41 H 1.09007 * 110.36605 * 322.91842 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1375 -2.5327 -0.0017 11 6 -0.4485 -4.0441 -0.0291 12 6 0.8519 -4.6559 -0.6140 13 1 0.8567 -4.5962 -1.7024 14 7 1.0291 -6.0394 -0.1660 15 6 1.7594 -6.8985 -0.9042 16 8 2.2707 -6.5255 -1.9421 17 6 1.9377 -8.2941 -0.4526 18 6 1.3484 -8.7317 0.7466 19 7 1.4896 -9.9613 1.1695 20 6 2.2015 -10.8636 0.4841 21 6 2.3414 -12.1798 0.9562 22 6 3.0699 -13.0812 0.2422 23 6 3.6844 -12.7223 -0.9559 24 6 3.5772 -11.4555 -1.4428 25 6 2.8279 -10.5002 -0.7348 26 6 2.6893 -9.1850 -1.2099 27 6 1.9334 -3.7311 -0.0017 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5575 -2.0518 -0.8851 30 1 -0.5544 -2.0848 0.9003 31 1 -1.2984 -4.2513 -0.6793 32 1 -0.6317 -4.4185 0.9780 33 1 0.6208 -6.3371 0.6620 34 1 0.7648 -8.0364 1.3318 35 1 1.8725 -12.4752 1.8832 36 1 3.1740 -14.0911 0.6106 37 1 4.2570 -13.4570 -1.5024 38 1 4.0617 -11.1872 -2.3700 39 1 3.1525 -8.8760 -2.1354 40 1 2.1663 -4.0422 1.0166 41 1 2.8330 -3.7403 -0.6172 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015760192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:46 Heat of formation + Delta-G solvation = 27.462147 kcal Electronic energy + Delta-G solvation = -24169.999278 eV Core-core repulsion = 20628.497593 eV Total energy + Delta-G solvation = -3541.501685 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -42.04174 -40.76805 -38.96349 -37.89771 -35.73066 -34.51797 -33.86407 -31.88289 -31.07506 -30.87758 -28.87537 -26.68695 -25.44014 -25.10683 -23.11316 -22.52648 -22.00457 -21.67842 -19.51433 -18.96955 -18.81119 -18.14057 -17.29619 -16.81588 -16.58459 -16.25158 -15.89894 -15.58384 -15.45018 -15.22031 -15.10406 -14.58654 -14.40387 -14.21948 -14.07797 -13.94962 -13.70925 -12.96786 -12.82061 -12.77211 -12.73892 -12.46703 -12.40662 -12.14391 -12.00141 -11.83140 -11.62681 -11.58000 -11.34861 -10.73418 -10.56334 -10.23189 -9.84208 -9.30915 -8.92742 -7.87369 -5.23431 -0.83849 -0.43364 0.82700 1.45266 1.46567 1.48876 1.56995 1.94895 2.19745 2.49209 3.05130 3.13212 3.31368 3.50715 3.55029 3.65134 3.69888 3.76937 3.84281 3.98553 4.03727 4.19498 4.22277 4.33148 4.42692 4.58274 4.69245 4.71829 4.80070 4.86778 4.94178 4.97226 5.05148 5.05712 5.33857 5.40487 5.41935 5.45696 5.47697 5.64160 5.73649 5.84039 6.17871 6.44297 6.73835 7.07937 7.10460 7.73743 8.36831 9.22895 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.036310 B = 0.002391 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.943589 B =11709.441593 C =12002.410652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.064 4.064 3 Si 0.980 3.020 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.245 4.245 8 H 0.078 0.922 9 N -0.626 5.626 10 C 0.183 3.817 11 C -0.129 4.129 12 C 0.146 3.854 13 H 0.080 0.920 14 N -0.694 5.694 15 C 0.565 3.435 16 O -0.576 6.576 17 C -0.203 4.203 18 C 0.162 3.838 19 N -0.492 5.492 20 C 0.119 3.881 21 C -0.118 4.118 22 C -0.078 4.078 23 C -0.115 4.115 24 C -0.094 4.094 25 C -0.128 4.128 26 C 0.011 3.989 27 C 0.127 3.873 28 H 0.249 0.751 29 H 0.014 0.986 30 H 0.018 0.982 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.416 0.584 34 H 0.186 0.814 35 H 0.146 0.854 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.034 0.966 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.594 -29.520 0.941 29.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.257 4.257 3 Si 0.808 3.192 4 H -0.193 1.193 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.374 4.374 8 H 0.095 0.905 9 N -0.353 5.353 10 C 0.058 3.942 11 C -0.167 4.167 12 C 0.040 3.960 13 H 0.098 0.902 14 N -0.346 5.346 15 C 0.353 3.647 16 O -0.456 6.456 17 C -0.209 4.209 18 C -0.012 4.012 19 N -0.200 5.200 20 C -0.001 4.001 21 C -0.137 4.137 22 C -0.097 4.097 23 C -0.132 4.132 24 C -0.113 4.113 25 C -0.130 4.130 26 C -0.016 4.016 27 C 0.000 4.000 28 H 0.058 0.942 29 H 0.032 0.968 30 H 0.037 0.963 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.255 0.745 34 H 0.203 0.797 35 H 0.164 0.836 36 H 0.182 0.818 37 H 0.180 0.820 38 H 0.170 0.830 39 H 0.173 0.827 40 H 0.051 0.949 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.546 -29.413 1.012 29.643 hybrid contribution 0.456 1.787 -0.471 1.904 sum 4.002 -27.626 0.541 27.919 Atomic orbital electron populations 1.70158 1.06130 1.25376 1.58058 1.25649 0.96733 1.00938 1.02379 0.84995 0.78041 0.79315 0.76870 1.19320 1.21787 1.21503 1.19452 0.90900 0.83712 1.43323 0.90452 1.44684 1.02728 1.00712 1.87172 1.20956 0.83395 0.91386 0.98455 1.23021 0.96197 0.95208 1.02290 1.21866 0.95766 0.79509 0.98877 0.90211 1.45645 1.52393 1.09978 1.26537 1.18308 0.77851 0.85275 0.83246 1.90780 1.49964 1.79159 1.25725 1.20803 1.06027 0.94205 0.99832 1.23352 0.93660 0.92705 0.91463 1.67997 1.16699 1.02528 1.32755 1.19457 0.94173 0.95143 0.91351 1.21078 1.00610 0.90317 1.01657 1.21451 0.93642 1.00822 0.93827 1.21408 0.99093 0.96474 0.96264 1.21400 0.96800 0.93069 1.00037 1.19027 1.01934 0.94844 0.97191 1.22147 0.90617 0.90978 0.97858 1.21945 0.95177 0.85275 0.97570 0.94200 0.96774 0.96350 0.89099 0.88775 0.74545 0.79724 0.83616 0.81750 0.81961 0.83014 0.82749 0.94874 0.95524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.25 10.31 21.65 0.22 -57.03 16 2 C -0.06 -3.70 5.49 84.86 0.47 -3.23 16 3 Si 0.98 46.61 29.55 68.60 2.03 48.63 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 7 C -0.24 -14.17 10.28 84.03 0.86 -13.31 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 9 N -0.63 -33.00 3.39 -692.00 -2.35 -35.35 16 10 C 0.18 8.92 5.37 86.73 0.47 9.38 16 11 C -0.13 -4.34 6.60 31.78 0.21 -4.14 16 12 C 0.15 5.13 3.42 46.38 0.16 5.28 16 13 H 0.08 3.17 7.54 -2.38 -0.02 3.16 16 14 N -0.69 -18.53 5.15 -438.90 -2.26 -20.80 16 15 C 0.57 16.61 7.77 86.76 0.67 17.28 16 16 O -0.58 -21.70 16.02 -3.92 -0.06 -21.76 16 17 C -0.20 -4.84 5.89 -20.00 -0.12 -4.96 16 18 C 0.16 3.33 10.68 85.42 0.91 4.25 16 19 N -0.49 -11.03 10.30 -187.68 -1.93 -12.97 16 20 C 0.12 2.47 6.61 40.27 0.27 2.74 16 21 C -0.12 -1.77 9.97 22.34 0.22 -1.55 16 22 C -0.08 -0.73 9.94 22.05 0.22 -0.51 16 23 C -0.11 -1.04 9.96 22.05 0.22 -0.82 16 24 C -0.09 -1.26 9.77 22.34 0.22 -1.04 16 25 C -0.13 -2.50 5.74 -21.29 -0.12 -2.63 16 26 C 0.01 0.23 9.46 23.01 0.22 0.45 16 27 C 0.13 5.47 6.93 86.86 0.60 6.07 16 28 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.01 0.77 7.38 -2.39 -0.02 0.75 16 30 H 0.02 0.98 7.50 -2.39 -0.02 0.96 16 31 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.09 2.63 8.00 -2.39 -0.02 2.61 16 33 H 0.42 7.98 6.59 -92.71 -0.61 7.37 16 34 H 0.19 2.64 6.37 -2.91 -0.02 2.62 16 35 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 36 H 0.16 0.44 8.06 -2.91 -0.02 0.41 16 37 H 0.16 0.43 8.06 -2.91 -0.02 0.41 16 38 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 39 H 0.15 3.26 7.70 -2.91 -0.02 3.24 16 40 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -76.96 343.83 1.57 -75.39 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.45 Total: 10.61 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 5.48 Total: 13.27 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -6.32 Total: -126.14 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.06 Total: -21.76 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Total: -76.96 1.57 -75.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015760192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.849 kcal (2) G-P(sol) polarization free energy of solvation -76.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds