Wall clock time and date at job start Fri Apr 10 2020 22:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 119.99880 * 2 1 4 4 H 1.48500 * 109.47481 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47275 * 300.00490 * 3 2 1 6 6 H 1.48495 * 109.47389 * 60.00138 * 3 2 1 7 7 C 1.38811 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00101 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00211 * 359.97438 * 7 2 1 10 10 C 1.47029 * 125.64514 * 359.97438 * 9 7 2 11 11 C 1.54318 * 107.26944 * 178.98561 * 10 9 7 12 12 C 1.55157 * 102.94344 * 337.80369 * 11 10 9 13 13 H 1.09001 * 111.00138 * 153.61377 * 12 11 10 14 14 N 1.46501 * 111.00226 * 277.42628 * 12 11 10 15 15 C 1.34772 * 119.99657 * 204.99742 * 14 12 11 16 16 O 1.21565 * 120.00668 * 0.02562 * 15 14 12 17 17 C 1.47766 * 119.99989 * 180.02562 * 15 14 12 18 18 C 1.40604 * 120.26308 * 359.97438 * 17 15 14 19 19 N 1.30804 * 121.53674 * 180.02562 * 18 17 15 20 20 C 1.33827 * 121.71810 * 0.04559 * 19 18 17 21 21 C 1.40523 * 120.82389 * 179.97438 * 20 19 18 22 22 C 1.36133 * 119.81871 * 179.97438 * 21 20 19 23 23 C 1.39339 * 121.08751 * 0.04020 * 22 21 20 24 24 C 1.36148 * 120.83292 * 359.93693 * 23 22 21 25 25 C 1.40545 * 119.61625 * 0.04210 * 24 23 22 26 26 C 1.39006 * 120.27163 * 180.02562 * 17 15 14 27 27 C 1.47425 * 125.65352 * 180.02562 * 9 7 2 28 28 H 0.96999 * 120.00698 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.88217 * 59.56343 * 10 9 7 30 30 H 1.09007 * 109.87587 * 298.40030 * 10 9 7 31 31 H 1.08998 * 110.72121 * 219.43978 * 11 10 9 32 32 H 1.09004 * 110.87234 * 96.23849 * 11 10 9 33 33 H 0.97000 * 120.00110 * 25.00845 * 14 12 11 34 34 H 1.07999 * 119.23620 * 0.02623 * 18 17 15 35 35 H 1.08001 * 120.08675 * 359.96213 * 21 20 19 36 36 H 1.07998 * 119.45705 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.58388 * 179.97438 * 23 22 21 38 38 H 1.08004 * 120.19007 * 180.31207 * 24 23 22 39 39 H 1.07994 * 121.01703 * 359.97438 * 26 17 15 40 40 H 1.09004 * 110.36243 * 85.24351 * 27 9 7 41 41 H 1.09002 * 110.36564 * 322.92742 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1375 -2.5328 0.0005 11 6 -0.4483 -4.0441 -0.0260 12 6 0.8516 -4.6561 -0.6117 13 1 0.9834 -5.6855 -0.2785 14 7 0.8571 -4.5757 -2.0745 15 6 1.5885 -5.4492 -2.7945 16 8 2.2433 -6.3040 -2.2304 17 6 1.5945 -5.3678 -4.2699 18 6 0.8388 -4.3817 -4.9283 19 7 0.8256 -4.2874 -6.2329 20 6 1.5286 -5.1235 -7.0060 21 6 1.5003 -5.0054 -8.4059 22 6 2.2237 -5.8668 -9.1727 23 6 2.9965 -6.8709 -8.5930 24 6 3.0501 -7.0171 -7.2404 25 6 2.3162 -6.1452 -6.4180 26 6 2.3464 -6.2662 -5.0182 27 6 1.9336 -3.7311 -0.0005 28 1 -0.4851 0.8400 0.0004 29 1 -0.5582 -2.0522 -0.8827 30 1 -0.5536 -2.0845 0.9028 31 1 -1.2988 -4.2516 -0.6753 32 1 -0.6324 -4.4205 0.9803 33 1 0.3345 -3.8938 -2.5247 34 1 0.2557 -3.6859 -4.3434 35 1 0.9061 -4.2335 -8.8723 36 1 2.1974 -5.7710 -10.2481 37 1 3.5607 -7.5412 -9.2245 38 1 3.6565 -7.7959 -6.8019 39 1 2.9356 -7.0337 -4.5385 40 1 2.1672 -4.0417 1.0179 41 1 2.8328 -3.7405 -0.6166 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015760193.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:52 Heat of formation + Delta-G solvation = 48.916759 kcal Electronic energy + Delta-G solvation = -24692.083815 eV Core-core repulsion = 21151.512471 eV Total energy + Delta-G solvation = -3540.571344 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.10354 -39.52536 -37.46059 -36.92401 -33.87696 -33.59679 -32.04379 -30.73763 -30.26923 -29.16436 -27.34020 -25.02374 -24.27763 -24.17048 -22.31278 -21.33065 -20.12271 -19.93672 -18.45656 -17.96604 -17.27788 -16.78719 -16.08776 -15.62679 -15.01326 -14.82808 -14.65105 -14.42825 -14.23566 -14.03768 -13.80615 -13.65012 -13.30149 -13.11497 -12.49748 -12.04591 -11.99196 -11.94050 -11.85807 -11.71021 -10.98775 -10.91883 -10.77812 -10.68794 -10.43957 -10.12594 -10.07023 -9.97579 -9.70136 -9.48910 -9.06552 -8.79995 -8.58363 -8.49405 -6.84289 -5.73792 -3.06466 0.04205 0.42480 1.66612 2.42807 3.22617 3.33123 3.39240 3.45557 3.47377 3.93892 4.02212 4.33561 4.49008 4.50803 4.60604 4.62794 4.82050 4.86552 4.99568 5.19034 5.27653 5.42195 5.46401 5.52123 5.64983 5.68427 5.74192 5.80054 5.82096 6.04336 6.12192 6.15638 6.24986 6.33448 6.45717 6.46308 6.53543 6.65804 6.96455 7.51340 7.53514 7.66841 7.74831 7.78799 8.22623 8.36590 9.20324 9.80114 10.45369 11.38152 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.016318 B = 0.003345 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.461120 B = 8369.169740 C = 9307.122963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.175 3.825 11 C -0.154 4.154 12 C 0.127 3.873 13 H 0.093 0.907 14 N -0.695 5.695 15 C 0.563 3.437 16 O -0.545 6.545 17 C -0.185 4.185 18 C 0.167 3.833 19 N -0.475 5.475 20 C 0.140 3.860 21 C -0.097 4.097 22 C -0.095 4.095 23 C -0.123 4.123 24 C -0.085 4.085 25 C -0.114 4.114 26 C 0.009 3.991 27 C 0.125 3.875 28 H 0.251 0.749 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.403 0.597 34 H 0.165 0.835 35 H 0.137 0.863 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.153 0.847 40 H 0.029 0.971 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.278 -14.393 -15.295 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.050 3.950 11 C -0.193 4.193 12 C 0.022 3.978 13 H 0.111 0.889 14 N -0.345 5.345 15 C 0.348 3.652 16 O -0.424 6.424 17 C -0.191 4.191 18 C -0.007 4.007 19 N -0.182 5.182 20 C 0.019 3.981 21 C -0.116 4.116 22 C -0.115 4.115 23 C -0.141 4.141 24 C -0.104 4.104 25 C -0.116 4.116 26 C -0.018 4.018 27 C -0.002 4.002 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.239 0.761 34 H 0.182 0.818 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.171 0.829 40 H 0.047 0.953 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.210 -14.123 -15.370 20.908 hybrid contribution 0.678 0.767 0.279 1.061 sum 1.888 -13.355 -15.091 20.240 Atomic orbital electron populations 1.69947 1.04801 1.24906 1.57398 1.24767 0.95726 0.97582 1.02340 0.86061 0.78763 0.83830 0.77224 1.20572 1.21772 1.21778 1.19096 0.90457 0.82351 1.43407 0.90507 1.44492 1.01467 0.99876 1.87265 1.21190 0.84573 0.87895 1.01360 1.23240 0.95610 1.00055 1.00384 1.22208 0.97657 0.99675 0.78264 0.88927 1.45770 1.47873 1.33220 1.07608 1.17900 0.79721 0.81626 0.85904 1.90751 1.42909 1.36658 1.72055 1.21056 1.02948 1.00070 0.94984 1.23172 0.93267 0.93871 0.90385 1.67993 1.19768 1.24498 1.05988 1.19055 0.93279 0.91355 0.94387 1.20853 0.99830 0.99948 0.90941 1.20973 0.95660 0.94440 1.00400 1.20934 0.99553 0.98669 0.94976 1.21074 0.97700 0.97939 0.93704 1.18844 1.00483 0.98390 0.93887 1.21949 0.92725 0.95436 0.91687 1.21949 0.94739 0.86374 0.97172 0.93827 0.93528 0.93667 0.91508 0.90793 0.76140 0.81784 0.84469 0.85166 0.85349 0.84903 0.82930 0.95295 0.93915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.35 10.31 55.49 0.57 -25.78 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.22 -6.18 10.28 -15.06 -0.15 -6.34 16 8 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 9 N -0.60 -14.91 3.39 -170.07 -0.58 -15.48 16 10 C 0.17 3.97 5.36 -3.06 -0.02 3.95 16 11 C -0.15 -2.64 6.55 -24.90 -0.16 -2.80 16 12 C 0.13 2.21 3.43 -65.78 -0.23 1.99 16 13 H 0.09 1.55 7.54 -51.93 -0.39 1.16 16 14 N -0.70 -11.21 5.14 -52.69 -0.27 -11.48 16 15 C 0.56 9.12 7.77 -12.37 -0.10 9.02 16 16 O -0.54 -10.16 16.02 5.31 0.09 -10.08 16 17 C -0.19 -2.61 5.89 -104.83 -0.62 -3.23 16 18 C 0.17 2.28 10.68 -17.10 -0.18 2.10 16 19 N -0.48 -6.73 10.30 -10.67 -0.11 -6.84 16 20 C 0.14 1.80 6.61 -84.79 -0.56 1.24 16 21 C -0.10 -0.99 9.97 -39.48 -0.39 -1.39 16 22 C -0.09 -0.75 9.94 -39.93 -0.40 -1.14 16 23 C -0.12 -0.93 9.96 -39.92 -0.40 -1.33 16 24 C -0.09 -0.77 9.77 -39.46 -0.39 -1.15 16 25 C -0.11 -1.35 5.74 -106.82 -0.61 -1.96 16 26 C 0.01 0.11 9.46 -38.43 -0.36 -0.25 16 27 C 0.12 2.61 6.93 -2.53 -0.02 2.59 16 28 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.05 1.15 7.38 -51.93 -0.38 0.76 16 30 H 0.05 1.16 7.51 -51.93 -0.39 0.77 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.40 6.11 6.69 -40.82 -0.27 5.84 16 34 H 0.17 2.01 6.37 -52.49 -0.33 1.67 16 35 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 36 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 37 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 38 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 39 H 0.15 1.74 7.70 -52.49 -0.40 1.33 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 344.01 15.07 5.18 5.18 Total: -1.00 -32.57 344.01 -9.92 -42.50 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.10 Total: 4.00 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -4.68 Total: 0.97 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.39 Total: -59.58 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.57 -9.92 -42.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015760193.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.414 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds