Wall clock time and date at job start Fri Apr 10 2020 22:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 119.99880 * 2 1 4 4 H 1.48500 * 109.47481 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47275 * 300.00490 * 3 2 1 6 6 H 1.48495 * 109.47389 * 60.00138 * 3 2 1 7 7 C 1.38811 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00101 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00211 * 359.97438 * 7 2 1 10 10 C 1.47029 * 125.64514 * 359.97438 * 9 7 2 11 11 C 1.54318 * 107.26944 * 178.98561 * 10 9 7 12 12 C 1.55157 * 102.94344 * 337.80369 * 11 10 9 13 13 H 1.09001 * 111.00138 * 153.61377 * 12 11 10 14 14 N 1.46501 * 111.00226 * 277.42628 * 12 11 10 15 15 C 1.34772 * 119.99657 * 204.99742 * 14 12 11 16 16 O 1.21565 * 120.00668 * 0.02562 * 15 14 12 17 17 C 1.47766 * 119.99989 * 180.02562 * 15 14 12 18 18 C 1.40604 * 120.26308 * 359.97438 * 17 15 14 19 19 N 1.30804 * 121.53674 * 180.02562 * 18 17 15 20 20 C 1.33827 * 121.71810 * 0.04559 * 19 18 17 21 21 C 1.40523 * 120.82389 * 179.97438 * 20 19 18 22 22 C 1.36133 * 119.81871 * 179.97438 * 21 20 19 23 23 C 1.39339 * 121.08751 * 0.04020 * 22 21 20 24 24 C 1.36148 * 120.83292 * 359.93693 * 23 22 21 25 25 C 1.40545 * 119.61625 * 0.04210 * 24 23 22 26 26 C 1.39006 * 120.27163 * 180.02562 * 17 15 14 27 27 C 1.47425 * 125.65352 * 180.02562 * 9 7 2 28 28 H 0.96999 * 120.00698 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.88217 * 59.56343 * 10 9 7 30 30 H 1.09007 * 109.87587 * 298.40030 * 10 9 7 31 31 H 1.08998 * 110.72121 * 219.43978 * 11 10 9 32 32 H 1.09004 * 110.87234 * 96.23849 * 11 10 9 33 33 H 0.97000 * 120.00110 * 25.00845 * 14 12 11 34 34 H 1.07999 * 119.23620 * 0.02623 * 18 17 15 35 35 H 1.08001 * 120.08675 * 359.96213 * 21 20 19 36 36 H 1.07998 * 119.45705 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.58388 * 179.97438 * 23 22 21 38 38 H 1.08004 * 120.19007 * 180.31207 * 24 23 22 39 39 H 1.07994 * 121.01703 * 359.97438 * 26 17 15 40 40 H 1.09004 * 110.36243 * 85.24351 * 27 9 7 41 41 H 1.09002 * 110.36564 * 322.92742 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1375 -2.5328 0.0005 11 6 -0.4483 -4.0441 -0.0260 12 6 0.8516 -4.6561 -0.6117 13 1 0.9834 -5.6855 -0.2785 14 7 0.8571 -4.5757 -2.0745 15 6 1.5885 -5.4492 -2.7945 16 8 2.2433 -6.3040 -2.2304 17 6 1.5945 -5.3678 -4.2699 18 6 0.8388 -4.3817 -4.9283 19 7 0.8256 -4.2874 -6.2329 20 6 1.5286 -5.1235 -7.0060 21 6 1.5003 -5.0054 -8.4059 22 6 2.2237 -5.8668 -9.1727 23 6 2.9965 -6.8709 -8.5930 24 6 3.0501 -7.0171 -7.2404 25 6 2.3162 -6.1452 -6.4180 26 6 2.3464 -6.2662 -5.0182 27 6 1.9336 -3.7311 -0.0005 28 1 -0.4851 0.8400 0.0004 29 1 -0.5582 -2.0522 -0.8827 30 1 -0.5536 -2.0845 0.9028 31 1 -1.2988 -4.2516 -0.6753 32 1 -0.6324 -4.4205 0.9803 33 1 0.3345 -3.8938 -2.5247 34 1 0.2557 -3.6859 -4.3434 35 1 0.9061 -4.2335 -8.8723 36 1 2.1974 -5.7710 -10.2481 37 1 3.5607 -7.5412 -9.2245 38 1 3.6565 -7.7959 -6.8019 39 1 2.9356 -7.0337 -4.5385 40 1 2.1672 -4.0417 1.0179 41 1 2.8328 -3.7405 -0.6166 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015760193.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:50 Heat of formation + Delta-G solvation = 28.347993 kcal Electronic energy + Delta-G solvation = -24692.975744 eV Core-core repulsion = 21151.512471 eV Total energy + Delta-G solvation = -3541.463272 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.04456 -40.77996 -38.92885 -37.89771 -35.49495 -34.52096 -33.75481 -31.83721 -31.07808 -30.85469 -28.97425 -26.61478 -25.57645 -25.12877 -23.12005 -22.56674 -21.90797 -21.38808 -19.51899 -18.95106 -18.75826 -18.17187 -17.26276 -16.77275 -16.61070 -16.23114 -15.70727 -15.61498 -15.43245 -15.23850 -15.19558 -14.75456 -14.43383 -14.14831 -14.03293 -13.83510 -13.56147 -12.90917 -12.83274 -12.78631 -12.73902 -12.44368 -12.30273 -12.11133 -11.99827 -11.81743 -11.63161 -11.58679 -11.31155 -10.72732 -10.56127 -10.18785 -9.84710 -9.31566 -8.85770 -7.85165 -5.18966 -0.83372 -0.45241 0.82520 1.45314 1.45856 1.48680 1.55724 2.05393 2.21758 2.48877 3.03965 3.12291 3.33993 3.52912 3.56359 3.67391 3.68260 3.76049 3.81671 3.97398 4.07523 4.21389 4.30245 4.33714 4.41588 4.67158 4.69502 4.74066 4.78165 4.89973 4.93067 4.98814 5.04376 5.05176 5.33671 5.39937 5.45005 5.45119 5.51827 5.68301 5.77910 5.83788 6.20430 6.45762 6.73089 7.08408 7.12299 7.77639 8.41386 9.24810 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.016318 B = 0.003345 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.461120 B = 8369.169740 C = 9307.122963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.059 4.059 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.073 0.927 9 N -0.621 5.621 10 C 0.182 3.818 11 C -0.134 4.134 12 C 0.140 3.860 13 H 0.109 0.891 14 N -0.695 5.695 15 C 0.568 3.432 16 O -0.572 6.572 17 C -0.206 4.206 18 C 0.158 3.842 19 N -0.497 5.497 20 C 0.117 3.883 21 C -0.121 4.121 22 C -0.076 4.076 23 C -0.114 4.114 24 C -0.091 4.091 25 C -0.128 4.128 26 C 0.015 3.985 27 C 0.122 3.878 28 H 0.247 0.753 29 H 0.021 0.979 30 H 0.010 0.990 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.407 0.593 34 H 0.168 0.832 35 H 0.142 0.858 36 H 0.166 0.834 37 H 0.166 0.834 38 H 0.158 0.842 39 H 0.163 0.837 40 H 0.036 0.964 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.209 -16.197 -17.502 23.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.252 4.252 3 Si 0.801 3.199 4 H -0.197 1.197 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.369 4.369 8 H 0.091 0.909 9 N -0.348 5.348 10 C 0.057 3.943 11 C -0.173 4.173 12 C 0.035 3.965 13 H 0.127 0.873 14 N -0.344 5.344 15 C 0.355 3.645 16 O -0.453 6.453 17 C -0.211 4.211 18 C -0.016 4.016 19 N -0.204 5.204 20 C -0.004 4.004 21 C -0.140 4.140 22 C -0.096 4.096 23 C -0.132 4.132 24 C -0.109 4.109 25 C -0.130 4.130 26 C -0.012 4.012 27 C -0.005 4.005 28 H 0.056 0.944 29 H 0.039 0.961 30 H 0.028 0.972 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.243 0.757 34 H 0.185 0.815 35 H 0.160 0.840 36 H 0.183 0.817 37 H 0.184 0.816 38 H 0.175 0.825 39 H 0.180 0.820 40 H 0.053 0.947 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.145 -15.947 -17.589 23.839 hybrid contribution 0.479 1.248 0.790 1.553 sum 2.624 -14.700 -16.799 22.476 Atomic orbital electron populations 1.70140 1.05876 1.25129 1.58218 1.25501 0.96607 1.00463 1.02661 0.85103 0.78021 0.79982 0.76776 1.19673 1.21834 1.21843 1.19368 0.90673 0.83850 1.42977 0.90928 1.44716 1.02491 1.00524 1.87051 1.20978 0.83378 0.91481 0.98415 1.23096 0.96370 0.95507 1.02288 1.22042 0.96117 0.99463 0.78890 0.87299 1.45754 1.48068 1.33466 1.07157 1.18152 0.78764 0.80840 0.86724 1.90723 1.44037 1.37738 1.72797 1.20858 1.04980 1.01645 0.93617 1.23186 0.93696 0.94144 0.90558 1.67978 1.20778 1.25533 1.06153 1.19507 0.93658 0.91701 0.95515 1.21069 1.01403 1.01441 0.90085 1.21450 0.93336 0.92765 1.02028 1.21428 0.98553 0.98392 0.94784 1.21422 0.97371 0.97844 0.94303 1.19059 1.01144 0.99034 0.93765 1.22153 0.91848 0.94875 0.92300 1.22081 0.95276 0.85586 0.97537 0.94352 0.96098 0.97162 0.88782 0.88821 0.75697 0.81507 0.84021 0.81672 0.81605 0.82486 0.81966 0.94674 0.95372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.47 10.31 21.65 0.22 -55.24 16 2 C -0.06 -3.33 5.49 84.86 0.47 -2.86 16 3 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 6 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.24 -13.48 10.28 84.03 0.86 -12.61 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.62 -31.33 3.39 -691.97 -2.35 -33.67 16 10 C 0.18 8.47 5.36 86.73 0.47 8.94 16 11 C -0.13 -4.45 6.55 31.78 0.21 -4.24 16 12 C 0.14 4.78 3.43 46.38 0.16 4.94 16 13 H 0.11 3.45 7.54 -2.39 -0.02 3.43 16 14 N -0.70 -22.43 5.14 -438.90 -2.26 -24.68 16 15 C 0.57 18.49 7.77 86.76 0.67 19.17 16 16 O -0.57 -21.24 16.02 -3.92 -0.06 -21.30 16 17 C -0.21 -5.89 5.89 -20.00 -0.12 -6.01 16 18 C 0.16 4.47 10.68 85.42 0.91 5.38 16 19 N -0.50 -14.41 10.30 -187.68 -1.93 -16.34 16 20 C 0.12 2.95 6.61 40.27 0.27 3.21 16 21 C -0.12 -2.30 9.97 22.34 0.22 -2.08 16 22 C -0.08 -0.92 9.94 22.04 0.22 -0.70 16 23 C -0.11 -1.24 9.96 22.05 0.22 -1.02 16 24 C -0.09 -1.36 9.77 22.35 0.22 -1.14 16 25 C -0.13 -2.88 5.74 -21.29 -0.12 -3.01 16 26 C 0.01 0.37 9.46 23.01 0.22 0.58 16 27 C 0.12 5.11 6.93 86.85 0.60 5.71 16 28 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 29 H 0.02 1.06 7.38 -2.39 -0.02 1.05 16 30 H 0.01 0.54 7.51 -2.38 -0.02 0.52 16 31 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.41 12.55 6.69 -92.71 -0.62 11.93 16 34 H 0.17 4.34 6.37 -2.91 -0.02 4.32 16 35 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 37 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 38 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 39 H 0.16 3.57 7.70 -2.91 -0.02 3.55 16 40 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -72.64 344.01 1.56 -71.08 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.44 Total: 17.79 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: 5.47 Total: 14.27 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -6.32 Total: -129.95 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.06 Total: -21.30 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -72.64 1.56 -71.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015760193.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.429 kcal (2) G-P(sol) polarization free energy of solvation -72.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds