Wall clock time and date at job start Fri Apr 10 2020 22:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00272 * 2 1 4 4 H 1.48497 * 109.47148 * 270.00610 * 3 2 1 5 5 H 1.48502 * 109.47035 * 30.00320 * 3 2 1 6 6 H 1.48502 * 109.47140 * 150.00289 * 3 2 1 7 7 C 1.38818 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00178 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99824 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64743 * 359.97438 * 9 7 2 11 11 C 1.54325 * 107.26573 * 178.98811 * 10 9 7 12 12 C 1.55148 * 102.94715 * 337.80643 * 11 10 9 13 13 H 1.08998 * 111.00854 * 277.39027 * 12 11 10 14 14 N 1.46499 * 111.00425 * 153.57560 * 12 11 10 15 15 C 1.34781 * 120.00020 * 155.00059 * 14 12 11 16 16 O 1.21551 * 119.99967 * 0.02562 * 15 14 12 17 17 C 1.47881 * 120.00164 * 179.97438 * 15 14 12 18 18 C 1.40573 * 119.70802 * 0.20633 * 17 15 14 19 19 C 1.35808 * 120.73806 * 180.23349 * 18 17 15 20 20 C 1.40549 * 119.98159 * 359.53751 * 19 18 17 21 21 C 1.40822 * 121.13466 * 180.23263 * 20 19 18 22 22 C 1.36549 * 118.19813 * 180.02562 * 21 20 19 23 23 C 1.39425 * 119.94185 * 359.97438 * 22 21 20 24 24 N 1.31015 * 121.70926 * 359.97438 * 23 22 21 25 25 C 1.33748 * 121.35442 * 0.02562 * 24 23 22 26 26 C 1.38406 * 119.70396 * 180.02562 * 17 15 14 27 27 C 1.47425 * 125.64598 * 180.02562 * 9 7 2 28 28 H 0.96994 * 120.00040 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.88248 * 59.57394 * 10 9 7 30 30 H 1.08995 * 109.88271 * 298.40387 * 10 9 7 31 31 H 1.09002 * 110.71918 * 219.43885 * 11 10 9 32 32 H 1.09001 * 110.71801 * 96.17481 * 11 10 9 33 33 H 0.96999 * 120.00575 * 334.99985 * 14 12 11 34 34 H 1.08002 * 119.63310 * 0.02646 * 18 17 15 35 35 H 1.08002 * 120.01314 * 179.81937 * 19 18 17 36 36 H 1.07993 * 120.89922 * 0.04681 * 21 20 19 37 37 H 1.08000 * 120.03011 * 179.97438 * 22 21 20 38 38 H 1.07997 * 119.14305 * 179.97438 * 23 22 21 39 39 H 1.07998 * 120.23625 * 0.02570 * 26 17 15 40 40 H 1.08994 * 110.36770 * 85.24391 * 27 9 7 41 41 H 1.08999 * 110.36534 * 322.91699 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1375 -2.5327 0.0005 11 6 -0.4484 -4.0441 -0.0259 12 6 0.8515 -4.6562 -0.6115 13 1 0.8554 -4.5971 -1.6998 14 7 1.0290 -6.0394 -0.1629 15 6 1.7587 -6.8990 -0.9013 16 8 2.2699 -6.5263 -1.9393 17 6 1.9383 -8.2952 -0.4483 18 6 1.3417 -8.7205 0.7514 19 6 1.4970 -9.9966 1.1895 20 6 2.2531 -10.9108 0.4360 21 6 2.4257 -12.2410 0.8649 22 6 3.1726 -13.0782 0.0865 23 6 3.7389 -12.6073 -1.0973 24 7 3.5755 -11.3694 -1.4941 25 6 2.8558 -10.4984 -0.7784 26 6 2.6893 -9.1725 -1.2111 27 6 1.9335 -3.7312 -0.0005 28 1 -0.4850 0.8400 0.0004 29 1 -0.5582 -2.0522 -0.8828 30 1 -0.5537 -2.0844 0.9026 31 1 -1.2989 -4.2516 -0.6753 32 1 -0.6309 -4.4180 0.9816 33 1 0.6214 -6.3368 0.6656 34 1 0.7560 -8.0239 1.3329 35 1 1.0358 -10.3101 2.1144 36 1 1.9793 -12.5895 1.7844 37 1 3.3244 -14.1042 0.3875 38 1 4.3275 -13.2804 -1.7029 39 1 3.1431 -8.8403 -2.1331 40 1 2.1671 -4.0418 1.0177 41 1 2.8326 -3.7406 -0.6167 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015870619.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:54 Heat of formation + Delta-G solvation = 27.213773 kcal Electronic energy + Delta-G solvation = -24161.489860 eV Core-core repulsion = 20619.977405 eV Total energy + Delta-G solvation = -3541.512456 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.94969 -40.91057 -39.03343 -37.70914 -35.74040 -34.47014 -33.86512 -31.85599 -31.03971 -30.91007 -28.91446 -26.73565 -25.56411 -24.86427 -23.21861 -22.45661 -21.99423 -21.70793 -19.66625 -18.94525 -18.44592 -17.93324 -17.32114 -17.04301 -16.65988 -16.21448 -15.87174 -15.50614 -15.48526 -15.27055 -14.99377 -14.58470 -14.49487 -14.18609 -13.98030 -13.90682 -13.72871 -12.99216 -12.94895 -12.80013 -12.72455 -12.53219 -12.42710 -12.14262 -12.04463 -11.83135 -11.60082 -11.55352 -11.15367 -10.73388 -10.48397 -10.23853 -9.82193 -9.33251 -8.93649 -7.87952 -5.24099 -0.78118 -0.35896 0.86648 1.43939 1.45122 1.47170 1.55591 1.94424 2.24560 2.48788 3.09097 3.26191 3.30711 3.51614 3.59623 3.65317 3.82029 3.86677 3.96308 4.02397 4.05283 4.07801 4.18188 4.31641 4.57064 4.58760 4.70198 4.73942 4.84810 4.87904 4.91683 4.97229 5.05431 5.09895 5.18063 5.32030 5.40344 5.44909 5.53864 5.63375 5.72689 5.78621 6.17147 6.47146 6.91997 7.07660 7.12313 7.72824 8.36086 9.22115 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.036116 B = 0.002387 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.099809 B =11725.711638 C =12029.077920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.980 3.020 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.270 1.270 7 C -0.247 4.247 8 H 0.076 0.924 9 N -0.626 5.626 10 C 0.183 3.817 11 C -0.127 4.127 12 C 0.144 3.856 13 H 0.075 0.925 14 N -0.690 5.690 15 C 0.553 3.447 16 O -0.581 6.581 17 C -0.118 4.118 18 C -0.098 4.098 19 C -0.081 4.081 20 C -0.101 4.101 21 C -0.057 4.057 22 C -0.163 4.163 23 C 0.126 3.874 24 N -0.514 5.514 25 C 0.092 3.908 26 C -0.051 4.051 27 C 0.127 3.873 28 H 0.249 0.751 29 H 0.013 0.987 30 H 0.020 0.980 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.418 0.582 34 H 0.162 0.838 35 H 0.180 0.820 36 H 0.181 0.819 37 H 0.179 0.821 38 H 0.186 0.814 39 H 0.121 0.879 40 H 0.036 0.964 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.356 -30.880 6.998 31.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.808 3.192 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.195 1.195 7 C -0.376 4.376 8 H 0.094 0.906 9 N -0.353 5.353 10 C 0.058 3.942 11 C -0.165 4.165 12 C 0.038 3.962 13 H 0.093 0.907 14 N -0.342 5.342 15 C 0.341 3.659 16 O -0.462 6.462 17 C -0.123 4.123 18 C -0.116 4.116 19 C -0.100 4.100 20 C -0.103 4.103 21 C -0.082 4.082 22 C -0.182 4.182 23 C -0.047 4.047 24 N -0.223 5.223 25 C -0.027 4.027 26 C -0.071 4.071 27 C 0.001 3.999 28 H 0.058 0.942 29 H 0.031 0.969 30 H 0.039 0.961 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.257 0.743 34 H 0.179 0.821 35 H 0.198 0.802 36 H 0.199 0.801 37 H 0.197 0.803 38 H 0.203 0.797 39 H 0.139 0.861 40 H 0.053 0.947 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 0.995 -29.970 5.508 30.488 hybrid contribution 0.112 1.189 0.410 1.263 sum 1.107 -28.780 5.918 29.403 Atomic orbital electron populations 1.70148 1.06104 1.25484 1.57913 1.25650 0.96750 1.00921 1.02283 0.85060 0.77673 0.79007 0.77462 1.21433 1.21487 1.19524 1.19413 0.90881 0.83759 1.43587 0.90569 1.44676 1.02762 1.00646 1.87201 1.20964 0.83327 0.91399 0.98495 1.23013 0.95998 0.95167 1.02340 1.21863 0.95952 0.79706 0.98719 0.90693 1.45607 1.52364 1.09773 1.26497 1.18706 0.77875 0.86018 0.83267 1.90781 1.49950 1.79386 1.26091 1.19783 1.02193 0.92218 0.98074 1.21238 0.98597 0.97910 0.93832 1.21346 0.96578 0.91736 1.00295 1.19313 0.99007 0.96977 0.95052 1.22017 0.95295 0.90437 1.00465 1.22418 0.97577 1.03205 0.95006 1.23673 0.94985 0.91117 0.94941 1.68003 1.15935 1.04903 1.33482 1.18846 0.97210 0.93484 0.93192 1.21158 0.95678 0.91315 0.98992 1.21937 0.95073 0.85353 0.97570 0.94151 0.96870 0.96142 0.89143 0.88506 0.74270 0.82099 0.80226 0.80128 0.80334 0.79687 0.86115 0.94672 0.95894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.39 10.31 21.65 0.22 -57.17 16 2 C -0.06 -3.66 5.49 84.86 0.47 -3.19 16 3 Si 0.98 46.89 29.55 68.60 2.03 48.92 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.25 -14.48 10.28 84.04 0.86 -13.61 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 N -0.63 -33.41 3.39 -691.99 -2.35 -35.76 16 10 C 0.18 8.97 5.37 86.73 0.47 9.44 16 11 C -0.13 -4.31 6.60 31.78 0.21 -4.10 16 12 C 0.14 5.22 3.42 46.38 0.16 5.38 16 13 H 0.07 3.13 7.54 -2.39 -0.02 3.11 16 14 N -0.69 -19.09 5.15 -438.80 -2.26 -21.35 16 15 C 0.55 17.58 7.77 86.80 0.67 18.26 16 16 O -0.58 -24.31 15.94 -3.88 -0.06 -24.37 16 17 C -0.12 -2.96 5.87 -20.11 -0.12 -3.08 16 18 C -0.10 -1.55 9.44 22.28 0.21 -1.33 16 19 C -0.08 -0.98 9.74 22.27 0.22 -0.76 16 20 C -0.10 -1.63 5.75 -21.23 -0.12 -1.75 16 21 C -0.06 -0.50 9.88 22.51 0.22 -0.27 16 22 C -0.16 -1.28 10.03 22.16 0.22 -1.06 16 23 C 0.13 1.74 11.15 85.10 0.95 2.69 16 24 N -0.51 -12.01 10.34 -188.65 -1.95 -13.96 16 25 C 0.09 2.21 6.60 40.25 0.27 2.47 16 26 C -0.05 -1.44 9.56 22.85 0.22 -1.22 16 27 C 0.13 5.62 6.93 86.86 0.60 6.22 16 28 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.01 0.72 7.38 -2.39 -0.02 0.71 16 30 H 0.02 1.09 7.51 -2.39 -0.02 1.07 16 31 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.10 2.66 8.00 -2.39 -0.02 2.64 16 33 H 0.42 7.92 6.55 -92.71 -0.61 7.31 16 34 H 0.16 1.52 6.34 -2.91 -0.02 1.50 16 35 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 36 H 0.18 0.11 8.06 -2.91 -0.02 0.09 16 37 H 0.18 -0.04 8.06 -2.91 -0.02 -0.06 16 38 H 0.19 1.34 8.06 -2.91 -0.02 1.31 16 39 H 0.12 3.92 7.60 -2.91 -0.02 3.90 16 40 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -83.19 343.59 1.59 -81.60 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 0.45 Total: 8.01 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 5.50 Total: 14.07 kcal Atomic # 7 Polarization: -121.89 SS G_CDS: -6.33 Total: -128.23 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.06 Total: -24.37 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -83.19 1.59 -81.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015870619.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.815 kcal (2) G-P(sol) polarization free energy of solvation -83.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds