Wall clock time and date at job start Fri Apr 10 2020 22:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99800 * 2 1 4 4 H 1.48498 * 109.47132 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47063 * 299.99733 * 3 2 1 6 6 H 1.48499 * 109.47379 * 60.00172 * 3 2 1 7 7 C 1.38818 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.47025 * 125.64977 * 359.97438 * 9 7 2 11 11 C 1.54318 * 107.27181 * 178.98184 * 10 9 7 12 12 C 1.55154 * 102.94364 * 337.80956 * 11 10 9 13 13 H 1.09000 * 111.00679 * 153.61459 * 12 11 10 14 14 N 1.46500 * 111.00530 * 277.42319 * 12 11 10 15 15 C 1.34773 * 120.00431 * 205.00287 * 14 12 11 16 16 O 1.21553 * 119.99919 * 359.97438 * 15 14 12 17 17 C 1.47884 * 119.99999 * 179.72339 * 15 14 12 18 18 C 1.40567 * 119.70595 * 0.27465 * 17 15 14 19 19 C 1.35821 * 120.73488 * 179.97438 * 18 17 15 20 20 C 1.40540 * 119.98157 * 0.02562 * 19 18 17 21 21 C 1.40821 * 121.13599 * 179.97438 * 20 19 18 22 22 C 1.36549 * 118.20095 * 180.02562 * 21 20 19 23 23 C 1.39423 * 119.94244 * 359.97438 * 22 21 20 24 24 N 1.31019 * 121.70846 * 0.02562 * 23 22 21 25 25 C 1.33749 * 121.35197 * 359.95256 * 24 23 22 26 26 C 1.38407 * 119.70277 * 179.97438 * 17 15 14 27 27 C 1.47420 * 125.64843 * 180.02562 * 9 7 2 28 28 H 0.96998 * 120.00005 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.88237 * 59.56880 * 10 9 7 30 30 H 1.08998 * 109.88066 * 298.40581 * 10 9 7 31 31 H 1.09000 * 110.72298 * 219.43938 * 11 10 9 32 32 H 1.09008 * 110.87037 * 96.24276 * 11 10 9 33 33 H 0.97000 * 119.99456 * 24.99849 * 14 12 11 34 34 H 1.07998 * 119.63454 * 359.97438 * 18 17 15 35 35 H 1.07995 * 120.00809 * 179.97438 * 19 18 17 36 36 H 1.08003 * 120.89625 * 0.04443 * 21 20 19 37 37 H 1.08003 * 120.03189 * 180.02562 * 22 21 20 38 38 H 1.07994 * 119.14509 * 179.97438 * 23 22 21 39 39 H 1.07999 * 120.23873 * 359.97438 * 26 17 15 40 40 H 1.09006 * 110.36761 * 85.24770 * 27 9 7 41 41 H 1.08996 * 110.37146 * 322.92312 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1374 -2.5328 0.0005 11 6 -0.4483 -4.0441 -0.0261 12 6 0.8516 -4.6561 -0.6117 13 1 0.9834 -5.6855 -0.2786 14 7 0.8573 -4.5757 -2.0745 15 6 1.5886 -5.4492 -2.7946 16 8 2.2439 -6.3035 -2.2303 17 6 1.5894 -5.3719 -4.2714 18 6 0.8297 -4.3813 -4.9175 19 6 0.8157 -4.2909 -6.2726 20 6 1.5659 -5.1944 -7.0445 21 6 1.5686 -5.1232 -8.4510 22 6 2.3186 -6.0316 -9.1416 23 6 3.0543 -6.9945 -8.4522 24 7 3.0497 -7.0581 -7.1435 25 6 2.3370 -6.1983 -6.4075 26 6 2.3431 -6.2717 -5.0048 27 6 1.9336 -3.7311 -0.0005 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5582 -2.0522 -0.8828 30 1 -0.5536 -2.0845 0.9027 31 1 -1.2989 -4.2515 -0.6754 32 1 -0.6325 -4.4205 0.9802 33 1 0.3346 -3.8938 -2.5247 34 1 0.2508 -3.6842 -4.3298 35 1 0.2276 -3.5254 -6.7568 36 1 0.9933 -4.3703 -8.9692 37 1 2.3424 -6.0037 -10.2210 38 1 3.6426 -7.7069 -9.0113 39 1 2.9288 -7.0273 -4.5024 40 1 2.1671 -4.0418 1.0179 41 1 2.8327 -3.7406 -0.6166 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015870620.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:01 Heat of formation + Delta-G solvation = 49.715995 kcal Electronic energy + Delta-G solvation = -24680.389281 eV Core-core repulsion = 21139.852595 eV Total energy + Delta-G solvation = -3540.536686 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.07778 -39.63988 -37.49806 -36.66021 -33.86429 -33.67528 -32.01701 -30.74690 -30.19560 -29.17323 -27.35446 -25.14263 -24.28955 -24.06392 -22.37105 -21.26088 -20.12055 -19.92727 -18.57247 -17.66037 -17.09605 -16.84140 -16.17053 -15.79125 -14.90478 -14.69116 -14.67357 -14.36129 -14.22446 -14.15600 -13.75880 -13.71307 -13.30863 -13.19109 -12.51078 -12.05184 -11.97639 -11.88817 -11.81402 -11.67374 -10.99031 -10.92675 -10.80016 -10.73421 -10.39781 -10.13161 -9.97652 -9.79281 -9.70774 -9.69172 -9.04979 -8.77737 -8.57296 -8.46330 -6.84782 -5.74831 -3.07237 0.06462 0.43992 1.68822 2.37117 3.29379 3.36301 3.37936 3.44243 3.46114 3.95509 4.07081 4.32231 4.45286 4.48052 4.60064 4.70539 4.78426 4.93853 5.00464 5.22906 5.29676 5.43148 5.45799 5.53403 5.65226 5.68493 5.75059 5.81159 5.83154 6.06751 6.13990 6.18683 6.25854 6.34664 6.46187 6.48047 6.54118 6.67815 6.99964 7.50391 7.53099 7.64470 7.76672 7.80894 8.21754 8.42973 9.19557 9.79303 10.44916 11.37148 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.016502 B = 0.003315 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.354509 B = 8444.624965 C = 9361.117846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.175 3.825 11 C -0.154 4.154 12 C 0.127 3.873 13 H 0.093 0.907 14 N -0.695 5.695 15 C 0.555 3.445 16 O -0.542 6.542 17 C -0.108 4.108 18 C -0.085 4.085 19 C -0.102 4.102 20 C -0.088 4.088 21 C -0.060 4.060 22 C -0.172 4.172 23 C 0.126 3.874 24 N -0.466 5.466 25 C 0.116 3.884 26 C -0.027 4.027 27 C 0.124 3.876 28 H 0.251 0.749 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.403 0.597 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.160 0.840 39 H 0.151 0.849 40 H 0.030 0.970 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.140 -11.312 -16.989 20.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.051 3.949 11 C -0.193 4.193 12 C 0.022 3.978 13 H 0.111 0.889 14 N -0.345 5.345 15 C 0.342 3.658 16 O -0.421 6.421 17 C -0.113 4.113 18 C -0.104 4.104 19 C -0.120 4.120 20 C -0.090 4.090 21 C -0.086 4.086 22 C -0.192 4.192 23 C -0.047 4.047 24 N -0.174 5.174 25 C -0.005 4.005 26 C -0.047 4.047 27 C -0.003 4.003 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.239 0.761 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.177 0.823 39 H 0.168 0.832 40 H 0.047 0.953 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.267 -12.285 -15.984 20.161 hybrid contribution -0.313 2.064 -0.713 2.206 sum -0.580 -10.222 -16.696 19.585 Atomic orbital electron populations 1.69957 1.04798 1.24846 1.57569 1.24770 0.95729 0.97569 1.02436 0.86056 0.78795 0.83811 0.77203 1.20548 1.21827 1.21777 1.19111 0.90485 0.82365 1.43190 0.90484 1.44491 1.01470 0.99903 1.87233 1.21178 0.84582 0.87907 1.01282 1.23236 0.95635 1.00036 1.00373 1.22197 0.97553 0.99665 0.78421 0.88947 1.45765 1.47955 1.33346 1.07480 1.18119 0.79757 0.81611 0.86342 1.90757 1.42627 1.36548 1.72130 1.20016 0.99906 0.97631 0.93793 1.21088 0.97459 0.96807 0.94997 1.20884 0.99008 0.98507 0.93638 1.18964 0.98581 0.97008 0.94445 1.21525 0.96725 0.97786 0.92575 1.21946 0.98705 0.96819 1.01711 1.22995 0.95505 0.96199 0.90027 1.68026 1.18115 1.23632 1.07590 1.18765 0.95219 0.92679 0.93827 1.21226 0.95498 0.97209 0.90724 1.21955 0.94793 0.86331 0.97194 0.93875 0.93621 0.93690 0.91571 0.90809 0.76145 0.84644 0.84542 0.84171 0.84419 0.82274 0.83183 0.95285 0.93866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.24 10.31 55.49 0.57 -25.67 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.22 -6.14 10.28 -15.06 -0.15 -6.29 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -14.97 3.39 -170.08 -0.58 -15.55 16 10 C 0.18 3.99 5.36 -3.07 -0.02 3.98 16 11 C -0.15 -2.67 6.55 -24.90 -0.16 -2.83 16 12 C 0.13 2.25 3.43 -65.78 -0.23 2.03 16 13 H 0.09 1.59 7.54 -51.93 -0.39 1.20 16 14 N -0.70 -11.46 5.14 -52.66 -0.27 -11.73 16 15 C 0.56 9.37 7.77 -12.31 -0.10 9.28 16 16 O -0.54 -10.66 15.94 5.32 0.08 -10.58 16 17 C -0.11 -1.56 5.87 -105.01 -0.62 -2.18 16 18 C -0.09 -1.03 9.44 -39.57 -0.37 -1.40 16 19 C -0.10 -1.07 9.74 -39.58 -0.39 -1.45 16 20 C -0.09 -0.99 5.75 -106.73 -0.61 -1.60 16 21 C -0.06 -0.50 9.88 -39.21 -0.39 -0.89 16 22 C -0.17 -1.26 10.03 -39.75 -0.40 -1.66 16 23 C 0.13 1.13 11.15 -17.46 -0.19 0.94 16 24 N -0.47 -5.88 10.34 -10.98 -0.11 -5.99 16 25 C 0.12 1.54 6.60 -84.87 -0.56 0.98 16 26 C -0.03 -0.39 9.56 -38.68 -0.37 -0.76 16 27 C 0.12 2.64 6.93 -2.53 -0.02 2.62 16 28 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.05 1.12 7.38 -51.92 -0.38 0.74 16 30 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 33 H 0.40 6.17 6.65 -40.82 -0.27 5.90 16 34 H 0.14 1.48 6.34 -52.49 -0.33 1.15 16 35 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 37 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 38 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.15 2.23 7.60 -52.49 -0.40 1.83 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 343.76 15.07 5.18 5.18 Total: -1.00 -33.10 343.76 -9.91 -43.01 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.10 Total: 4.05 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -4.67 Total: 0.40 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.39 Total: -58.94 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.10 -9.91 -43.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015870620.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.725 kcal (2) G-P(sol) polarization free energy of solvation -33.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds