Wall clock time and date at job start Fri Apr 10 2020 22:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99800 * 2 1 4 4 H 1.48498 * 109.47132 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47063 * 299.99733 * 3 2 1 6 6 H 1.48499 * 109.47379 * 60.00172 * 3 2 1 7 7 C 1.38818 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.47025 * 125.64977 * 359.97438 * 9 7 2 11 11 C 1.54318 * 107.27181 * 178.98184 * 10 9 7 12 12 C 1.55154 * 102.94364 * 337.80956 * 11 10 9 13 13 H 1.09000 * 111.00679 * 153.61459 * 12 11 10 14 14 N 1.46500 * 111.00530 * 277.42319 * 12 11 10 15 15 C 1.34773 * 120.00431 * 205.00287 * 14 12 11 16 16 O 1.21553 * 119.99919 * 359.97438 * 15 14 12 17 17 C 1.47884 * 119.99999 * 179.72339 * 15 14 12 18 18 C 1.40567 * 119.70595 * 0.27465 * 17 15 14 19 19 C 1.35821 * 120.73488 * 179.97438 * 18 17 15 20 20 C 1.40540 * 119.98157 * 0.02562 * 19 18 17 21 21 C 1.40821 * 121.13599 * 179.97438 * 20 19 18 22 22 C 1.36549 * 118.20095 * 180.02562 * 21 20 19 23 23 C 1.39423 * 119.94244 * 359.97438 * 22 21 20 24 24 N 1.31019 * 121.70846 * 0.02562 * 23 22 21 25 25 C 1.33749 * 121.35197 * 359.95256 * 24 23 22 26 26 C 1.38407 * 119.70277 * 179.97438 * 17 15 14 27 27 C 1.47420 * 125.64843 * 180.02562 * 9 7 2 28 28 H 0.96998 * 120.00005 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.88237 * 59.56880 * 10 9 7 30 30 H 1.08998 * 109.88066 * 298.40581 * 10 9 7 31 31 H 1.09000 * 110.72298 * 219.43938 * 11 10 9 32 32 H 1.09008 * 110.87037 * 96.24276 * 11 10 9 33 33 H 0.97000 * 119.99456 * 24.99849 * 14 12 11 34 34 H 1.07998 * 119.63454 * 359.97438 * 18 17 15 35 35 H 1.07995 * 120.00809 * 179.97438 * 19 18 17 36 36 H 1.08003 * 120.89625 * 0.04443 * 21 20 19 37 37 H 1.08003 * 120.03189 * 180.02562 * 22 21 20 38 38 H 1.07994 * 119.14509 * 179.97438 * 23 22 21 39 39 H 1.07999 * 120.23873 * 359.97438 * 26 17 15 40 40 H 1.09006 * 110.36761 * 85.24770 * 27 9 7 41 41 H 1.08996 * 110.37146 * 322.92312 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1374 -2.5328 0.0005 11 6 -0.4483 -4.0441 -0.0261 12 6 0.8516 -4.6561 -0.6117 13 1 0.9834 -5.6855 -0.2786 14 7 0.8573 -4.5757 -2.0745 15 6 1.5886 -5.4492 -2.7946 16 8 2.2439 -6.3035 -2.2303 17 6 1.5894 -5.3719 -4.2714 18 6 0.8297 -4.3813 -4.9175 19 6 0.8157 -4.2909 -6.2726 20 6 1.5659 -5.1944 -7.0445 21 6 1.5686 -5.1232 -8.4510 22 6 2.3186 -6.0316 -9.1416 23 6 3.0543 -6.9945 -8.4522 24 7 3.0497 -7.0581 -7.1435 25 6 2.3370 -6.1983 -6.4075 26 6 2.3431 -6.2717 -5.0048 27 6 1.9336 -3.7311 -0.0005 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5582 -2.0522 -0.8828 30 1 -0.5536 -2.0845 0.9027 31 1 -1.2989 -4.2515 -0.6754 32 1 -0.6325 -4.4205 0.9802 33 1 0.3346 -3.8938 -2.5247 34 1 0.2508 -3.6842 -4.3298 35 1 0.2276 -3.5254 -6.7568 36 1 0.9933 -4.3703 -8.9692 37 1 2.3424 -6.0037 -10.2210 38 1 3.6426 -7.7069 -9.0113 39 1 2.9288 -7.0273 -4.5024 40 1 2.1671 -4.0418 1.0179 41 1 2.8327 -3.7406 -0.6166 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015870620.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:35:58 Heat of formation + Delta-G solvation = 28.306482 kcal Electronic energy + Delta-G solvation = -24681.317667 eV Core-core repulsion = 21139.852595 eV Total energy + Delta-G solvation = -3541.465072 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 3.43 seconds Orbital eigenvalues (eV) -41.95740 -40.91933 -39.01028 -37.70468 -35.50252 -34.48372 -33.74842 -31.81678 -31.05631 -30.88779 -29.00849 -26.65737 -25.70764 -24.88214 -23.26398 -22.46995 -21.90882 -21.41607 -19.68503 -18.85960 -18.47611 -17.93587 -17.29677 -17.04160 -16.64381 -16.17580 -15.69157 -15.55092 -15.49964 -15.27013 -15.07595 -14.70629 -14.58389 -14.07298 -13.92702 -13.84891 -13.59118 -12.95223 -12.91497 -12.83023 -12.74048 -12.54447 -12.31115 -12.10897 -11.99633 -11.82227 -11.60757 -11.56547 -11.11696 -10.72737 -10.50347 -10.19446 -9.83161 -9.35226 -8.86311 -7.85153 -5.19177 -0.79227 -0.37857 0.85477 1.43177 1.45648 1.46755 1.56585 2.04982 2.25739 2.49079 3.07571 3.25964 3.33887 3.51790 3.60927 3.66621 3.79674 3.82427 3.93975 4.03576 4.05882 4.06396 4.26888 4.32051 4.56544 4.67075 4.71199 4.73269 4.85361 4.86822 4.90583 4.99403 5.03648 5.07866 5.16251 5.31040 5.44705 5.46317 5.53963 5.67797 5.76531 5.77050 6.20037 6.48122 6.89854 7.10312 7.12316 7.76789 8.41153 9.24830 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.016502 B = 0.003315 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.354509 B = 8444.624965 C = 9361.117846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.057 4.057 3 Si 0.973 3.027 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.620 5.620 10 C 0.183 3.817 11 C -0.133 4.133 12 C 0.139 3.861 13 H 0.104 0.896 14 N -0.691 5.691 15 C 0.555 3.445 16 O -0.577 6.577 17 C -0.121 4.121 18 C -0.101 4.101 19 C -0.085 4.085 20 C -0.100 4.100 21 C -0.059 4.059 22 C -0.160 4.160 23 C 0.127 3.873 24 N -0.509 5.509 25 C 0.093 3.907 26 C -0.045 4.045 27 C 0.121 3.879 28 H 0.248 0.752 29 H 0.024 0.976 30 H 0.011 0.989 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.409 0.591 34 H 0.144 0.856 35 H 0.173 0.827 36 H 0.178 0.822 37 H 0.181 0.819 38 H 0.191 0.809 39 H 0.129 0.871 40 H 0.034 0.966 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.797 -11.072 -20.096 23.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.251 4.251 3 Si 0.802 3.198 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.347 5.347 10 C 0.059 3.941 11 C -0.172 4.172 12 C 0.033 3.967 13 H 0.122 0.878 14 N -0.341 5.341 15 C 0.344 3.656 16 O -0.459 6.459 17 C -0.126 4.126 18 C -0.120 4.120 19 C -0.104 4.104 20 C -0.103 4.103 21 C -0.085 4.085 22 C -0.180 4.180 23 C -0.046 4.046 24 N -0.218 5.218 25 C -0.026 4.026 26 C -0.065 4.065 27 C -0.005 4.005 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.029 0.971 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.246 0.754 34 H 0.162 0.838 35 H 0.190 0.810 36 H 0.195 0.805 37 H 0.198 0.802 38 H 0.207 0.793 39 H 0.147 0.853 40 H 0.052 0.948 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.929 -12.057 -19.098 22.605 hybrid contribution -0.026 1.923 0.079 1.925 sum -0.955 -10.134 -19.020 21.572 Atomic orbital electron populations 1.70141 1.05832 1.25181 1.58135 1.25497 0.96627 1.00398 1.02543 0.85091 0.77918 0.79901 0.76876 1.19882 1.21495 1.21909 1.19361 0.90639 0.83857 1.43164 0.91094 1.44706 1.02524 1.00412 1.87064 1.20978 0.83291 0.91323 0.98533 1.23097 0.96233 0.95631 1.02227 1.22032 0.96291 0.99283 0.79114 0.87781 1.45714 1.47974 1.33474 1.06965 1.18537 0.78775 0.80803 0.87528 1.90724 1.44068 1.37979 1.73107 1.19835 1.01540 0.99139 0.92075 1.21161 0.98021 0.96748 0.96044 1.21278 0.97880 0.98316 0.92876 1.19266 0.98274 0.96484 0.96243 1.21992 0.96758 0.98624 0.91108 1.22423 0.96700 0.95078 1.03753 1.23715 0.94984 0.96751 0.89114 1.68016 1.19591 1.24716 1.09475 1.18835 0.96423 0.93994 0.93366 1.21145 0.96133 0.97304 0.91928 1.22062 0.95248 0.85767 0.97421 0.94274 0.95814 0.97104 0.88633 0.88943 0.75403 0.83840 0.80994 0.80511 0.80178 0.79258 0.85307 0.94847 0.95582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.54 10.31 21.65 0.22 -54.31 16 2 C -0.06 -3.19 5.49 84.86 0.47 -2.73 16 3 Si 0.97 45.43 29.55 68.60 2.03 47.46 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 7 C -0.24 -13.54 10.28 84.04 0.86 -12.67 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 9 N -0.62 -31.38 3.39 -692.00 -2.35 -33.73 16 10 C 0.18 8.47 5.36 86.73 0.47 8.94 16 11 C -0.13 -4.47 6.55 31.78 0.21 -4.26 16 12 C 0.14 4.88 3.43 46.38 0.16 5.04 16 13 H 0.10 3.51 7.54 -2.39 -0.02 3.49 16 14 N -0.69 -22.96 5.14 -438.79 -2.25 -25.22 16 15 C 0.56 19.43 7.77 86.80 0.67 20.10 16 16 O -0.58 -23.82 15.94 -3.88 -0.06 -23.88 16 17 C -0.12 -3.62 5.87 -20.11 -0.12 -3.74 16 18 C -0.10 -2.40 9.44 22.28 0.21 -2.19 16 19 C -0.09 -1.60 9.74 22.27 0.22 -1.39 16 20 C -0.10 -2.06 5.75 -21.23 -0.12 -2.18 16 21 C -0.06 -0.74 9.88 22.51 0.22 -0.52 16 22 C -0.16 -1.65 10.03 22.16 0.22 -1.42 16 23 C 0.13 1.96 11.15 85.10 0.95 2.91 16 24 N -0.51 -12.69 10.34 -188.65 -1.95 -14.64 16 25 C 0.09 2.50 6.60 40.25 0.27 2.76 16 26 C -0.05 -1.38 9.56 22.85 0.22 -1.16 16 27 C 0.12 5.25 6.93 86.86 0.60 5.85 16 28 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 29 H 0.02 1.19 7.38 -2.38 -0.02 1.17 16 30 H 0.01 0.57 7.51 -2.39 -0.02 0.55 16 31 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.09 2.80 8.14 -2.38 -0.02 2.78 16 33 H 0.41 12.52 6.65 -92.71 -0.62 11.90 16 34 H 0.14 3.05 6.34 -2.91 -0.02 3.03 16 35 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 36 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16 37 H 0.18 0.34 8.06 -2.91 -0.02 0.32 16 38 H 0.19 1.53 8.06 -2.91 -0.02 1.51 16 39 H 0.13 4.29 7.60 -2.91 -0.02 4.27 16 40 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -75.57 343.76 1.58 -73.99 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.45 Total: 16.99 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 5.50 Total: 13.34 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -6.33 Total: -127.90 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.06 Total: -23.88 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -75.57 1.58 -73.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015870620.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.296 kcal (2) G-P(sol) polarization free energy of solvation -75.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.43 seconds