Wall clock time and date at job start Fri Apr 10 2020 22:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 119.99942 * 2 1 4 4 H 1.48497 * 109.47210 * 85.01588 * 3 2 1 5 5 H 1.48508 * 109.46960 * 205.01258 * 3 2 1 6 6 H 1.48498 * 109.47283 * 325.01222 * 3 2 1 7 7 C 1.38817 * 119.99830 * 180.27417 * 2 1 3 8 8 H 1.07997 * 119.99509 * 188.74985 * 7 2 1 9 9 N 1.36935 * 119.99735 * 8.75221 * 7 2 1 10 10 C 1.47424 * 125.65240 * 10.32443 * 9 7 2 11 11 C 1.55124 * 104.72221 * 155.81580 * 10 9 7 12 12 C 1.55157 * 101.48823 * 37.29858 * 11 10 9 13 13 H 1.08997 * 110.72624 * 82.69301 * 12 11 10 14 14 N 1.46501 * 110.72034 * 205.97198 * 12 11 10 15 15 C 1.34780 * 120.00007 * 199.97394 * 14 12 11 16 16 O 1.21583 * 119.99719 * 359.97438 * 15 14 12 17 17 C 1.47563 * 119.99799 * 179.97438 * 15 14 12 18 18 C 1.38705 * 120.43662 * 354.17059 * 17 15 14 19 19 C 1.39006 * 120.75286 * 179.71853 * 18 17 15 20 20 C 1.36335 * 121.18769 * 0.57124 * 19 18 17 21 21 C 1.40359 * 119.93203 * 359.71848 * 20 19 18 22 22 C 1.40684 * 122.10230 * 179.97438 * 21 20 19 23 23 C 1.36265 * 118.66418 * 180.02562 * 22 21 20 24 24 N 1.32510 * 121.84282 * 359.97438 * 23 22 21 25 25 C 1.31311 * 122.71807 * 0.02562 * 24 23 22 26 26 C 1.40139 * 119.92040 * 359.97438 * 25 24 23 27 27 C 1.47023 * 125.64299 * 190.62734 * 9 7 2 28 28 H 0.96997 * 119.99526 * 0.02562 * 1 2 3 29 29 H 1.09005 * 110.35921 * 274.74539 * 10 9 7 30 30 H 1.08997 * 110.36469 * 37.06549 * 10 9 7 31 31 H 1.08998 * 111.19318 * 279.18545 * 11 10 9 32 32 H 1.09003 * 110.93833 * 155.28616 * 11 10 9 33 33 H 0.97002 * 119.99986 * 19.96917 * 14 12 11 34 34 H 1.07998 * 119.62502 * 0.02562 * 18 17 15 35 35 H 1.07994 * 119.40234 * 180.27535 * 19 18 17 36 36 H 1.08008 * 120.03736 * 179.69986 * 20 19 18 37 37 H 1.08000 * 120.66821 * 0.04498 * 22 21 20 38 38 H 1.08004 * 119.07521 * 180.02562 * 23 22 21 39 39 H 1.08000 * 120.03984 * 180.02562 * 25 24 23 40 40 H 1.08993 * 109.88615 * 300.44267 * 27 9 7 41 41 H 1.09004 * 109.87907 * 61.60920 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 1.3947 5 1 3.5965 1.4120 -0.5920 6 1 1.5044 2.6199 -0.8028 7 6 2.0103 -1.2022 -0.0058 8 1 3.0808 -1.2083 0.1365 9 7 1.3375 -2.3803 -0.1918 10 6 -0.0711 -2.5090 -0.6076 11 6 -0.1628 -3.9133 -1.2601 12 6 0.7868 -4.7386 -0.3520 13 1 0.2693 -5.0679 0.5489 14 7 1.3379 -5.8826 -1.0825 15 6 1.8453 -6.9326 -0.4068 16 8 1.8460 -6.9301 0.8090 17 6 2.3999 -8.0852 -1.1426 18 6 2.2956 -8.1531 -2.5241 19 6 2.8208 -9.2329 -3.2244 20 6 3.4416 -10.2597 -2.5770 21 6 3.5639 -10.2342 -1.1789 22 6 4.1950 -11.2689 -0.4647 23 6 4.2741 -11.1726 0.8923 24 7 3.7755 -10.1359 1.5499 25 6 3.1742 -9.1360 0.9476 26 6 3.0405 -9.1387 -0.4474 27 6 1.8985 -3.7262 -0.0041 28 1 -0.4849 0.8401 -0.0004 29 1 -0.7294 -2.4469 0.2590 30 1 -0.3244 -1.7365 -1.3336 31 1 0.1984 -3.8944 -2.2883 32 1 -1.1812 -4.2990 -1.2130 33 1 1.3377 -5.8845 -2.0525 34 1 1.8051 -7.3555 -3.0622 35 1 2.7312 -9.2613 -4.3002 36 1 3.8387 -11.0920 -3.1392 37 1 4.6086 -12.1223 -0.9814 38 1 4.7576 -11.9631 1.4472 39 1 2.7838 -8.3120 1.5265 40 1 2.7508 -3.8686 -0.6684 41 1 2.2080 -3.8574 1.0328 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015928862.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:05 Heat of formation + Delta-G solvation = 55.641992 kcal Electronic energy + Delta-G solvation = -24652.089280 eV Core-core repulsion = 21111.809565 eV Total energy + Delta-G solvation = -3540.279716 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.26525 -39.55194 -37.54209 -37.19045 -34.22965 -33.16928 -31.96981 -31.41923 -30.03875 -29.08914 -27.19044 -25.06037 -24.39323 -23.71928 -23.27894 -20.96946 -20.49070 -19.92534 -18.22062 -17.96833 -16.99238 -16.87383 -16.22895 -16.02027 -15.28590 -15.03430 -14.83400 -14.62383 -14.32261 -14.01167 -13.85272 -13.64552 -12.99768 -12.94428 -12.44526 -12.34606 -12.32703 -12.06435 -11.83584 -11.70979 -11.17562 -10.89728 -10.82207 -10.54456 -10.38861 -10.11458 -9.93422 -9.84262 -9.70598 -9.46353 -9.42222 -8.92998 -8.61318 -8.33627 -6.82649 -5.76915 -3.09857 -0.13897 0.62333 1.42083 2.52280 3.07621 3.17365 3.39348 3.45103 3.47114 3.90536 4.23554 4.29722 4.40374 4.49628 4.51343 4.61957 4.66705 4.80181 5.02009 5.17510 5.33675 5.39540 5.44457 5.45821 5.47673 5.65835 5.71516 5.74623 5.81213 5.86800 6.02775 6.10744 6.29837 6.35054 6.39529 6.42661 6.60844 6.73997 6.92869 7.40937 7.50461 7.56357 7.75115 7.87282 8.19223 8.25033 9.17205 9.78547 10.45075 11.36311 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.024701 B = 0.002823 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.264222 B = 9917.182786 C =10284.074390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.076 0.924 9 N -0.602 5.602 10 C 0.175 3.825 11 C -0.151 4.151 12 C 0.131 3.869 13 H 0.096 0.904 14 N -0.705 5.705 15 C 0.556 3.444 16 O -0.529 6.529 17 C -0.094 4.094 18 C -0.081 4.081 19 C -0.106 4.106 20 C -0.090 4.090 21 C -0.030 4.030 22 C -0.166 4.166 23 C 0.078 3.922 24 N -0.490 5.490 25 C 0.148 3.852 26 C -0.081 4.081 27 C 0.128 3.872 28 H 0.253 0.747 29 H 0.031 0.969 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.398 0.602 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.152 0.848 39 H 0.202 0.798 40 H 0.025 0.975 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.099 -22.530 -8.657 24.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.206 1.206 6 H -0.216 1.216 7 C -0.357 4.357 8 H 0.094 0.906 9 N -0.329 5.329 10 C 0.049 3.951 11 C -0.190 4.190 12 C 0.027 3.973 13 H 0.114 0.886 14 N -0.355 5.355 15 C 0.344 3.656 16 O -0.408 6.408 17 C -0.099 4.099 18 C -0.101 4.101 19 C -0.125 4.125 20 C -0.108 4.108 21 C -0.035 4.035 22 C -0.186 4.186 23 C -0.065 4.065 24 N -0.198 5.198 25 C -0.021 4.021 26 C -0.083 4.083 27 C 0.001 3.999 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.234 0.766 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.155 0.845 38 H 0.169 0.831 39 H 0.218 0.782 40 H 0.043 0.957 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.195 -22.395 -6.859 23.795 hybrid contribution 0.438 0.752 -1.509 1.742 sum 4.633 -21.643 -8.368 23.662 Atomic orbital electron populations 1.69936 1.04962 1.25248 1.56517 1.24834 0.95662 0.97845 1.02020 0.86105 0.78719 0.83403 0.77564 1.21561 1.20591 1.21607 1.19034 0.91027 0.82637 1.42970 0.90600 1.44442 1.09146 0.99708 1.79599 1.21450 0.86010 0.90383 0.97221 1.23369 0.97810 0.99225 0.98639 1.22172 0.95157 0.84223 0.95773 0.88591 1.46013 1.60988 1.18305 1.10174 1.18078 0.78064 0.82239 0.87269 1.90583 1.56747 1.80150 1.13314 1.19993 1.00922 0.95166 0.93791 1.21466 0.97460 0.98261 0.92865 1.20908 0.97416 0.93520 1.00654 1.21151 0.98091 0.98925 0.92681 1.18167 0.97247 0.94066 0.94032 1.21859 1.01759 0.99207 0.95767 1.22343 0.96337 0.95954 0.91868 1.67699 1.09240 1.01529 1.41367 1.24692 0.90147 0.96068 0.91225 1.18879 0.99539 0.94249 0.95673 1.21614 0.94146 0.85845 0.98282 0.93655 0.95083 0.90788 0.91633 0.91448 0.76621 0.84825 0.84753 0.84760 0.84481 0.83099 0.78197 0.95670 0.95235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.69 10.66 55.49 0.59 -26.09 16 2 C -0.01 -0.20 5.41 -17.43 -0.09 -0.29 16 3 Si 0.91 22.00 29.56 -169.99 -5.03 16.98 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.23 -6.39 10.24 -15.06 -0.15 -6.54 16 8 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 9 N -0.60 -15.31 3.39 -169.93 -0.58 -15.89 16 10 C 0.17 4.06 5.43 -2.41 -0.01 4.05 16 11 C -0.15 -2.57 6.71 -24.47 -0.16 -2.74 16 12 C 0.13 2.26 3.23 -66.09 -0.21 2.04 16 13 H 0.10 1.76 7.70 -51.93 -0.40 1.36 16 14 N -0.70 -9.62 5.08 -53.06 -0.27 -9.89 16 15 C 0.56 8.11 7.73 -12.46 -0.10 8.02 16 16 O -0.53 -9.34 13.20 5.29 0.07 -9.27 16 17 C -0.09 -1.14 5.90 -104.66 -0.62 -1.75 16 18 C -0.08 -0.72 9.51 -39.12 -0.37 -1.09 16 19 C -0.11 -0.77 9.93 -39.98 -0.40 -1.16 16 20 C -0.09 -0.70 9.79 -39.47 -0.39 -1.09 16 21 C -0.03 -0.31 5.74 -106.84 -0.61 -0.93 16 22 C -0.17 -1.53 9.88 -39.37 -0.39 -1.92 16 23 C 0.08 0.84 11.07 -17.97 -0.20 0.64 16 24 N -0.49 -6.81 10.30 -13.21 -0.14 -6.95 16 25 C 0.15 2.14 10.49 -17.06 -0.18 1.96 16 26 C -0.08 -1.04 5.76 -106.59 -0.61 -1.66 16 27 C 0.13 2.74 6.99 -3.06 -0.02 2.72 16 28 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 30 H 0.07 1.89 6.93 -51.93 -0.36 1.54 16 31 H 0.07 1.02 8.00 -51.93 -0.42 0.60 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.40 4.21 6.59 -40.82 -0.27 3.94 16 34 H 0.13 0.86 6.42 -52.49 -0.34 0.53 16 35 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 37 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.15 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.20 3.17 4.97 -52.49 -0.26 2.91 16 40 H 0.03 0.54 8.03 -51.93 -0.42 0.12 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 338.72 15.07 5.10 5.10 Total: -1.00 -33.29 338.72 -9.73 -43.01 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -4.96 Total: 2.75 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -4.52 Total: 0.25 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.39 Total: -58.83 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.07 Total: -9.27 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.29 -9.73 -43.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015928862.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.657 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds