Wall clock time and date at job start Fri Apr 10 2020 22:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 119.99942 * 2 1 4 4 H 1.48497 * 109.47210 * 85.01588 * 3 2 1 5 5 H 1.48508 * 109.46960 * 205.01258 * 3 2 1 6 6 H 1.48498 * 109.47283 * 325.01222 * 3 2 1 7 7 C 1.38817 * 119.99830 * 180.27417 * 2 1 3 8 8 H 1.07997 * 119.99509 * 188.74985 * 7 2 1 9 9 N 1.36935 * 119.99735 * 8.75221 * 7 2 1 10 10 C 1.47424 * 125.65240 * 10.32443 * 9 7 2 11 11 C 1.55124 * 104.72221 * 155.81580 * 10 9 7 12 12 C 1.55157 * 101.48823 * 37.29858 * 11 10 9 13 13 H 1.08997 * 110.72624 * 82.69301 * 12 11 10 14 14 N 1.46501 * 110.72034 * 205.97198 * 12 11 10 15 15 C 1.34780 * 120.00007 * 199.97394 * 14 12 11 16 16 O 1.21583 * 119.99719 * 359.97438 * 15 14 12 17 17 C 1.47563 * 119.99799 * 179.97438 * 15 14 12 18 18 C 1.38705 * 120.43662 * 354.17059 * 17 15 14 19 19 C 1.39006 * 120.75286 * 179.71853 * 18 17 15 20 20 C 1.36335 * 121.18769 * 0.57124 * 19 18 17 21 21 C 1.40359 * 119.93203 * 359.71848 * 20 19 18 22 22 C 1.40684 * 122.10230 * 179.97438 * 21 20 19 23 23 C 1.36265 * 118.66418 * 180.02562 * 22 21 20 24 24 N 1.32510 * 121.84282 * 359.97438 * 23 22 21 25 25 C 1.31311 * 122.71807 * 0.02562 * 24 23 22 26 26 C 1.40139 * 119.92040 * 359.97438 * 25 24 23 27 27 C 1.47023 * 125.64299 * 190.62734 * 9 7 2 28 28 H 0.96997 * 119.99526 * 0.02562 * 1 2 3 29 29 H 1.09005 * 110.35921 * 274.74539 * 10 9 7 30 30 H 1.08997 * 110.36469 * 37.06549 * 10 9 7 31 31 H 1.08998 * 111.19318 * 279.18545 * 11 10 9 32 32 H 1.09003 * 110.93833 * 155.28616 * 11 10 9 33 33 H 0.97002 * 119.99986 * 19.96917 * 14 12 11 34 34 H 1.07998 * 119.62502 * 0.02562 * 18 17 15 35 35 H 1.07994 * 119.40234 * 180.27535 * 19 18 17 36 36 H 1.08008 * 120.03736 * 179.69986 * 20 19 18 37 37 H 1.08000 * 120.66821 * 0.04498 * 22 21 20 38 38 H 1.08004 * 119.07521 * 180.02562 * 23 22 21 39 39 H 1.08000 * 120.03984 * 180.02562 * 25 24 23 40 40 H 1.08993 * 109.88615 * 300.44267 * 27 9 7 41 41 H 1.09004 * 109.87907 * 61.60920 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 1.3947 5 1 3.5965 1.4120 -0.5920 6 1 1.5044 2.6199 -0.8028 7 6 2.0103 -1.2022 -0.0058 8 1 3.0808 -1.2083 0.1365 9 7 1.3375 -2.3803 -0.1918 10 6 -0.0711 -2.5090 -0.6076 11 6 -0.1628 -3.9133 -1.2601 12 6 0.7868 -4.7386 -0.3520 13 1 0.2693 -5.0679 0.5489 14 7 1.3379 -5.8826 -1.0825 15 6 1.8453 -6.9326 -0.4068 16 8 1.8460 -6.9301 0.8090 17 6 2.3999 -8.0852 -1.1426 18 6 2.2956 -8.1531 -2.5241 19 6 2.8208 -9.2329 -3.2244 20 6 3.4416 -10.2597 -2.5770 21 6 3.5639 -10.2342 -1.1789 22 6 4.1950 -11.2689 -0.4647 23 6 4.2741 -11.1726 0.8923 24 7 3.7755 -10.1359 1.5499 25 6 3.1742 -9.1360 0.9476 26 6 3.0405 -9.1387 -0.4474 27 6 1.8985 -3.7262 -0.0041 28 1 -0.4849 0.8401 -0.0004 29 1 -0.7294 -2.4469 0.2590 30 1 -0.3244 -1.7365 -1.3336 31 1 0.1984 -3.8944 -2.2883 32 1 -1.1812 -4.2990 -1.2130 33 1 1.3377 -5.8845 -2.0525 34 1 1.8051 -7.3555 -3.0622 35 1 2.7312 -9.2613 -4.3002 36 1 3.8387 -11.0920 -3.1392 37 1 4.6086 -12.1223 -0.9814 38 1 4.7576 -11.9631 1.4472 39 1 2.7838 -8.3120 1.5265 40 1 2.7508 -3.8686 -0.6684 41 1 2.2080 -3.8574 1.0328 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015928862.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:04 Heat of formation + Delta-G solvation = 33.360877 kcal Electronic energy + Delta-G solvation = -24653.055462 eV Core-core repulsion = 21111.809565 eV Total energy + Delta-G solvation = -3541.245897 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.11895 -40.69864 -38.93667 -38.17100 -35.74626 -34.15034 -33.63554 -32.17249 -31.27122 -30.55250 -28.80995 -26.62115 -25.55145 -24.46884 -24.30774 -22.42770 -21.85921 -21.45911 -19.24289 -18.88835 -18.63797 -17.83810 -17.27471 -17.12758 -16.73628 -16.41892 -16.03311 -15.80516 -15.60117 -15.07436 -14.97472 -14.62950 -14.40556 -14.11627 -13.88400 -13.67704 -13.54574 -13.10022 -13.00933 -12.92145 -12.74842 -12.54538 -12.51863 -12.20687 -12.01976 -11.84987 -11.56222 -11.18332 -10.92374 -10.71842 -10.38997 -10.23628 -10.16556 -9.09421 -8.90073 -7.90855 -5.26707 -0.91192 -0.11378 0.57687 1.45793 1.47046 1.56959 1.71000 1.96522 2.22309 2.48825 3.08444 3.28576 3.42616 3.53130 3.67591 3.72198 3.76503 3.79256 3.86027 3.96000 4.00917 4.20441 4.23015 4.40482 4.55601 4.60591 4.70071 4.72967 4.81085 4.87185 4.91709 4.95740 5.01786 5.12317 5.20858 5.35226 5.41182 5.49161 5.56587 5.67927 5.70256 5.79901 6.17968 6.46092 7.00518 7.05976 7.15370 7.71714 8.37402 9.20726 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.024701 B = 0.002823 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.264222 B = 9917.182786 C =10284.074390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.059 4.059 3 Si 0.979 3.021 4 H -0.289 1.289 5 H -0.269 1.269 6 H -0.287 1.287 7 C -0.250 4.250 8 H 0.073 0.927 9 N -0.622 5.622 10 C 0.175 3.825 11 C -0.126 4.126 12 C 0.150 3.850 13 H 0.081 0.919 14 N -0.692 5.692 15 C 0.554 3.446 16 O -0.571 6.571 17 C -0.132 4.132 18 C -0.056 4.056 19 C -0.107 4.107 20 C -0.072 4.072 21 C -0.051 4.051 22 C -0.141 4.141 23 C 0.049 3.951 24 N -0.516 5.516 25 C 0.109 3.891 26 C -0.095 4.095 27 C 0.128 3.872 28 H 0.251 0.749 29 H -0.001 1.001 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.417 0.583 34 H 0.161 0.839 35 H 0.177 0.823 36 H 0.176 0.824 37 H 0.182 0.818 38 H 0.177 0.823 39 H 0.172 0.828 40 H 0.031 0.969 41 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.073 -25.047 -12.672 28.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.253 4.253 3 Si 0.807 3.193 4 H -0.216 1.216 5 H -0.194 1.194 6 H -0.213 1.213 7 C -0.379 4.379 8 H 0.091 0.909 9 N -0.349 5.349 10 C 0.050 3.950 11 C -0.164 4.164 12 C 0.044 3.956 13 H 0.100 0.900 14 N -0.343 5.343 15 C 0.344 3.656 16 O -0.452 6.452 17 C -0.137 4.137 18 C -0.075 4.075 19 C -0.126 4.126 20 C -0.089 4.089 21 C -0.057 4.057 22 C -0.160 4.160 23 C -0.094 4.094 24 N -0.225 5.225 25 C -0.060 4.060 26 C -0.097 4.097 27 C 0.001 3.999 28 H 0.060 0.940 29 H 0.017 0.983 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.256 0.744 34 H 0.178 0.822 35 H 0.195 0.805 36 H 0.193 0.807 37 H 0.199 0.801 38 H 0.194 0.806 39 H 0.188 0.812 40 H 0.049 0.951 41 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 5.175 -24.938 -10.909 27.708 hybrid contribution 0.204 1.407 -0.299 1.453 sum 5.379 -23.531 -11.209 26.613 Atomic orbital electron populations 1.70129 1.06257 1.25721 1.57243 1.25663 0.96589 1.01026 1.01992 0.85068 0.77890 0.79060 0.77302 1.21601 1.19402 1.21325 1.19367 0.91365 0.84132 1.43010 0.90867 1.44740 1.10042 1.00447 1.79653 1.21302 0.84430 0.93539 0.95708 1.23171 0.99601 0.94626 0.99036 1.21681 0.93513 0.84437 0.95981 0.90043 1.45701 1.60849 1.16925 1.10861 1.18594 0.77202 0.82855 0.86963 1.90589 1.58192 1.81032 1.15408 1.19742 1.04106 0.94682 0.95126 1.21905 0.95157 0.99163 0.91297 1.21402 0.96235 0.92292 1.02627 1.21664 0.96139 0.99924 0.91221 1.18557 0.97775 0.93665 0.95674 1.22339 0.99097 0.99467 0.95110 1.22824 0.97357 0.95902 0.93324 1.67560 1.09636 1.02389 1.42922 1.24265 0.92844 0.96391 0.92496 1.18981 1.00106 0.95618 0.95033 1.21693 0.95803 0.85556 0.96856 0.94009 0.98306 0.93482 0.89020 0.88373 0.74418 0.82165 0.80539 0.80688 0.80119 0.80580 0.81181 0.95096 0.97975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.56 10.66 21.65 0.23 -56.33 16 2 C -0.06 -3.38 5.41 84.86 0.46 -2.92 16 3 Si 0.98 45.99 29.56 68.60 2.03 48.01 16 4 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 5 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 7 C -0.25 -14.40 10.24 84.04 0.86 -13.54 16 8 H 0.07 4.13 7.84 -2.91 -0.02 4.11 16 9 N -0.62 -32.74 3.39 -691.54 -2.35 -35.08 16 10 C 0.18 8.39 5.43 86.93 0.47 8.86 16 11 C -0.13 -4.11 6.71 32.06 0.21 -3.90 16 12 C 0.15 5.20 3.23 46.18 0.15 5.35 16 13 H 0.08 3.11 7.70 -2.39 -0.02 3.09 16 14 N -0.69 -18.28 5.08 -440.03 -2.24 -20.51 16 15 C 0.55 16.58 7.73 86.70 0.67 17.25 16 16 O -0.57 -21.92 13.20 -3.98 -0.05 -21.97 16 17 C -0.13 -3.10 5.90 -19.89 -0.12 -3.21 16 18 C -0.06 -0.79 9.51 22.57 0.21 -0.57 16 19 C -0.11 -0.94 9.93 22.01 0.22 -0.72 16 20 C -0.07 -0.73 9.79 22.34 0.22 -0.51 16 21 C -0.05 -0.94 5.74 -21.30 -0.12 -1.06 16 22 C -0.14 -2.16 9.88 22.41 0.22 -1.94 16 23 C 0.05 1.02 11.07 84.13 0.93 1.95 16 24 N -0.52 -15.24 10.30 -195.72 -2.02 -17.25 16 25 C 0.11 3.43 10.49 85.23 0.89 4.33 16 26 C -0.09 -2.45 5.76 -21.14 -0.12 -2.57 16 27 C 0.13 5.67 6.99 86.73 0.61 6.27 16 28 H 0.25 14.47 8.31 -92.71 -0.77 13.69 16 29 H 0.00 -0.06 8.07 -2.38 -0.02 -0.08 16 30 H 0.05 2.48 6.93 -2.39 -0.02 2.46 16 31 H 0.09 2.56 8.00 -2.39 -0.02 2.55 16 32 H 0.10 2.67 8.14 -2.39 -0.02 2.66 16 33 H 0.42 7.62 6.59 -92.71 -0.61 7.01 16 34 H 0.16 1.28 6.42 -2.91 -0.02 1.26 16 35 H 0.18 0.18 8.06 -2.91 -0.02 0.15 16 36 H 0.18 0.39 8.06 -2.91 -0.02 0.36 16 37 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 38 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 39 H 0.17 6.23 4.97 -2.93 -0.01 6.22 16 40 H 0.03 1.33 8.03 -2.39 -0.02 1.32 16 41 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 Total: -1.00 -80.23 338.72 1.84 -78.39 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.46 Total: 11.68 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 5.77 Total: 13.06 kcal Atomic # 7 Polarization: -122.81 SS G_CDS: -6.37 Total: -129.17 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.05 Total: -21.97 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -80.23 1.84 -78.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015928862.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.755 kcal (2) G-P(sol) polarization free energy of solvation -80.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds