Wall clock time and date at job start Fri Apr 10 2020 22:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00278 * 2 1 4 4 H 1.48491 * 109.46919 * 264.99969 * 3 2 1 5 5 H 1.48500 * 109.46739 * 24.99780 * 3 2 1 6 6 H 1.48501 * 109.47087 * 144.99462 * 3 2 1 7 7 C 1.38814 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99549 * 185.25006 * 7 2 1 9 9 N 1.36933 * 120.00329 * 5.24619 * 7 2 1 10 10 C 1.47028 * 125.64554 * 5.12230 * 9 7 2 11 11 C 1.54323 * 107.27146 * 178.98565 * 10 9 7 12 12 C 1.55156 * 102.94177 * 337.80634 * 11 10 9 13 13 H 1.08998 * 111.00908 * 277.38858 * 12 11 10 14 14 N 1.46504 * 111.00487 * 153.57593 * 12 11 10 15 15 C 1.34771 * 119.99831 * 155.00465 * 14 12 11 16 16 O 1.21587 * 120.00483 * 359.97438 * 15 14 12 17 17 C 1.47571 * 119.99619 * 180.02562 * 15 14 12 18 18 C 1.38697 * 120.43609 * 354.07658 * 17 15 14 19 19 C 1.39001 * 120.75440 * 179.72608 * 18 17 15 20 20 C 1.36346 * 121.19029 * 0.25735 * 19 18 17 21 21 C 1.40356 * 119.92597 * 359.97438 * 20 19 18 22 22 C 1.40680 * 122.10233 * 180.02562 * 21 20 19 23 23 C 1.36265 * 118.66881 * 179.97438 * 22 21 20 24 24 N 1.32509 * 121.83498 * 359.97438 * 23 22 21 25 25 C 1.31314 * 122.72625 * 0.02562 * 24 23 22 26 26 C 1.40135 * 119.91206 * 359.97438 * 25 24 23 27 27 C 1.47417 * 125.65248 * 185.17238 * 9 7 2 28 28 H 0.97006 * 119.99901 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.87817 * 59.56865 * 10 9 7 30 30 H 1.09002 * 109.88485 * 298.40381 * 10 9 7 31 31 H 1.09002 * 110.71982 * 219.44713 * 11 10 9 32 32 H 1.09003 * 110.71843 * 96.16900 * 11 10 9 33 33 H 0.97003 * 119.99952 * 335.00155 * 14 12 11 34 34 H 1.08000 * 119.62746 * 0.02562 * 18 17 15 35 35 H 1.08001 * 119.40661 * 180.27167 * 19 18 17 36 36 H 1.08002 * 120.03634 * 179.97438 * 20 19 18 37 37 H 1.08008 * 120.66883 * 359.95303 * 22 21 20 38 38 H 1.08002 * 119.08388 * 179.97438 * 23 22 21 39 39 H 1.07993 * 120.04086 * 179.97438 * 25 24 23 40 40 H 1.09006 * 110.36385 * 85.24622 * 27 9 7 41 41 H 1.09002 * 110.36697 * 322.92823 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6035 1.9853 -1.3947 5 1 1.3989 2.6808 0.5917 6 1 3.4910 1.4729 0.8032 7 6 2.0102 -1.2022 0.0005 8 1 3.0868 -1.2041 0.0861 9 7 1.3299 -2.3856 -0.1074 10 6 -0.1159 -2.5251 -0.3358 11 6 -0.4242 -4.0353 -0.4114 12 6 0.9493 -4.6520 -0.7863 13 1 1.1241 -4.5930 -1.8605 14 7 1.0494 -6.0360 -0.3162 15 6 1.8829 -6.8980 -0.9315 16 8 2.5514 -6.5274 -1.8770 17 6 1.9832 -8.2922 -0.4583 18 6 1.3191 -8.6935 0.6913 19 6 1.4044 -10.0064 1.1399 20 6 2.1446 -10.9349 0.4697 21 6 2.8366 -10.5702 -0.6957 22 6 3.6130 -11.4907 -1.4231 23 6 4.2553 -11.0611 -2.5454 24 7 4.1665 -9.8074 -2.9650 25 6 3.4603 -8.8965 -2.3357 26 6 2.7612 -9.2366 -1.1698 27 6 1.9254 -3.7308 -0.0127 28 1 -0.4850 0.8401 -0.0004 29 1 -0.3911 -2.0431 -1.2739 30 1 -0.6668 -2.0752 0.4902 31 1 -1.1630 -4.2397 -1.1863 32 1 -0.7637 -4.4085 0.5548 33 1 0.5158 -6.3318 0.4380 34 1 0.7249 -7.9790 1.2416 35 1 0.8748 -10.2963 2.0353 36 1 2.1982 -11.9498 0.8351 37 1 3.6985 -12.5172 -1.0983 38 1 4.8535 -11.7620 -3.1087 39 1 3.4185 -7.8867 -2.7161 40 1 1.9953 -4.0423 1.0296 41 1 2.9100 -3.7436 -0.4801 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015928863.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:08 Heat of formation + Delta-G solvation = 55.821591 kcal Electronic energy + Delta-G solvation = -24611.629149 eV Core-core repulsion = 21071.357222 eV Total energy + Delta-G solvation = -3540.271928 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.27170 -39.54358 -37.54726 -37.20434 -34.24248 -33.17530 -31.96891 -31.42630 -30.04036 -29.10248 -27.18372 -25.05188 -24.39837 -23.72652 -23.29411 -20.90731 -20.45502 -20.02753 -18.24857 -17.97416 -17.01023 -16.88770 -16.23716 -16.04998 -15.17286 -15.07252 -14.84735 -14.54026 -14.30859 -14.01872 -13.89790 -13.60017 -12.95495 -12.86220 -12.46949 -12.39296 -12.34747 -12.21627 -11.89465 -11.78282 -11.04768 -10.96629 -10.78047 -10.43345 -10.39563 -10.12341 -9.92955 -9.84685 -9.70939 -9.47376 -9.42968 -8.90954 -8.62274 -8.34291 -6.85653 -5.72598 -3.07539 -0.14684 0.61574 1.41262 2.51630 3.08816 3.14269 3.41522 3.46552 3.47789 3.89618 4.22777 4.29228 4.39842 4.50073 4.51389 4.61350 4.66007 4.79556 5.01428 5.17868 5.31163 5.41640 5.43813 5.45187 5.56435 5.65154 5.67599 5.74252 5.80466 5.86111 6.02072 6.12039 6.25329 6.34947 6.36540 6.47499 6.60925 6.66038 6.89437 7.45831 7.51764 7.60179 7.78707 7.86430 8.19365 8.24766 9.19656 9.79891 10.44394 11.38490 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.026405 B = 0.002792 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.138640 B =10025.570158 C =10618.842826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.176 3.824 11 C -0.149 4.149 12 C 0.125 3.875 13 H 0.101 0.899 14 N -0.704 5.704 15 C 0.557 3.443 16 O -0.529 6.529 17 C -0.094 4.094 18 C -0.081 4.081 19 C -0.106 4.106 20 C -0.090 4.090 21 C -0.030 4.030 22 C -0.166 4.166 23 C 0.078 3.922 24 N -0.490 5.490 25 C 0.148 3.852 26 C -0.081 4.081 27 C 0.129 3.871 28 H 0.253 0.747 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.398 0.602 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.152 0.848 39 H 0.202 0.798 40 H 0.020 0.980 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.391 -24.719 2.198 24.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.051 3.949 11 C -0.188 4.188 12 C 0.020 3.980 13 H 0.119 0.881 14 N -0.354 5.354 15 C 0.344 3.656 16 O -0.408 6.408 17 C -0.099 4.099 18 C -0.100 4.100 19 C -0.125 4.125 20 C -0.108 4.108 21 C -0.035 4.035 22 C -0.186 4.186 23 C -0.065 4.065 24 N -0.198 5.198 25 C -0.022 4.022 26 C -0.083 4.083 27 C 0.002 3.998 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.233 0.767 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.155 0.845 38 H 0.169 0.831 39 H 0.218 0.782 40 H 0.037 0.963 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.309 -24.090 0.756 24.137 hybrid contribution -0.335 0.335 1.327 1.410 sum 0.974 -23.754 2.084 23.866 Atomic orbital electron populations 1.69936 1.04912 1.25151 1.57013 1.24809 0.95727 0.97730 1.02147 0.86114 0.78550 0.83230 0.77741 1.21475 1.21691 1.20701 1.19059 0.90741 0.82359 1.43444 0.90381 1.44376 1.03763 0.99760 1.85035 1.21188 0.85218 0.87515 1.00981 1.23186 0.95118 0.99998 1.00466 1.22418 0.97415 0.78049 1.00087 0.88107 1.45939 1.43131 1.11630 1.34713 1.18069 0.80064 0.84567 0.82925 1.90587 1.44026 1.78033 1.28149 1.19992 0.99618 0.93602 0.96671 1.21467 0.97177 0.96652 0.94741 1.20913 0.98687 0.92764 1.00133 1.21153 0.95811 1.00099 0.93783 1.18165 0.97040 0.92810 0.95504 1.21861 0.99369 1.00107 0.97246 1.22342 0.96985 0.92986 0.94197 1.67695 1.17728 1.01987 1.32437 1.24690 0.87732 1.00594 0.89143 1.18878 0.99070 0.92945 0.97446 1.21817 0.95509 0.86191 0.96313 0.93704 0.94413 0.92197 0.91502 0.91925 0.76693 0.84803 0.84745 0.84758 0.84478 0.83098 0.78203 0.96268 0.93734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.85 10.41 55.49 0.58 -26.27 16 2 C -0.01 -0.22 5.46 -17.43 -0.10 -0.32 16 3 Si 0.91 22.20 29.56 -169.99 -5.02 17.17 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.23 -6.39 10.27 -15.06 -0.15 -6.55 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -15.33 3.39 -170.07 -0.58 -15.91 16 10 C 0.18 4.13 5.40 -3.06 -0.02 4.11 16 11 C -0.15 -2.55 6.60 -24.90 -0.16 -2.71 16 12 C 0.12 2.16 3.42 -65.78 -0.23 1.94 16 13 H 0.10 1.92 7.54 -51.93 -0.39 1.53 16 14 N -0.70 -9.49 5.15 -52.75 -0.27 -9.76 16 15 C 0.56 8.05 7.73 -12.46 -0.10 7.95 16 16 O -0.53 -9.33 13.11 5.29 0.07 -9.26 16 17 C -0.09 -1.12 5.90 -104.66 -0.62 -1.74 16 18 C -0.08 -0.71 9.51 -39.13 -0.37 -1.08 16 19 C -0.11 -0.75 9.93 -39.98 -0.40 -1.15 16 20 C -0.09 -0.69 9.79 -39.47 -0.39 -1.08 16 21 C -0.03 -0.31 5.74 -106.84 -0.61 -0.93 16 22 C -0.17 -1.51 9.88 -39.37 -0.39 -1.90 16 23 C 0.08 0.83 11.07 -17.97 -0.20 0.63 16 24 N -0.49 -6.75 10.30 -13.22 -0.14 -6.88 16 25 C 0.15 2.11 10.49 -17.06 -0.18 1.94 16 26 C -0.08 -1.03 5.76 -106.59 -0.61 -1.64 16 27 C 0.13 2.71 6.93 -2.53 -0.02 2.69 16 28 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.04 0.97 7.80 -51.93 -0.41 0.57 16 30 H 0.06 1.55 7.10 -51.93 -0.37 1.18 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.94 8.00 -51.93 -0.42 0.53 16 33 H 0.40 4.09 6.64 -40.82 -0.27 3.82 16 34 H 0.13 0.85 6.42 -52.49 -0.34 0.51 16 35 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 36 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 37 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 38 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 39 H 0.20 3.14 4.97 -52.49 -0.26 2.88 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 338.41 15.07 5.10 5.10 Total: -1.00 -33.35 338.41 -9.76 -43.11 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -4.96 Total: 2.56 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -4.54 Total: 0.16 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -0.41 Total: -58.83 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.07 Total: -9.26 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.35 -9.76 -43.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015928863.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.928 kcal (2) G-P(sol) polarization free energy of solvation -33.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds