Wall clock time and date at job start Fri Apr 10 2020 22:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 120.00278 * 2 1 4 4 H 1.48491 * 109.46919 * 264.99969 * 3 2 1 5 5 H 1.48500 * 109.46739 * 24.99780 * 3 2 1 6 6 H 1.48501 * 109.47087 * 144.99462 * 3 2 1 7 7 C 1.38814 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99549 * 185.25006 * 7 2 1 9 9 N 1.36933 * 120.00329 * 5.24619 * 7 2 1 10 10 C 1.47028 * 125.64554 * 5.12230 * 9 7 2 11 11 C 1.54323 * 107.27146 * 178.98565 * 10 9 7 12 12 C 1.55156 * 102.94177 * 337.80634 * 11 10 9 13 13 H 1.08998 * 111.00908 * 277.38858 * 12 11 10 14 14 N 1.46504 * 111.00487 * 153.57593 * 12 11 10 15 15 C 1.34771 * 119.99831 * 155.00465 * 14 12 11 16 16 O 1.21587 * 120.00483 * 359.97438 * 15 14 12 17 17 C 1.47571 * 119.99619 * 180.02562 * 15 14 12 18 18 C 1.38697 * 120.43609 * 354.07658 * 17 15 14 19 19 C 1.39001 * 120.75440 * 179.72608 * 18 17 15 20 20 C 1.36346 * 121.19029 * 0.25735 * 19 18 17 21 21 C 1.40356 * 119.92597 * 359.97438 * 20 19 18 22 22 C 1.40680 * 122.10233 * 180.02562 * 21 20 19 23 23 C 1.36265 * 118.66881 * 179.97438 * 22 21 20 24 24 N 1.32509 * 121.83498 * 359.97438 * 23 22 21 25 25 C 1.31314 * 122.72625 * 0.02562 * 24 23 22 26 26 C 1.40135 * 119.91206 * 359.97438 * 25 24 23 27 27 C 1.47417 * 125.65248 * 185.17238 * 9 7 2 28 28 H 0.97006 * 119.99901 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.87817 * 59.56865 * 10 9 7 30 30 H 1.09002 * 109.88485 * 298.40381 * 10 9 7 31 31 H 1.09002 * 110.71982 * 219.44713 * 11 10 9 32 32 H 1.09003 * 110.71843 * 96.16900 * 11 10 9 33 33 H 0.97003 * 119.99952 * 335.00155 * 14 12 11 34 34 H 1.08000 * 119.62746 * 0.02562 * 18 17 15 35 35 H 1.08001 * 119.40661 * 180.27167 * 19 18 17 36 36 H 1.08002 * 120.03634 * 179.97438 * 20 19 18 37 37 H 1.08008 * 120.66883 * 359.95303 * 22 21 20 38 38 H 1.08002 * 119.08388 * 179.97438 * 23 22 21 39 39 H 1.07993 * 120.04086 * 179.97438 * 25 24 23 40 40 H 1.09006 * 110.36385 * 85.24622 * 27 9 7 41 41 H 1.09002 * 110.36697 * 322.92823 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6035 1.9853 -1.3947 5 1 1.3989 2.6808 0.5917 6 1 3.4910 1.4729 0.8032 7 6 2.0102 -1.2022 0.0005 8 1 3.0868 -1.2041 0.0861 9 7 1.3299 -2.3856 -0.1074 10 6 -0.1159 -2.5251 -0.3358 11 6 -0.4242 -4.0353 -0.4114 12 6 0.9493 -4.6520 -0.7863 13 1 1.1241 -4.5930 -1.8605 14 7 1.0494 -6.0360 -0.3162 15 6 1.8829 -6.8980 -0.9315 16 8 2.5514 -6.5274 -1.8770 17 6 1.9832 -8.2922 -0.4583 18 6 1.3191 -8.6935 0.6913 19 6 1.4044 -10.0064 1.1399 20 6 2.1446 -10.9349 0.4697 21 6 2.8366 -10.5702 -0.6957 22 6 3.6130 -11.4907 -1.4231 23 6 4.2553 -11.0611 -2.5454 24 7 4.1665 -9.8074 -2.9650 25 6 3.4603 -8.8965 -2.3357 26 6 2.7612 -9.2366 -1.1698 27 6 1.9254 -3.7308 -0.0127 28 1 -0.4850 0.8401 -0.0004 29 1 -0.3911 -2.0431 -1.2739 30 1 -0.6668 -2.0752 0.4902 31 1 -1.1630 -4.2397 -1.1863 32 1 -0.7637 -4.4085 0.5548 33 1 0.5158 -6.3318 0.4380 34 1 0.7249 -7.9790 1.2416 35 1 0.8748 -10.2963 2.0353 36 1 2.1982 -11.9498 0.8351 37 1 3.6985 -12.5172 -1.0983 38 1 4.8535 -11.7620 -3.1087 39 1 3.4185 -7.8867 -2.7161 40 1 1.9953 -4.0423 1.0296 41 1 2.9100 -3.7436 -0.4801 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015928863.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:07 Heat of formation + Delta-G solvation = 33.458399 kcal Electronic energy + Delta-G solvation = -24612.598890 eV Core-core repulsion = 21071.357222 eV Total energy + Delta-G solvation = -3541.241668 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.11383 -40.68130 -38.94808 -38.16943 -35.74997 -34.14657 -33.63436 -32.16892 -31.26894 -30.56390 -28.79172 -26.61408 -25.55334 -24.46723 -24.31241 -22.26281 -21.89678 -21.58116 -19.26324 -18.91458 -18.63705 -17.81445 -17.27848 -17.15667 -16.68453 -16.21074 -16.08292 -15.87527 -15.57079 -15.08600 -14.87781 -14.62266 -14.32688 -14.14513 -13.94680 -13.72418 -13.67377 -13.07980 -13.00420 -12.96365 -12.78148 -12.53650 -12.44660 -12.13890 -12.04919 -11.82603 -11.55531 -11.18077 -10.92587 -10.73962 -10.39553 -10.20538 -10.15995 -9.09365 -8.92321 -7.87212 -5.24555 -0.90878 -0.11048 0.58004 1.44899 1.47771 1.55319 1.71745 1.95752 2.21895 2.49162 3.08682 3.30321 3.43427 3.54030 3.64862 3.71802 3.76777 3.83615 3.89245 3.96415 4.03287 4.18655 4.21762 4.40828 4.56142 4.62031 4.68862 4.73249 4.81445 4.86167 4.90510 4.95008 5.01265 5.14250 5.21286 5.35644 5.41384 5.47756 5.63532 5.68314 5.73194 5.80202 6.18079 6.46783 7.00945 7.07835 7.16074 7.73340 8.36556 9.21809 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.026405 B = 0.002792 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.138640 B =10025.570158 C =10618.842826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.061 4.061 3 Si 0.978 3.022 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.271 1.271 7 C -0.248 4.248 8 H 0.076 0.924 9 N -0.625 5.625 10 C 0.180 3.820 11 C -0.126 4.126 12 C 0.145 3.855 13 H 0.078 0.922 14 N -0.690 5.690 15 C 0.555 3.445 16 O -0.572 6.572 17 C -0.131 4.131 18 C -0.056 4.056 19 C -0.107 4.107 20 C -0.072 4.072 21 C -0.051 4.051 22 C -0.141 4.141 23 C 0.049 3.951 24 N -0.516 5.516 25 C 0.109 3.891 26 C -0.094 4.094 27 C 0.128 3.872 28 H 0.249 0.751 29 H 0.001 0.999 30 H 0.032 0.968 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.417 0.583 34 H 0.161 0.839 35 H 0.177 0.823 36 H 0.176 0.824 37 H 0.181 0.819 38 H 0.177 0.823 39 H 0.172 0.828 40 H 0.033 0.967 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.396 -28.359 4.811 28.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.254 4.254 3 Si 0.806 3.194 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.196 1.196 7 C -0.377 4.377 8 H 0.094 0.906 9 N -0.352 5.352 10 C 0.055 3.945 11 C -0.165 4.165 12 C 0.039 3.961 13 H 0.097 0.903 14 N -0.342 5.342 15 C 0.344 3.656 16 O -0.453 6.453 17 C -0.136 4.136 18 C -0.075 4.075 19 C -0.126 4.126 20 C -0.089 4.089 21 C -0.057 4.057 22 C -0.160 4.160 23 C -0.094 4.094 24 N -0.225 5.225 25 C -0.060 4.060 26 C -0.097 4.097 27 C 0.001 3.999 28 H 0.058 0.942 29 H 0.020 0.980 30 H 0.050 0.950 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.256 0.744 34 H 0.178 0.822 35 H 0.194 0.806 36 H 0.193 0.807 37 H 0.199 0.801 38 H 0.194 0.806 39 H 0.188 0.812 40 H 0.051 0.949 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.516 -27.772 3.395 27.983 hybrid contribution -0.056 1.307 0.573 1.428 sum 0.460 -26.465 3.968 26.765 Atomic orbital electron populations 1.70139 1.06104 1.25495 1.57757 1.25626 0.96682 1.00864 1.02264 0.85109 0.77631 0.79056 0.77613 1.21402 1.21541 1.19563 1.19390 0.91083 0.83927 1.43292 0.90642 1.44657 1.04878 1.00683 1.84954 1.20999 0.84013 0.91599 0.97893 1.23000 0.95278 0.95061 1.03151 1.21860 0.96287 0.79611 0.98345 0.90335 1.45614 1.43531 1.09713 1.35334 1.18587 0.79053 0.85776 0.82145 1.90594 1.45612 1.79030 1.30075 1.19733 1.02948 0.91829 0.99085 1.21900 0.94788 0.98219 0.92611 1.21402 0.98414 0.91529 1.01204 1.21663 0.93464 1.02090 0.91725 1.18553 0.98207 0.91857 0.97048 1.22337 0.96574 1.01635 0.95474 1.22821 0.98556 0.92205 0.95817 1.67558 1.18032 1.03510 1.33419 1.24268 0.90519 0.99984 0.91215 1.18978 0.99103 0.94629 0.97005 1.21929 0.95409 0.85290 0.97249 0.94156 0.98028 0.95024 0.89166 0.88624 0.74390 0.82181 0.80560 0.80709 0.80142 0.80596 0.81152 0.94932 0.95704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.83 10.41 21.65 0.23 -56.60 16 2 C -0.06 -3.52 5.46 84.86 0.46 -3.06 16 3 Si 0.98 46.59 29.56 68.60 2.03 48.62 16 4 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.25 -14.37 10.27 84.03 0.86 -13.50 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 9 N -0.62 -32.86 3.39 -691.97 -2.35 -35.21 16 10 C 0.18 8.69 5.40 86.73 0.47 9.16 16 11 C -0.13 -4.19 6.60 31.78 0.21 -3.98 16 12 C 0.15 5.05 3.42 46.38 0.16 5.21 16 13 H 0.08 3.12 7.54 -2.39 -0.02 3.10 16 14 N -0.69 -17.91 5.15 -439.08 -2.26 -20.17 16 15 C 0.56 16.40 7.73 86.71 0.67 17.07 16 16 O -0.57 -21.87 13.11 -3.99 -0.05 -21.92 16 17 C -0.13 -3.03 5.90 -19.89 -0.12 -3.15 16 18 C -0.06 -0.77 9.51 22.56 0.21 -0.55 16 19 C -0.11 -0.91 9.93 22.01 0.22 -0.69 16 20 C -0.07 -0.71 9.79 22.34 0.22 -0.49 16 21 C -0.05 -0.92 5.74 -21.30 -0.12 -1.04 16 22 C -0.14 -2.12 9.88 22.41 0.22 -1.90 16 23 C 0.05 1.00 11.07 84.13 0.93 1.93 16 24 N -0.52 -15.04 10.30 -195.73 -2.02 -17.06 16 25 C 0.11 3.39 10.49 85.23 0.89 4.28 16 26 C -0.09 -2.41 5.76 -21.14 -0.12 -2.53 16 27 C 0.13 5.49 6.93 86.86 0.60 6.09 16 28 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 29 H 0.00 0.08 7.80 -2.39 -0.02 0.06 16 30 H 0.03 1.69 7.10 -2.39 -0.02 1.67 16 31 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.10 2.58 8.00 -2.39 -0.02 2.56 16 33 H 0.42 7.32 6.64 -92.71 -0.62 6.70 16 34 H 0.16 1.24 6.42 -2.91 -0.02 1.22 16 35 H 0.18 0.14 8.06 -2.91 -0.02 0.12 16 36 H 0.18 0.34 8.06 -2.91 -0.02 0.32 16 37 H 0.18 1.05 8.06 -2.91 -0.02 1.02 16 38 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.17 6.16 4.97 -2.94 -0.01 6.15 16 40 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -80.37 338.41 1.80 -78.57 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.45 Total: 10.94 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 5.77 Total: 12.85 kcal Atomic # 7 Polarization: -122.65 SS G_CDS: -6.40 Total: -129.05 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.05 Total: -21.92 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -80.37 1.80 -78.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015928863.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.025 kcal (2) G-P(sol) polarization free energy of solvation -80.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds