Wall clock time and date at job start Fri Apr 10 2020 22:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99850 * 2 1 4 4 H 1.48499 * 109.47236 * 269.99971 * 3 2 1 5 5 H 1.48499 * 109.47097 * 30.00311 * 3 2 1 6 6 H 1.48497 * 109.46830 * 149.99655 * 3 2 1 7 7 C 1.38809 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00119 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99822 * 0.02562 * 7 2 1 10 10 C 1.47017 * 125.65013 * 359.97165 * 9 7 2 11 11 C 1.54326 * 107.27255 * 178.96374 * 10 9 7 12 12 C 1.55156 * 102.93951 * 337.80753 * 11 10 9 13 13 H 1.09006 * 111.00403 * 277.38814 * 12 11 10 14 14 N 1.46505 * 111.00189 * 153.57641 * 12 11 10 15 15 C 1.34782 * 119.99590 * 154.99691 * 14 12 11 16 16 O 1.21559 * 120.00177 * 0.02562 * 15 14 12 17 17 C 1.47773 * 119.99453 * 179.97438 * 15 14 12 18 18 C 1.40657 * 119.70205 * 0.02562 * 17 15 14 19 19 C 1.35839 * 120.87476 * 180.29760 * 18 17 15 20 20 C 1.40400 * 119.84900 * 359.45401 * 19 18 17 21 21 C 1.40632 * 121.97570 * 180.24547 * 20 19 18 22 22 C 1.36210 * 118.73297 * 180.29597 * 21 20 19 23 23 N 1.32597 * 121.89909 * 0.02562 * 22 21 20 24 24 C 1.31234 * 122.74160 * 359.97438 * 23 22 21 25 25 C 1.40551 * 119.89177 * 359.97438 * 24 23 22 26 26 C 1.38573 * 119.69567 * 180.02562 * 17 15 14 27 27 C 1.47433 * 125.64533 * 179.97438 * 9 7 2 28 28 H 0.97003 * 120.00111 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.88150 * 59.54454 * 10 9 7 30 30 H 1.09003 * 109.88580 * 298.38012 * 10 9 7 31 31 H 1.09003 * 110.71909 * 219.44583 * 11 10 9 32 32 H 1.08997 * 110.87294 * 96.23744 * 11 10 9 33 33 H 0.96993 * 119.99744 * 334.99818 * 14 12 11 34 34 H 1.08002 * 119.55768 * 0.02562 * 18 17 15 35 35 H 1.08002 * 120.07444 * 179.69840 * 19 18 17 36 36 H 1.08005 * 120.62914 * 0.27122 * 21 20 19 37 37 H 1.08009 * 119.05374 * 180.02562 * 22 21 20 38 38 H 1.08001 * 120.05712 * 179.97438 * 24 23 22 39 39 H 1.07997 * 120.34265 * 0.02562 * 26 17 15 40 40 H 1.08998 * 110.36211 * 85.26613 * 27 9 7 41 41 H 1.09000 * 110.36573 * 322.94175 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1375 -2.5328 -0.0017 11 6 -0.4484 -4.0441 -0.0297 12 6 0.8520 -4.6556 -0.6149 13 1 0.8566 -4.5955 -1.7033 14 7 1.0292 -6.0393 -0.1675 15 6 1.7594 -6.8981 -0.9063 16 8 2.2713 -6.5244 -1.9436 17 6 1.9386 -8.2937 -0.4546 18 6 1.3438 -8.7192 0.7469 19 6 1.4980 -9.9949 1.1875 20 6 2.2503 -10.9088 0.4325 21 6 2.4345 -12.2410 0.8438 22 6 3.1821 -13.0698 0.0632 23 7 3.7378 -12.6555 -1.0672 24 6 3.6091 -11.4280 -1.5131 25 6 2.8560 -10.4927 -0.7826 26 6 2.6910 -9.1713 -1.2188 27 6 1.9335 -3.7312 -0.0028 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5575 -2.0514 -0.8848 30 1 -0.5543 -2.0852 0.9006 31 1 -1.2985 -4.2509 -0.6799 32 1 -0.6332 -4.4213 0.9761 33 1 0.6210 -6.3373 0.6604 34 1 0.7605 -8.0212 1.3290 35 1 1.0397 -10.3064 2.1145 36 1 1.9918 -12.5998 1.7612 37 1 3.3266 -14.0941 0.3739 38 1 4.0811 -11.1368 -2.4399 39 1 3.1461 -8.8400 -2.1405 40 1 2.1668 -4.0428 1.0153 41 1 2.8329 -3.7399 -0.6186 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015949070.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:18 Heat of formation + Delta-G solvation = 48.684567 kcal Electronic energy + Delta-G solvation = -24157.082880 eV Core-core repulsion = 20616.501468 eV Total energy + Delta-G solvation = -3540.581412 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -41.22685 -39.75291 -37.63018 -36.93778 -34.18769 -33.33646 -32.22350 -31.32652 -30.08203 -29.16385 -27.26709 -25.16811 -24.31828 -24.14015 -22.61744 -21.25331 -20.43596 -20.03989 -18.46151 -18.07723 -17.10293 -16.88541 -15.98443 -15.86185 -15.40682 -14.97964 -14.67628 -14.46612 -14.32586 -14.22629 -13.97550 -13.89813 -13.49796 -12.88460 -12.48535 -12.43289 -12.26862 -12.15492 -11.82674 -11.62816 -11.05723 -10.92877 -10.78183 -10.57302 -10.42391 -10.12220 -10.00536 -9.93439 -9.78184 -9.69200 -9.50290 -8.83847 -8.61563 -8.44756 -6.86090 -5.72993 -3.06673 -0.12133 0.35344 1.45783 2.30387 3.16200 3.22907 3.40812 3.45815 3.47520 3.75661 4.02012 4.14330 4.29213 4.38303 4.49086 4.57620 4.65160 4.78177 4.83611 5.19309 5.23829 5.30925 5.39841 5.41429 5.51718 5.56994 5.61889 5.70241 5.76193 5.90786 5.95204 6.13861 6.21968 6.26798 6.34873 6.37973 6.53010 6.65975 6.91814 7.50803 7.55118 7.57517 7.60396 7.79558 8.21791 8.27508 9.20186 9.79980 10.44538 11.38938 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.036051 B = 0.002381 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.493116 B =11756.243399 C =12060.182275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.150 4.150 12 C 0.126 3.874 13 H 0.099 0.901 14 N -0.709 5.709 15 C 0.553 3.447 16 O -0.533 6.533 17 C -0.131 4.131 18 C -0.069 4.069 19 C -0.118 4.118 20 C -0.010 4.010 21 C -0.160 4.160 22 C 0.082 3.918 23 N -0.493 5.493 24 C 0.159 3.841 25 C -0.123 4.123 26 C -0.017 4.017 27 C 0.129 3.871 28 H 0.253 0.747 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.396 0.604 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.154 0.846 38 H 0.168 0.832 39 H 0.150 0.850 40 H 0.020 0.980 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.844 -24.996 2.963 25.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.189 4.189 12 C 0.021 3.979 13 H 0.117 0.883 14 N -0.360 5.360 15 C 0.340 3.660 16 O -0.411 6.411 17 C -0.134 4.134 18 C -0.089 4.089 19 C -0.136 4.136 20 C -0.015 4.015 21 C -0.180 4.180 22 C -0.061 4.061 23 N -0.201 5.201 24 C -0.012 4.012 25 C -0.126 4.126 26 C -0.038 4.038 27 C 0.002 3.998 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.232 0.768 34 H 0.150 0.850 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.171 0.829 38 H 0.185 0.815 39 H 0.168 0.832 40 H 0.037 0.963 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.607 -25.174 1.858 25.293 hybrid contribution -0.356 1.353 1.075 1.765 sum 1.250 -23.820 2.934 24.033 Atomic orbital electron populations 1.69946 1.04879 1.25102 1.57211 1.24810 0.95769 0.97713 1.02203 0.86086 0.78558 0.83308 0.77624 1.21531 1.21671 1.20683 1.19073 0.90510 0.82235 1.43688 0.90357 1.44394 1.01620 0.99777 1.87270 1.21152 0.84537 0.87363 1.01543 1.23194 0.95847 1.00088 0.99723 1.22375 0.97030 0.78250 1.00221 0.88293 1.45945 1.52481 1.11699 1.25846 1.18173 0.78964 0.84804 0.84071 1.90800 1.48135 1.78312 1.23867 1.20070 1.01904 0.94607 0.96794 1.21087 0.96953 0.96327 0.94550 1.20857 0.99605 0.93007 1.00161 1.18303 0.95368 0.94247 0.93561 1.21930 1.01155 0.93206 1.01711 1.22262 0.93451 1.00180 0.90166 1.67489 1.20595 1.17516 1.14488 1.23353 0.92305 0.87639 0.97948 1.19020 1.01408 0.95569 0.96558 1.21485 0.93260 0.90463 0.98604 1.21819 0.94829 0.86181 0.97003 0.93715 0.93168 0.93520 0.91529 0.92057 0.76843 0.84963 0.84504 0.84261 0.82894 0.81510 0.83235 0.96263 0.93814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.99 10.31 55.49 0.57 -26.41 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -15.49 3.40 -170.08 -0.58 -16.07 16 10 C 0.18 4.24 5.37 -3.07 -0.02 4.22 16 11 C -0.15 -2.61 6.60 -24.90 -0.16 -2.77 16 12 C 0.13 2.23 3.42 -65.79 -0.23 2.01 16 13 H 0.10 1.95 7.54 -51.93 -0.39 1.56 16 14 N -0.71 -9.81 5.15 -52.70 -0.27 -10.08 16 15 C 0.55 8.08 7.76 -12.36 -0.10 7.99 16 16 O -0.53 -9.82 15.94 5.31 0.08 -9.74 16 17 C -0.13 -1.48 5.87 -104.96 -0.62 -2.10 16 18 C -0.07 -0.61 9.44 -39.53 -0.37 -0.98 16 19 C -0.12 -0.92 9.77 -39.63 -0.39 -1.31 16 20 C -0.01 -0.09 5.75 -106.74 -0.61 -0.70 16 21 C -0.16 -1.18 9.87 -39.41 -0.39 -1.56 16 22 C 0.08 0.65 11.07 -17.95 -0.20 0.46 16 23 N -0.49 -4.85 10.30 -13.12 -0.14 -4.99 16 24 C 0.16 1.44 11.05 -16.94 -0.19 1.25 16 25 C -0.12 -1.20 5.74 -106.87 -0.61 -1.82 16 26 C -0.02 -0.18 9.37 -38.75 -0.36 -0.55 16 27 C 0.13 2.75 6.93 -2.54 -0.02 2.73 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 30 H 0.05 1.21 7.51 -51.93 -0.39 0.82 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.93 8.00 -51.93 -0.42 0.52 16 33 H 0.40 4.21 6.54 -40.82 -0.27 3.94 16 34 H 0.13 0.87 6.34 -52.49 -0.33 0.53 16 35 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 37 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.15 1.52 7.61 -52.49 -0.40 1.12 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 343.46 15.07 5.18 5.18 Total: -1.00 -34.08 343.46 -9.77 -43.85 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -5.08 Total: 1.08 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -4.51 Total: -0.02 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -0.41 Total: -57.55 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.08 Total: -9.74 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.08 -9.77 -43.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015949070.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.533 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds