Wall clock time and date at job start Fri Apr 10 2020 22:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99850 * 2 1 4 4 H 1.48499 * 109.47236 * 269.99971 * 3 2 1 5 5 H 1.48499 * 109.47097 * 30.00311 * 3 2 1 6 6 H 1.48497 * 109.46830 * 149.99655 * 3 2 1 7 7 C 1.38809 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00119 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99822 * 0.02562 * 7 2 1 10 10 C 1.47017 * 125.65013 * 359.97165 * 9 7 2 11 11 C 1.54326 * 107.27255 * 178.96374 * 10 9 7 12 12 C 1.55156 * 102.93951 * 337.80753 * 11 10 9 13 13 H 1.09006 * 111.00403 * 277.38814 * 12 11 10 14 14 N 1.46505 * 111.00189 * 153.57641 * 12 11 10 15 15 C 1.34782 * 119.99590 * 154.99691 * 14 12 11 16 16 O 1.21559 * 120.00177 * 0.02562 * 15 14 12 17 17 C 1.47773 * 119.99453 * 179.97438 * 15 14 12 18 18 C 1.40657 * 119.70205 * 0.02562 * 17 15 14 19 19 C 1.35839 * 120.87476 * 180.29760 * 18 17 15 20 20 C 1.40400 * 119.84900 * 359.45401 * 19 18 17 21 21 C 1.40632 * 121.97570 * 180.24547 * 20 19 18 22 22 C 1.36210 * 118.73297 * 180.29597 * 21 20 19 23 23 N 1.32597 * 121.89909 * 0.02562 * 22 21 20 24 24 C 1.31234 * 122.74160 * 359.97438 * 23 22 21 25 25 C 1.40551 * 119.89177 * 359.97438 * 24 23 22 26 26 C 1.38573 * 119.69567 * 180.02562 * 17 15 14 27 27 C 1.47433 * 125.64533 * 179.97438 * 9 7 2 28 28 H 0.97003 * 120.00111 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.88150 * 59.54454 * 10 9 7 30 30 H 1.09003 * 109.88580 * 298.38012 * 10 9 7 31 31 H 1.09003 * 110.71909 * 219.44583 * 11 10 9 32 32 H 1.08997 * 110.87294 * 96.23744 * 11 10 9 33 33 H 0.96993 * 119.99744 * 334.99818 * 14 12 11 34 34 H 1.08002 * 119.55768 * 0.02562 * 18 17 15 35 35 H 1.08002 * 120.07444 * 179.69840 * 19 18 17 36 36 H 1.08005 * 120.62914 * 0.27122 * 21 20 19 37 37 H 1.08009 * 119.05374 * 180.02562 * 22 21 20 38 38 H 1.08001 * 120.05712 * 179.97438 * 24 23 22 39 39 H 1.07997 * 120.34265 * 0.02562 * 26 17 15 40 40 H 1.08998 * 110.36211 * 85.26613 * 27 9 7 41 41 H 1.09000 * 110.36573 * 322.94175 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1375 -2.5328 -0.0017 11 6 -0.4484 -4.0441 -0.0297 12 6 0.8520 -4.6556 -0.6149 13 1 0.8566 -4.5955 -1.7033 14 7 1.0292 -6.0393 -0.1675 15 6 1.7594 -6.8981 -0.9063 16 8 2.2713 -6.5244 -1.9436 17 6 1.9386 -8.2937 -0.4546 18 6 1.3438 -8.7192 0.7469 19 6 1.4980 -9.9949 1.1875 20 6 2.2503 -10.9088 0.4325 21 6 2.4345 -12.2410 0.8438 22 6 3.1821 -13.0698 0.0632 23 7 3.7378 -12.6555 -1.0672 24 6 3.6091 -11.4280 -1.5131 25 6 2.8560 -10.4927 -0.7826 26 6 2.6910 -9.1713 -1.2188 27 6 1.9335 -3.7312 -0.0028 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5575 -2.0514 -0.8848 30 1 -0.5543 -2.0852 0.9006 31 1 -1.2985 -4.2509 -0.6799 32 1 -0.6332 -4.4213 0.9761 33 1 0.6210 -6.3373 0.6604 34 1 0.7605 -8.0212 1.3290 35 1 1.0397 -10.3064 2.1145 36 1 1.9918 -12.5998 1.7612 37 1 3.3266 -14.0941 0.3739 38 1 4.0811 -11.1368 -2.4399 39 1 3.1461 -8.8400 -2.1405 40 1 2.1668 -4.0428 1.0153 41 1 2.8329 -3.7399 -0.6186 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015949070.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:16 Heat of formation + Delta-G solvation = 26.434759 kcal Electronic energy + Delta-G solvation = -24158.047704 eV Core-core repulsion = 20616.501468 eV Total energy + Delta-G solvation = -3541.546236 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 3.02 seconds Orbital eigenvalues (eV) -41.94424 -40.88461 -39.04093 -37.92054 -35.72666 -34.00793 -33.88495 -32.30881 -31.02158 -30.69091 -28.89186 -26.69633 -25.47996 -24.94238 -23.31906 -22.44790 -21.99157 -21.66791 -19.52547 -18.88802 -18.67739 -17.89459 -17.14679 -16.83429 -16.65388 -16.19196 -15.99184 -15.81223 -15.49145 -15.16973 -14.90112 -14.61050 -14.45365 -14.23970 -14.17058 -13.96418 -13.72733 -13.07448 -12.95239 -12.85819 -12.77271 -12.44415 -12.30324 -12.13332 -12.04295 -11.82669 -11.59114 -11.23177 -11.14112 -10.73006 -10.50543 -10.28938 -10.08856 -9.10602 -8.93044 -7.87613 -5.23737 -0.81274 -0.32394 0.77667 1.45125 1.47454 1.50108 1.55923 1.99832 2.31829 2.49320 3.06131 3.30991 3.44853 3.48070 3.60104 3.65273 3.68947 3.82706 3.90895 4.01271 4.03709 4.06620 4.19104 4.33002 4.57788 4.65581 4.68567 4.70967 4.80423 4.85798 4.89326 4.94428 4.97153 5.06380 5.20161 5.31938 5.41181 5.47524 5.62206 5.63625 5.72174 5.73363 6.17559 6.49796 6.95787 7.08105 7.15208 7.73457 8.36492 9.22407 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.036051 B = 0.002381 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.493116 B =11756.243399 C =12060.182275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.980 3.020 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.270 1.270 7 C -0.247 4.247 8 H 0.077 0.923 9 N -0.626 5.626 10 C 0.183 3.817 11 C -0.128 4.128 12 C 0.145 3.855 13 H 0.077 0.923 14 N -0.694 5.694 15 C 0.554 3.446 16 O -0.580 6.580 17 C -0.144 4.144 18 C -0.074 4.074 19 C -0.106 4.106 20 C -0.023 4.023 21 C -0.152 4.152 22 C 0.070 3.930 23 N -0.515 5.515 24 C 0.148 3.852 25 C -0.136 4.136 26 C -0.024 4.024 27 C 0.127 3.873 28 H 0.249 0.751 29 H 0.013 0.987 30 H 0.019 0.981 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.416 0.584 34 H 0.157 0.843 35 H 0.173 0.827 36 H 0.174 0.826 37 H 0.179 0.821 38 H 0.181 0.819 39 H 0.142 0.858 40 H 0.034 0.966 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.428 -27.364 4.996 27.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.256 4.256 3 Si 0.808 3.192 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.195 1.195 7 C -0.376 4.376 8 H 0.095 0.905 9 N -0.353 5.353 10 C 0.058 3.942 11 C -0.166 4.166 12 C 0.039 3.961 13 H 0.095 0.905 14 N -0.346 5.346 15 C 0.343 3.657 16 O -0.461 6.461 17 C -0.147 4.147 18 C -0.094 4.094 19 C -0.124 4.124 20 C -0.029 4.029 21 C -0.171 4.171 22 C -0.072 4.072 23 N -0.223 5.223 24 C -0.023 4.023 25 C -0.138 4.138 26 C -0.045 4.045 27 C 0.001 3.999 28 H 0.058 0.942 29 H 0.031 0.969 30 H 0.037 0.963 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.255 0.745 34 H 0.175 0.825 35 H 0.190 0.810 36 H 0.191 0.809 37 H 0.196 0.804 38 H 0.198 0.802 39 H 0.160 0.840 40 H 0.052 0.948 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.190 -27.594 3.923 27.897 hybrid contribution -0.167 1.953 0.449 2.011 sum 1.023 -25.641 4.372 26.031 Atomic orbital electron populations 1.70156 1.06115 1.25456 1.57969 1.25647 0.96735 1.00929 1.02327 0.85065 0.77670 0.79031 0.77473 1.21392 1.21605 1.19508 1.19414 0.90898 0.83744 1.43494 0.90491 1.44680 1.02731 1.00700 1.87189 1.20954 0.83381 0.91409 0.98440 1.23008 0.96148 0.95184 1.02277 1.21842 0.95749 0.79784 0.98751 0.90521 1.45647 1.52520 1.09821 1.26611 1.18695 0.77773 0.86024 0.83236 1.90779 1.49957 1.79376 1.25971 1.19865 1.03782 0.92524 0.98525 1.21286 0.97044 0.97433 0.93605 1.21234 0.98268 0.92060 1.00795 1.18683 0.95373 0.95462 0.93341 1.22281 1.00196 0.92150 1.02499 1.22775 0.93190 1.01585 0.89686 1.67521 1.21367 1.17759 1.15663 1.23604 0.92507 0.87573 0.98604 1.19098 1.02113 0.95111 0.97470 1.21493 0.93389 0.91093 0.98523 1.21938 0.95150 0.85296 0.97535 0.94187 0.96857 0.96298 0.89205 0.88700 0.74462 0.82537 0.80953 0.80863 0.80425 0.80229 0.84037 0.94830 0.95696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.94 10.31 21.65 0.22 -56.72 16 2 C -0.06 -3.64 5.49 84.86 0.47 -3.18 16 3 Si 0.98 46.37 29.55 68.60 2.03 48.40 16 4 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.25 -14.22 10.28 84.03 0.86 -13.35 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 9 N -0.63 -32.84 3.40 -692.02 -2.35 -35.19 16 10 C 0.18 8.85 5.37 86.73 0.47 9.31 16 11 C -0.13 -4.24 6.60 31.78 0.21 -4.03 16 12 C 0.15 5.05 3.42 46.37 0.16 5.21 16 13 H 0.08 3.07 7.54 -2.38 -0.02 3.05 16 14 N -0.69 -17.99 5.15 -438.91 -2.26 -20.25 16 15 C 0.55 15.91 7.76 86.76 0.67 16.58 16 16 O -0.58 -21.97 15.94 -3.90 -0.06 -22.03 16 17 C -0.14 -3.09 5.87 -20.09 -0.12 -3.21 16 18 C -0.07 -1.06 9.44 22.30 0.21 -0.85 16 19 C -0.11 -1.23 9.77 22.24 0.22 -1.01 16 20 C -0.02 -0.35 5.75 -21.23 -0.12 -0.47 16 21 C -0.15 -1.69 9.87 22.38 0.22 -1.47 16 22 C 0.07 0.94 11.07 84.10 0.93 1.87 16 23 N -0.51 -9.48 10.30 -195.41 -2.01 -11.49 16 24 C 0.15 2.60 11.05 85.35 0.94 3.54 16 25 C -0.14 -2.51 5.74 -21.32 -0.12 -2.63 16 26 C -0.02 -0.51 9.37 22.81 0.21 -0.29 16 27 C 0.13 5.45 6.93 86.85 0.60 6.06 16 28 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.01 0.72 7.38 -2.39 -0.02 0.70 16 30 H 0.02 1.00 7.51 -2.39 -0.02 0.98 16 31 H 0.09 2.62 8.14 -2.39 -0.02 2.61 16 32 H 0.09 2.56 8.00 -2.39 -0.02 2.54 16 33 H 0.42 7.42 6.54 -92.71 -0.61 6.82 16 34 H 0.16 1.37 6.34 -2.91 -0.02 1.35 16 35 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 36 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 37 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 38 H 0.18 2.36 8.06 -2.91 -0.02 2.33 16 39 H 0.14 3.07 7.61 -2.91 -0.02 3.04 16 40 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -77.58 343.46 1.84 -75.75 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.46 Total: 9.45 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 5.81 Total: 12.07 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -6.40 Total: -123.65 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.06 Total: -22.03 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -77.58 1.84 -75.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015949070.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.183 kcal (2) G-P(sol) polarization free energy of solvation -77.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.02 seconds