Wall clock time and date at job start Fri Apr 10 2020 22:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86792 * 119.99787 * 2 1 4 4 H 1.48501 * 109.47512 * 5.28213 * 3 2 1 5 5 H 1.48508 * 109.47127 * 125.28124 * 3 2 1 6 6 H 1.48495 * 109.47289 * 245.27790 * 3 2 1 7 7 C 1.38813 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00116 * 345.68521 * 7 2 1 9 9 N 1.36935 * 119.99633 * 165.68026 * 7 2 1 10 10 C 1.47020 * 125.64918 * 348.93623 * 9 7 2 11 11 C 1.54334 * 107.26790 * 181.02250 * 10 9 7 12 12 C 1.55154 * 102.94217 * 22.19151 * 11 10 9 13 13 H 1.09007 * 111.00283 * 82.57376 * 12 11 10 14 14 N 1.46501 * 111.00325 * 206.41962 * 12 11 10 15 15 C 1.34771 * 120.00244 * 205.00052 * 14 12 11 16 16 O 1.21563 * 120.00072 * 0.02562 * 15 14 12 17 17 C 1.47774 * 120.00288 * 180.02562 * 15 14 12 18 18 C 1.40649 * 119.69284 * 359.72723 * 17 15 14 19 19 C 1.35853 * 120.86977 * 179.74668 * 18 17 15 20 20 C 1.40398 * 119.84641 * 0.52650 * 19 18 17 21 21 C 1.40634 * 121.96897 * 179.73886 * 20 19 18 22 22 C 1.36218 * 118.72823 * 180.02562 * 21 20 19 23 23 N 1.32599 * 121.89817 * 359.96036 * 22 21 20 24 24 C 1.31238 * 122.74600 * 0.02562 * 23 22 21 25 25 C 1.40546 * 119.88639 * 0.02562 * 24 23 22 26 26 C 1.38567 * 119.70100 * 179.97438 * 17 15 14 27 27 C 1.47431 * 125.64442 * 168.63009 * 9 7 2 28 28 H 0.97003 * 119.99939 * 174.92863 * 1 2 3 29 29 H 1.09000 * 109.88648 * 300.43561 * 10 9 7 30 30 H 1.08994 * 109.88344 * 61.45505 * 10 9 7 31 31 H 1.09000 * 110.71694 * 140.55842 * 11 10 9 32 32 H 1.09003 * 110.71603 * 263.82944 * 11 10 9 33 33 H 0.97002 * 119.99662 * 25.00694 * 14 12 11 34 34 H 1.07991 * 119.56821 * 359.97438 * 18 17 15 35 35 H 1.08006 * 120.07736 * 180.23964 * 19 18 17 36 36 H 1.08001 * 120.63684 * 359.97438 * 21 20 19 37 37 H 1.07997 * 119.05118 * 179.97438 * 22 21 20 38 38 H 1.07991 * 120.06007 * 179.97438 * 24 23 22 39 39 H 1.08000 * 120.34053 * 0.02562 * 26 17 15 40 40 H 1.08998 * 110.35883 * 274.74557 * 27 9 7 41 41 H 1.09000 * 110.36735 * 37.06529 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2903 2.7435 0.1289 5 1 3.1980 1.6421 1.1430 6 1 3.0047 1.7537 -1.2717 7 6 2.0102 -1.2022 0.0005 8 1 1.4954 -2.1228 0.2322 9 7 3.3477 -1.2206 -0.2928 10 6 4.1196 -0.0973 -0.8439 11 6 5.5709 -0.5875 -1.0323 12 6 5.4101 -2.1288 -1.1076 13 1 5.1300 -2.4438 -2.1129 14 7 6.6327 -2.8064 -0.6689 15 6 6.9078 -4.0508 -1.1071 16 8 6.1416 -4.6110 -1.8667 17 6 8.1407 -4.7345 -0.6642 18 6 9.0256 -4.0782 0.2102 19 6 10.1632 -4.6862 0.6366 20 6 10.4709 -5.9824 0.1935 21 6 11.6386 -6.6513 0.6020 22 6 11.8721 -7.9079 0.1308 23 7 11.0317 -8.5132 -0.6972 24 6 9.9237 -7.9513 -1.1202 25 6 9.5893 -6.6543 -0.6942 26 6 8.4171 -6.0142 -1.1182 27 6 4.2533 -2.3683 -0.1022 28 1 -0.4850 -0.8368 -0.0743 29 1 3.7023 0.2032 -1.8050 30 1 4.0970 0.7435 -0.1508 31 1 5.9923 -0.1979 -1.9590 32 1 6.1871 -0.3053 -0.1785 33 1 7.2442 -2.3593 -0.0630 34 1 8.7958 -3.0793 0.5501 35 1 10.8317 -4.1718 1.3111 36 1 12.3372 -6.1775 1.2756 37 1 12.7674 -8.4262 0.4408 38 1 9.2704 -8.4841 -1.7950 39 1 7.7369 -6.5124 -1.7930 40 1 4.6330 -2.3862 0.9193 41 1 3.7378 -3.3007 -0.3326 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015949071.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:23 Heat of formation + Delta-G solvation = 58.485018 kcal Electronic energy + Delta-G solvation = -24258.565023 eV Core-core repulsion = 20718.408590 eV Total energy + Delta-G solvation = -3540.156433 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.29243 -39.89571 -37.92234 -37.12483 -34.38899 -33.39682 -32.39787 -31.54607 -30.17207 -29.46064 -28.05169 -25.21122 -24.35208 -23.76796 -22.67120 -21.34295 -21.06964 -20.23291 -18.63120 -18.15438 -17.45844 -17.14296 -16.17890 -16.09350 -15.47854 -15.34729 -14.96266 -14.68134 -14.43888 -14.31738 -13.99717 -13.80985 -13.59128 -13.37718 -12.81188 -12.67503 -12.36114 -12.29808 -12.21567 -11.69681 -11.58231 -11.14021 -11.10280 -10.70684 -10.63003 -10.19822 -10.04443 -9.85457 -9.56949 -9.34643 -9.07471 -8.99383 -8.70173 -8.51117 -7.06337 -6.31851 -3.24051 -0.18213 0.29000 1.39759 2.22739 3.01013 3.13586 3.38874 3.46428 3.68938 3.69784 3.97027 4.08370 4.22925 4.31084 4.47131 4.58378 4.60862 4.70594 4.75959 4.89858 5.06826 5.14870 5.24620 5.27706 5.33144 5.35129 5.46652 5.49865 5.53435 5.79418 5.81889 5.85863 5.89678 6.03558 6.16485 6.26968 6.29055 6.33951 6.51197 6.68320 6.71755 7.44555 7.52751 7.64884 8.13035 8.32793 9.03315 9.53485 10.19745 11.18822 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.036788 B = 0.002520 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.940214 B =11107.124967 C =11477.041482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.023 4.023 3 Si 1.073 2.927 4 H -0.301 1.301 5 H -0.299 1.299 6 H -0.286 1.286 7 C -0.321 4.321 8 H 0.079 0.921 9 N -0.611 5.611 10 C 0.112 3.888 11 C -0.135 4.135 12 C 0.127 3.873 13 H 0.104 0.896 14 N -0.711 5.711 15 C 0.555 3.445 16 O -0.531 6.531 17 C -0.132 4.132 18 C -0.070 4.070 19 C -0.118 4.118 20 C -0.009 4.009 21 C -0.161 4.161 22 C 0.083 3.917 23 N -0.493 5.493 24 C 0.160 3.840 25 C -0.124 4.124 26 C -0.016 4.016 27 C 0.129 3.871 28 H 0.262 0.738 29 H 0.050 0.950 30 H 0.032 0.968 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.398 0.602 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.154 0.846 38 H 0.168 0.832 39 H 0.150 0.850 40 H 0.025 0.975 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.087 -10.378 0.463 29.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.222 4.222 3 Si 0.907 3.093 4 H -0.230 1.230 5 H -0.228 1.228 6 H -0.213 1.213 7 C -0.448 4.448 8 H 0.096 0.904 9 N -0.339 5.339 10 C -0.013 4.013 11 C -0.173 4.173 12 C 0.022 3.978 13 H 0.122 0.878 14 N -0.362 5.362 15 C 0.342 3.658 16 O -0.409 6.409 17 C -0.135 4.135 18 C -0.090 4.090 19 C -0.136 4.136 20 C -0.014 4.014 21 C -0.180 4.180 22 C -0.059 4.059 23 N -0.200 5.200 24 C -0.012 4.012 25 C -0.126 4.126 26 C -0.036 4.036 27 C 0.002 3.998 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.233 0.767 34 H 0.150 0.850 35 H 0.155 0.845 36 H 0.158 0.842 37 H 0.172 0.828 38 H 0.185 0.815 39 H 0.168 0.832 40 H 0.043 0.957 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 26.555 -9.971 -0.197 28.366 hybrid contribution 0.366 -0.525 0.759 0.993 sum 26.920 -10.496 0.562 28.899 Atomic orbital electron populations 1.70885 1.05675 1.29301 1.51065 1.25884 0.96526 1.00932 0.98872 0.83807 0.73146 0.76199 0.76166 1.22952 1.22755 1.21338 1.20191 0.81500 0.96162 1.46983 0.90356 1.44738 1.05794 1.08489 1.74861 1.21988 0.89593 0.92085 0.97678 1.22864 0.98278 0.94238 1.01930 1.22391 0.83756 0.91525 1.00116 0.87832 1.45866 1.24773 1.16112 1.49424 1.18174 0.85246 0.81552 0.80827 1.90812 1.49429 1.65143 1.35470 1.20018 0.96353 0.95925 1.01231 1.21068 0.93314 0.99725 0.94860 1.20864 0.97889 0.93833 1.00981 1.18305 0.93960 0.94431 0.94710 1.21938 0.97434 0.96628 1.02031 1.22277 0.98023 0.92460 0.93185 1.67496 1.03854 1.37283 1.11397 1.23358 0.92705 0.90288 0.94842 1.19021 0.96444 0.96831 1.00305 1.21486 0.94081 0.92818 0.95259 1.21902 0.90232 0.92448 0.95268 0.92803 0.93219 0.95075 0.90554 0.91071 0.76707 0.85010 0.84472 0.84223 0.82844 0.81481 0.83216 0.95710 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.43 13.70 55.49 0.76 -28.67 16 2 C -0.02 -0.68 5.50 -17.43 -0.10 -0.78 16 3 Si 1.07 26.64 24.53 -169.99 -4.17 22.47 16 4 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 5 H -0.30 -7.09 6.84 56.52 0.39 -6.71 16 6 H -0.29 -6.42 5.43 56.52 0.31 -6.11 16 7 C -0.32 -9.34 10.56 -15.06 -0.16 -9.49 16 8 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16 9 N -0.61 -15.04 3.32 -169.93 -0.56 -15.61 16 10 C 0.11 2.36 4.62 -3.06 -0.01 2.34 16 11 C -0.13 -2.06 6.59 -24.89 -0.16 -2.23 16 12 C 0.13 2.08 3.44 -65.67 -0.23 1.85 16 13 H 0.10 1.87 7.54 -51.93 -0.39 1.47 16 14 N -0.71 -9.03 5.14 -52.58 -0.27 -9.30 16 15 C 0.56 7.64 7.76 -12.36 -0.10 7.54 16 16 O -0.53 -9.36 15.94 5.31 0.08 -9.28 16 17 C -0.13 -1.41 5.87 -104.97 -0.62 -2.03 16 18 C -0.07 -0.56 9.44 -39.53 -0.37 -0.94 16 19 C -0.12 -0.85 9.77 -39.62 -0.39 -1.24 16 20 C -0.01 -0.07 5.75 -106.74 -0.61 -0.69 16 21 C -0.16 -1.12 9.87 -39.40 -0.39 -1.51 16 22 C 0.08 0.64 11.07 -17.95 -0.20 0.44 16 23 N -0.49 -4.68 10.30 -13.12 -0.14 -4.82 16 24 C 0.16 1.38 11.05 -16.94 -0.19 1.19 16 25 C -0.12 -1.15 5.74 -106.87 -0.61 -1.77 16 26 C -0.02 -0.16 9.37 -38.75 -0.36 -0.52 16 27 C 0.13 2.64 6.93 -2.41 -0.02 2.62 16 28 H 0.26 8.24 8.73 -40.82 -0.36 7.88 16 29 H 0.05 1.10 6.78 -51.93 -0.35 0.75 16 30 H 0.03 0.69 3.81 -51.93 -0.20 0.50 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.92 8.00 -51.93 -0.42 0.51 16 33 H 0.40 3.72 6.54 -40.82 -0.27 3.46 16 34 H 0.13 0.76 6.34 -52.49 -0.33 0.42 16 35 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 36 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 39 H 0.15 1.45 7.61 -52.49 -0.40 1.05 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 335.72 15.07 5.06 5.06 Total: -1.00 -36.02 335.72 -8.75 -44.77 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.00 Total: 0.57 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -4.51 Total: -5.19 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -0.21 Total: -58.39 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.08 Total: -9.28 kcal Atomic # 14 Polarization: 26.64 SS G_CDS: -4.17 Total: 22.47 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.02 -8.75 -44.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015949071.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.251 kcal (2) G-P(sol) polarization free energy of solvation -36.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds