Wall clock time and date at job start Fri Apr 10 2020 22:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86792 * 119.99787 * 2 1 4 4 H 1.48501 * 109.47512 * 5.28213 * 3 2 1 5 5 H 1.48508 * 109.47127 * 125.28124 * 3 2 1 6 6 H 1.48495 * 109.47289 * 245.27790 * 3 2 1 7 7 C 1.38813 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00116 * 345.68521 * 7 2 1 9 9 N 1.36935 * 119.99633 * 165.68026 * 7 2 1 10 10 C 1.47020 * 125.64918 * 348.93623 * 9 7 2 11 11 C 1.54334 * 107.26790 * 181.02250 * 10 9 7 12 12 C 1.55154 * 102.94217 * 22.19151 * 11 10 9 13 13 H 1.09007 * 111.00283 * 82.57376 * 12 11 10 14 14 N 1.46501 * 111.00325 * 206.41962 * 12 11 10 15 15 C 1.34771 * 120.00244 * 205.00052 * 14 12 11 16 16 O 1.21563 * 120.00072 * 0.02562 * 15 14 12 17 17 C 1.47774 * 120.00288 * 180.02562 * 15 14 12 18 18 C 1.40649 * 119.69284 * 359.72723 * 17 15 14 19 19 C 1.35853 * 120.86977 * 179.74668 * 18 17 15 20 20 C 1.40398 * 119.84641 * 0.52650 * 19 18 17 21 21 C 1.40634 * 121.96897 * 179.73886 * 20 19 18 22 22 C 1.36218 * 118.72823 * 180.02562 * 21 20 19 23 23 N 1.32599 * 121.89817 * 359.96036 * 22 21 20 24 24 C 1.31238 * 122.74600 * 0.02562 * 23 22 21 25 25 C 1.40546 * 119.88639 * 0.02562 * 24 23 22 26 26 C 1.38567 * 119.70100 * 179.97438 * 17 15 14 27 27 C 1.47431 * 125.64442 * 168.63009 * 9 7 2 28 28 H 0.97003 * 119.99939 * 174.92863 * 1 2 3 29 29 H 1.09000 * 109.88648 * 300.43561 * 10 9 7 30 30 H 1.08994 * 109.88344 * 61.45505 * 10 9 7 31 31 H 1.09000 * 110.71694 * 140.55842 * 11 10 9 32 32 H 1.09003 * 110.71603 * 263.82944 * 11 10 9 33 33 H 0.97002 * 119.99662 * 25.00694 * 14 12 11 34 34 H 1.07991 * 119.56821 * 359.97438 * 18 17 15 35 35 H 1.08006 * 120.07736 * 180.23964 * 19 18 17 36 36 H 1.08001 * 120.63684 * 359.97438 * 21 20 19 37 37 H 1.07997 * 119.05118 * 179.97438 * 22 21 20 38 38 H 1.07991 * 120.06007 * 179.97438 * 24 23 22 39 39 H 1.08000 * 120.34053 * 0.02562 * 26 17 15 40 40 H 1.08998 * 110.35883 * 274.74557 * 27 9 7 41 41 H 1.09000 * 110.36735 * 37.06529 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2903 2.7435 0.1289 5 1 3.1980 1.6421 1.1430 6 1 3.0047 1.7537 -1.2717 7 6 2.0102 -1.2022 0.0005 8 1 1.4954 -2.1228 0.2322 9 7 3.3477 -1.2206 -0.2928 10 6 4.1196 -0.0973 -0.8439 11 6 5.5709 -0.5875 -1.0323 12 6 5.4101 -2.1288 -1.1076 13 1 5.1300 -2.4438 -2.1129 14 7 6.6327 -2.8064 -0.6689 15 6 6.9078 -4.0508 -1.1071 16 8 6.1416 -4.6110 -1.8667 17 6 8.1407 -4.7345 -0.6642 18 6 9.0256 -4.0782 0.2102 19 6 10.1632 -4.6862 0.6366 20 6 10.4709 -5.9824 0.1935 21 6 11.6386 -6.6513 0.6020 22 6 11.8721 -7.9079 0.1308 23 7 11.0317 -8.5132 -0.6972 24 6 9.9237 -7.9513 -1.1202 25 6 9.5893 -6.6543 -0.6942 26 6 8.4171 -6.0142 -1.1182 27 6 4.2533 -2.3683 -0.1022 28 1 -0.4850 -0.8368 -0.0743 29 1 3.7023 0.2032 -1.8050 30 1 4.0970 0.7435 -0.1508 31 1 5.9923 -0.1979 -1.9590 32 1 6.1871 -0.3053 -0.1785 33 1 7.2442 -2.3593 -0.0630 34 1 8.7958 -3.0793 0.5501 35 1 10.8317 -4.1718 1.3111 36 1 12.3372 -6.1775 1.2756 37 1 12.7674 -8.4262 0.4408 38 1 9.2704 -8.4841 -1.7950 39 1 7.7369 -6.5124 -1.7930 40 1 4.6330 -2.3862 0.9193 41 1 3.7378 -3.3007 -0.3326 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015949071.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:22 Heat of formation + Delta-G solvation = 32.335895 kcal Electronic energy + Delta-G solvation = -24259.698934 eV Core-core repulsion = 20718.408590 eV Total energy + Delta-G solvation = -3541.290344 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.97091 -40.96019 -39.31382 -37.96261 -35.85432 -34.25136 -34.01158 -32.45379 -31.18377 -30.73839 -29.56254 -26.39456 -25.28663 -24.95640 -23.33777 -22.73328 -22.33681 -21.74646 -19.84361 -19.28045 -18.74268 -18.00401 -17.35084 -17.11723 -16.74419 -16.13721 -16.08361 -15.92116 -15.52533 -15.18173 -15.17730 -14.85118 -14.54287 -14.38551 -14.29086 -14.16775 -13.94072 -13.23681 -13.07600 -13.06379 -12.87907 -12.52888 -12.33727 -12.30660 -11.76836 -11.42712 -11.25151 -11.22575 -11.06118 -10.72873 -10.52281 -10.32621 -10.12879 -9.14446 -9.11106 -8.69385 -5.52542 -0.83483 -0.34123 0.75493 1.41115 1.47242 1.52382 1.74136 1.94374 2.28979 2.56826 3.04147 3.10144 3.27596 3.43939 3.46440 3.57490 3.63975 3.68008 3.82407 3.86005 3.98990 4.04162 4.07447 4.27752 4.32059 4.47130 4.64164 4.66955 4.68324 4.78143 4.80361 4.84194 4.88415 4.92460 4.99886 5.14852 5.17675 5.30121 5.37558 5.52050 5.60579 5.70712 6.05623 6.44918 6.78750 6.94131 7.11108 7.38654 8.03454 8.83117 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.036788 B = 0.002520 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.940214 B =11107.124967 C =11477.041482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.083 4.083 3 Si 1.115 2.885 4 H -0.314 1.314 5 H -0.276 1.276 6 H -0.244 1.244 7 C -0.317 4.317 8 H 0.036 0.964 9 N -0.633 5.633 10 C 0.097 3.903 11 C -0.115 4.115 12 C 0.144 3.856 13 H 0.083 0.917 14 N -0.694 5.694 15 C 0.555 3.445 16 O -0.580 6.580 17 C -0.144 4.144 18 C -0.073 4.073 19 C -0.106 4.106 20 C -0.023 4.023 21 C -0.152 4.152 22 C 0.070 3.930 23 N -0.515 5.515 24 C 0.147 3.853 25 C -0.136 4.136 26 C -0.025 4.025 27 C 0.125 3.875 28 H 0.245 0.755 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.419 0.581 34 H 0.160 0.840 35 H 0.174 0.826 36 H 0.175 0.825 37 H 0.178 0.822 38 H 0.180 0.820 39 H 0.140 0.860 40 H 0.039 0.961 41 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.052 -8.624 1.500 33.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.275 4.275 3 Si 0.941 3.059 4 H -0.243 1.243 5 H -0.203 1.203 6 H -0.169 1.169 7 C -0.446 4.446 8 H 0.055 0.945 9 N -0.361 5.361 10 C -0.027 4.027 11 C -0.153 4.153 12 C 0.037 3.963 13 H 0.101 0.899 14 N -0.346 5.346 15 C 0.344 3.656 16 O -0.461 6.461 17 C -0.147 4.147 18 C -0.093 4.093 19 C -0.123 4.123 20 C -0.028 4.028 21 C -0.171 4.171 22 C -0.073 4.073 23 N -0.223 5.223 24 C -0.024 4.024 25 C -0.138 4.138 26 C -0.046 4.046 27 C -0.002 4.002 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.258 0.742 34 H 0.178 0.822 35 H 0.191 0.809 36 H 0.192 0.808 37 H 0.196 0.804 38 H 0.197 0.803 39 H 0.158 0.842 40 H 0.056 0.944 41 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 31.601 -8.243 0.852 32.670 hybrid contribution -1.146 -1.293 0.474 1.792 sum 30.456 -9.537 1.326 31.941 Atomic orbital electron populations 1.71006 1.07103 1.28345 1.54212 1.27412 0.96491 1.04973 0.98595 0.83365 0.72586 0.71075 0.78849 1.24300 1.20277 1.16916 1.20040 0.84075 0.94663 1.45777 0.94550 1.44770 1.04952 1.11127 1.75244 1.22227 0.92606 0.91224 0.96690 1.22850 0.94922 0.92116 1.05402 1.21907 0.83622 0.93131 0.97597 0.89904 1.45588 1.23684 1.15786 1.49553 1.18691 0.85684 0.81438 0.79836 1.90793 1.51290 1.66270 1.37738 1.19853 0.95789 0.96136 1.02947 1.21296 0.92989 1.00813 0.94165 1.21252 0.97720 0.93027 1.00334 1.18690 0.94347 0.95309 0.94501 1.22293 0.97107 0.96122 1.01584 1.22780 0.98503 0.93197 0.92794 1.67519 1.04381 1.38152 1.12285 1.23596 0.92996 0.90484 0.95299 1.19097 0.96479 0.97209 1.01063 1.21489 0.94534 0.93078 0.95506 1.22028 0.91015 0.89877 0.97248 0.94610 0.94342 0.94598 0.87132 0.87312 0.74186 0.82230 0.80867 0.80804 0.80449 0.80332 0.84191 0.94355 0.96456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.55 13.70 21.65 0.30 -63.25 16 2 C -0.08 -5.04 5.50 84.86 0.47 -4.57 16 3 Si 1.12 52.77 24.53 68.60 1.68 54.45 16 4 H -0.31 -15.40 7.11 99.48 0.71 -14.69 16 5 H -0.28 -11.93 6.84 99.48 0.68 -11.25 16 6 H -0.24 -9.92 5.43 99.48 0.54 -9.38 16 7 C -0.32 -19.12 10.56 84.03 0.89 -18.23 16 8 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 9 N -0.63 -31.12 3.32 -691.55 -2.30 -33.42 16 10 C 0.10 3.80 4.62 86.73 0.40 4.20 16 11 C -0.11 -2.98 6.59 31.79 0.21 -2.77 16 12 C 0.14 4.42 3.44 46.46 0.16 4.58 16 13 H 0.08 2.94 7.54 -2.38 -0.02 2.93 16 14 N -0.69 -15.76 5.14 -438.54 -2.26 -18.01 16 15 C 0.55 14.80 7.76 86.77 0.67 15.47 16 16 O -0.58 -21.09 15.94 -3.91 -0.06 -21.15 16 17 C -0.14 -2.87 5.87 -20.09 -0.12 -2.99 16 18 C -0.07 -0.91 9.44 22.30 0.21 -0.70 16 19 C -0.11 -1.08 9.77 22.24 0.22 -0.86 16 20 C -0.02 -0.33 5.75 -21.23 -0.12 -0.45 16 21 C -0.15 -1.57 9.87 22.38 0.22 -1.35 16 22 C 0.07 0.90 11.07 84.11 0.93 1.83 16 23 N -0.52 -9.28 10.30 -195.42 -2.01 -11.29 16 24 C 0.15 2.52 11.05 85.34 0.94 3.46 16 25 C -0.14 -2.42 5.74 -21.32 -0.12 -2.54 16 26 C -0.03 -0.50 9.37 22.81 0.21 -0.29 16 27 C 0.12 5.11 6.93 86.93 0.60 5.72 16 28 H 0.25 16.39 8.73 -92.71 -0.81 15.58 16 29 H 0.04 1.60 6.78 -2.39 -0.02 1.58 16 30 H 0.04 1.43 3.81 -2.39 -0.01 1.42 16 31 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.11 2.08 8.00 -2.39 -0.02 2.06 16 33 H 0.42 5.90 6.54 -92.71 -0.61 5.29 16 34 H 0.16 0.99 6.34 -2.92 -0.02 0.97 16 35 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 36 H 0.17 0.53 8.06 -2.91 -0.02 0.51 16 37 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 38 H 0.18 2.29 8.06 -2.92 -0.02 2.27 16 39 H 0.14 2.94 7.61 -2.91 -0.02 2.92 16 40 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -84.78 335.72 1.36 -83.42 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 0.23 Total: 8.74 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 5.77 Total: 0.50 kcal Atomic # 7 Polarization: -119.70 SS G_CDS: -6.27 Total: -125.97 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.06 Total: -21.15 kcal Atomic # 14 Polarization: 52.77 SS G_CDS: 1.68 Total: 54.45 kcal Total: -84.78 1.36 -83.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015949071.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.755 kcal (2) G-P(sol) polarization free energy of solvation -84.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds