Wall clock time and date at job start Fri Apr 10 2020 22:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99568 * 2 1 4 4 H 1.48500 * 109.47099 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47333 * 300.00313 * 3 2 1 6 6 H 1.48505 * 109.46843 * 60.00081 * 3 2 1 7 7 C 1.38804 * 120.00592 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00431 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99850 * 0.02562 * 7 2 1 10 10 C 1.47021 * 125.65068 * 359.97248 * 9 7 2 11 11 C 1.54324 * 107.27137 * 178.96205 * 10 9 7 12 12 C 1.55150 * 102.94693 * 337.80758 * 11 10 9 13 13 H 1.09000 * 111.00186 * 277.39317 * 12 11 10 14 14 N 1.46493 * 111.00751 * 153.57492 * 12 11 10 15 15 C 1.34774 * 120.00500 * 155.00471 * 14 12 11 16 16 O 1.21556 * 119.99442 * 359.97438 * 15 14 12 17 17 C 1.47890 * 120.00493 * 180.02562 * 15 14 12 18 18 C 1.40600 * 119.72742 * 0.02562 * 17 15 14 19 19 C 1.35841 * 120.94862 * 179.97438 * 18 17 15 20 20 C 1.40495 * 119.88226 * 359.97438 * 19 18 17 21 21 C 1.40487 * 121.83725 * 179.97438 * 20 19 18 22 22 N 1.31206 * 119.94134 * 179.97438 * 21 20 19 23 23 C 1.32568 * 122.80086 * 0.02562 * 22 21 20 24 24 C 1.36220 * 121.84639 * 359.97438 * 23 22 21 25 25 C 1.40764 * 118.67614 * 359.72665 * 24 23 22 26 26 C 1.38531 * 119.72856 * 179.97438 * 17 15 14 27 27 C 1.47426 * 125.65040 * 180.02562 * 9 7 2 28 28 H 0.96996 * 120.00581 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.88008 * 59.54853 * 10 9 7 30 30 H 1.08999 * 109.88153 * 298.38364 * 10 9 7 31 31 H 1.09001 * 110.71734 * 219.43983 * 11 10 9 32 32 H 1.09003 * 110.86736 * 96.24543 * 11 10 9 33 33 H 0.97003 * 119.99682 * 335.00240 * 14 12 11 34 34 H 1.07998 * 119.52167 * 0.02562 * 18 17 15 35 35 H 1.08003 * 120.05793 * 179.97438 * 19 18 17 36 36 H 1.08005 * 120.02865 * 0.02562 * 21 20 19 37 37 H 1.07999 * 119.07249 * 179.97438 * 23 22 21 38 38 H 1.08000 * 120.65881 * 180.02562 * 24 23 22 39 39 H 1.08002 * 120.36316 * 0.02562 * 26 17 15 40 40 H 1.08998 * 110.36843 * 85.26448 * 27 9 7 41 41 H 1.09009 * 110.36473 * 322.94503 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8912 2.3966 -1.2125 6 1 1.8912 2.3965 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3258 -2.3880 -0.0016 10 6 -0.1373 -2.5328 -0.0017 11 6 -0.4481 -4.0442 -0.0298 12 6 0.8523 -4.6556 -0.6149 13 1 0.8569 -4.5955 -1.7032 14 7 1.0296 -6.0393 -0.1675 15 6 1.7599 -6.8981 -0.9061 16 8 2.2711 -6.5246 -1.9438 17 6 1.9385 -8.2950 -0.4547 18 6 1.3433 -8.7213 0.7456 19 6 1.4907 -9.9988 1.1833 20 6 2.2468 -10.9135 0.4312 21 6 2.4263 -12.2439 0.8454 22 7 3.1396 -13.0670 0.1137 23 6 3.7149 -12.7022 -1.0236 24 6 3.6017 -11.4358 -1.5125 25 6 2.8460 -10.4963 -0.7860 26 6 2.6898 -9.1731 -1.2186 27 6 1.9337 -3.7310 -0.0017 28 1 -0.4851 0.8400 0.0004 29 1 -0.5574 -2.0516 -0.8849 30 1 -0.5542 -2.0853 0.9005 31 1 -1.2981 -4.2511 -0.6799 32 1 -0.6330 -4.4213 0.9761 33 1 0.6214 -6.3373 0.6604 34 1 0.7599 -8.0233 1.3276 35 1 1.0275 -10.3108 2.1077 36 1 1.9770 -12.5891 1.7649 37 1 4.2894 -13.4295 -1.5779 38 1 4.0782 -11.1595 -2.4415 39 1 3.1454 -8.8426 -2.1404 40 1 2.1662 -4.0423 1.0167 41 1 2.8336 -3.7400 -0.6168 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015955940.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:26 Heat of formation + Delta-G solvation = 48.694947 kcal Electronic energy + Delta-G solvation = -24154.601510 eV Core-core repulsion = 20614.020548 eV Total energy + Delta-G solvation = -3540.580962 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.22769 -39.77171 -37.63732 -36.93726 -34.22673 -33.34367 -32.22743 -31.33829 -29.98112 -29.19076 -27.31884 -25.29194 -24.23756 -24.12133 -22.62712 -21.22077 -20.44862 -20.05114 -18.53593 -17.97270 -17.09922 -16.79735 -16.36408 -15.85910 -15.29530 -14.99357 -14.68834 -14.47877 -14.27078 -14.14611 -13.98979 -13.91427 -13.18981 -12.98440 -12.66380 -12.46201 -12.42802 -12.16374 -11.84548 -11.46761 -11.06131 -10.94164 -10.79748 -10.61752 -10.43432 -10.09896 -9.99374 -9.94453 -9.80834 -9.71319 -9.46273 -8.83587 -8.62497 -8.46477 -6.86790 -5.73732 -3.07423 -0.12419 0.33560 1.49449 2.28099 3.13763 3.21995 3.39697 3.45560 3.47949 3.75355 4.02139 4.14086 4.32103 4.38520 4.47907 4.55370 4.64112 4.80014 4.86162 5.18989 5.24536 5.30669 5.35121 5.41503 5.54211 5.57860 5.65539 5.69549 5.74941 5.89521 5.94923 6.12795 6.22186 6.26304 6.35461 6.37219 6.51720 6.64824 6.90532 7.50149 7.54511 7.57573 7.58688 7.79116 8.20489 8.25488 9.19514 9.79267 10.43758 11.38279 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.036133 B = 0.002378 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.718599 B =11771.250303 C =12073.044387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.149 4.149 12 C 0.126 3.874 13 H 0.099 0.901 14 N -0.708 5.708 15 C 0.552 3.448 16 O -0.532 6.532 17 C -0.107 4.107 18 C -0.093 4.093 19 C -0.091 4.091 20 C -0.099 4.099 21 C 0.143 3.857 22 N -0.485 5.485 23 C 0.071 3.929 24 C -0.143 4.143 25 C -0.034 4.034 26 C -0.045 4.045 27 C 0.129 3.871 28 H 0.252 0.748 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.397 0.603 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.165 0.835 37 H 0.155 0.845 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.020 0.980 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.283 -24.623 2.027 24.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.188 4.188 12 C 0.021 3.979 13 H 0.117 0.883 14 N -0.358 5.358 15 C 0.338 3.662 16 O -0.410 6.410 17 C -0.111 4.111 18 C -0.112 4.112 19 C -0.111 4.111 20 C -0.101 4.101 21 C -0.029 4.029 22 N -0.193 5.193 23 C -0.072 4.072 24 C -0.163 4.163 25 C -0.039 4.039 26 C -0.064 4.064 27 C 0.002 3.998 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.232 0.768 34 H 0.151 0.849 35 H 0.158 0.842 36 H 0.182 0.818 37 H 0.172 0.828 38 H 0.160 0.840 39 H 0.165 0.835 40 H 0.038 0.962 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.798 -24.978 1.418 25.083 hybrid contribution 0.091 1.673 0.169 1.684 sum 1.889 -23.305 1.587 23.435 Atomic orbital electron populations 1.69950 1.04880 1.25005 1.57282 1.24809 0.95769 0.97718 1.02213 0.86017 0.78753 0.83607 0.77231 1.20472 1.21697 1.21747 1.19118 0.90540 0.82218 1.43568 0.90304 1.44400 1.01630 0.99781 1.87256 1.21154 0.84535 0.87361 1.01560 1.23194 0.95819 1.00082 0.99745 1.22389 0.97081 0.78218 1.00222 0.88296 1.45945 1.52352 1.11697 1.25842 1.18225 0.79046 0.84838 0.84114 1.90801 1.48081 1.78290 1.23822 1.20141 1.00283 0.94410 0.96283 1.21023 0.98507 0.96559 0.95065 1.20880 0.97841 0.92733 0.99621 1.19164 0.99385 0.96148 0.95439 1.23256 0.93341 0.88154 0.98128 1.67393 1.07885 1.37892 1.06129 1.22205 0.97488 0.94963 0.92541 1.22021 0.99089 0.94200 1.00977 1.18155 0.97188 0.94199 0.94376 1.21464 0.94993 0.90716 0.99230 1.21828 0.94810 0.86186 0.97008 0.93754 0.93160 0.93496 0.91519 0.92021 0.76764 0.84933 0.84238 0.81757 0.82810 0.84038 0.83476 0.96229 0.93832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.96 10.31 55.49 0.57 -26.38 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.60 -15.47 3.39 -170.06 -0.58 -16.05 16 10 C 0.18 4.23 5.37 -3.06 -0.02 4.21 16 11 C -0.15 -2.60 6.60 -24.90 -0.16 -2.76 16 12 C 0.13 2.23 3.42 -65.78 -0.23 2.00 16 13 H 0.10 1.95 7.54 -51.93 -0.39 1.56 16 14 N -0.71 -9.78 5.15 -52.65 -0.27 -10.06 16 15 C 0.55 8.11 7.77 -12.31 -0.10 8.01 16 16 O -0.53 -9.89 15.94 5.32 0.08 -9.81 16 17 C -0.11 -1.22 5.87 -104.95 -0.62 -1.84 16 18 C -0.09 -0.80 9.44 -39.55 -0.37 -1.17 16 19 C -0.09 -0.67 9.77 -39.59 -0.39 -1.06 16 20 C -0.10 -0.88 5.75 -106.78 -0.61 -1.49 16 21 C 0.14 1.15 11.04 -16.97 -0.19 0.96 16 22 N -0.49 -4.64 10.29 -13.14 -0.14 -4.77 16 23 C 0.07 0.59 11.07 -17.96 -0.20 0.39 16 24 C -0.14 -1.20 9.88 -39.35 -0.39 -1.59 16 25 C -0.03 -0.34 5.74 -106.83 -0.61 -0.95 16 26 C -0.05 -0.49 9.38 -38.78 -0.36 -0.86 16 27 C 0.13 2.74 6.93 -2.52 -0.02 2.73 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 30 H 0.05 1.21 7.51 -51.93 -0.39 0.82 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.94 8.00 -51.93 -0.42 0.52 16 33 H 0.40 4.19 6.55 -40.82 -0.27 3.92 16 34 H 0.13 0.85 6.34 -52.49 -0.33 0.51 16 35 H 0.14 0.59 8.06 -52.48 -0.42 0.16 16 36 H 0.17 0.80 8.06 -52.48 -0.42 0.37 16 37 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.15 1.61 7.62 -52.49 -0.40 1.21 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.04 0.97 8.14 -51.92 -0.42 0.55 16 LS Contribution 343.49 15.07 5.18 5.18 Total: -1.00 -34.17 343.49 -9.77 -43.95 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.09 Total: 1.05 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -4.51 Total: -0.29 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.41 Total: -57.26 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.17 -9.77 -43.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015955940.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.640 kcal (2) G-P(sol) polarization free energy of solvation -34.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds