Wall clock time and date at job start Fri Apr 10 2020 22:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99568 * 2 1 4 4 H 1.48500 * 109.47099 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47333 * 300.00313 * 3 2 1 6 6 H 1.48505 * 109.46843 * 60.00081 * 3 2 1 7 7 C 1.38804 * 120.00592 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00431 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99850 * 0.02562 * 7 2 1 10 10 C 1.47021 * 125.65068 * 359.97248 * 9 7 2 11 11 C 1.54324 * 107.27137 * 178.96205 * 10 9 7 12 12 C 1.55150 * 102.94693 * 337.80758 * 11 10 9 13 13 H 1.09000 * 111.00186 * 277.39317 * 12 11 10 14 14 N 1.46493 * 111.00751 * 153.57492 * 12 11 10 15 15 C 1.34774 * 120.00500 * 155.00471 * 14 12 11 16 16 O 1.21556 * 119.99442 * 359.97438 * 15 14 12 17 17 C 1.47890 * 120.00493 * 180.02562 * 15 14 12 18 18 C 1.40600 * 119.72742 * 0.02562 * 17 15 14 19 19 C 1.35841 * 120.94862 * 179.97438 * 18 17 15 20 20 C 1.40495 * 119.88226 * 359.97438 * 19 18 17 21 21 C 1.40487 * 121.83725 * 179.97438 * 20 19 18 22 22 N 1.31206 * 119.94134 * 179.97438 * 21 20 19 23 23 C 1.32568 * 122.80086 * 0.02562 * 22 21 20 24 24 C 1.36220 * 121.84639 * 359.97438 * 23 22 21 25 25 C 1.40764 * 118.67614 * 359.72665 * 24 23 22 26 26 C 1.38531 * 119.72856 * 179.97438 * 17 15 14 27 27 C 1.47426 * 125.65040 * 180.02562 * 9 7 2 28 28 H 0.96996 * 120.00581 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.88008 * 59.54853 * 10 9 7 30 30 H 1.08999 * 109.88153 * 298.38364 * 10 9 7 31 31 H 1.09001 * 110.71734 * 219.43983 * 11 10 9 32 32 H 1.09003 * 110.86736 * 96.24543 * 11 10 9 33 33 H 0.97003 * 119.99682 * 335.00240 * 14 12 11 34 34 H 1.07998 * 119.52167 * 0.02562 * 18 17 15 35 35 H 1.08003 * 120.05793 * 179.97438 * 19 18 17 36 36 H 1.08005 * 120.02865 * 0.02562 * 21 20 19 37 37 H 1.07999 * 119.07249 * 179.97438 * 23 22 21 38 38 H 1.08000 * 120.65881 * 180.02562 * 24 23 22 39 39 H 1.08002 * 120.36316 * 0.02562 * 26 17 15 40 40 H 1.08998 * 110.36843 * 85.26448 * 27 9 7 41 41 H 1.09009 * 110.36473 * 322.94503 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8912 2.3966 -1.2125 6 1 1.8912 2.3965 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3258 -2.3880 -0.0016 10 6 -0.1373 -2.5328 -0.0017 11 6 -0.4481 -4.0442 -0.0298 12 6 0.8523 -4.6556 -0.6149 13 1 0.8569 -4.5955 -1.7032 14 7 1.0296 -6.0393 -0.1675 15 6 1.7599 -6.8981 -0.9061 16 8 2.2711 -6.5246 -1.9438 17 6 1.9385 -8.2950 -0.4547 18 6 1.3433 -8.7213 0.7456 19 6 1.4907 -9.9988 1.1833 20 6 2.2468 -10.9135 0.4312 21 6 2.4263 -12.2439 0.8454 22 7 3.1396 -13.0670 0.1137 23 6 3.7149 -12.7022 -1.0236 24 6 3.6017 -11.4358 -1.5125 25 6 2.8460 -10.4963 -0.7860 26 6 2.6898 -9.1731 -1.2186 27 6 1.9337 -3.7310 -0.0017 28 1 -0.4851 0.8400 0.0004 29 1 -0.5574 -2.0516 -0.8849 30 1 -0.5542 -2.0853 0.9005 31 1 -1.2981 -4.2511 -0.6799 32 1 -0.6330 -4.4213 0.9761 33 1 0.6214 -6.3373 0.6604 34 1 0.7599 -8.0233 1.3276 35 1 1.0275 -10.3108 2.1077 36 1 1.9770 -12.5891 1.7649 37 1 4.2894 -13.4295 -1.5779 38 1 4.0782 -11.1595 -2.4415 39 1 3.1454 -8.8426 -2.1404 40 1 2.1662 -4.0423 1.0167 41 1 2.8336 -3.7400 -0.6168 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015955940.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:25 Heat of formation + Delta-G solvation = 26.288599 kcal Electronic energy + Delta-G solvation = -24155.573122 eV Core-core repulsion = 20614.020548 eV Total energy + Delta-G solvation = -3541.552574 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.94995 -40.90572 -39.05369 -37.91845 -35.75228 -34.07505 -33.83546 -32.36570 -30.96750 -30.62635 -28.94364 -26.76488 -25.61262 -24.78527 -23.33446 -22.43726 -21.99092 -21.68125 -19.55074 -18.93325 -18.58853 -17.77579 -17.31302 -17.05205 -16.65641 -16.18436 -15.90947 -15.84270 -15.51618 -15.17300 -14.80975 -14.60618 -14.50053 -14.19734 -13.99129 -13.85079 -13.69573 -13.42999 -13.07036 -12.95216 -12.80393 -12.44909 -12.14977 -12.08983 -12.00824 -11.83939 -11.59928 -11.25352 -11.17473 -10.74158 -10.51517 -10.32379 -10.05676 -9.11260 -8.93640 -7.88219 -5.24325 -0.82918 -0.33782 0.81528 1.44669 1.46077 1.46552 1.56500 1.96773 2.31022 2.48644 3.06384 3.30511 3.45070 3.50723 3.54069 3.65107 3.75745 3.80309 3.88035 4.00686 4.02658 4.08786 4.18249 4.31255 4.56505 4.61378 4.67173 4.70271 4.76413 4.85109 4.93531 4.96079 5.03588 5.04910 5.21632 5.27146 5.40842 5.46154 5.62381 5.63312 5.72188 5.73066 6.17097 6.47303 6.96803 7.07595 7.12282 7.72862 8.35859 9.22013 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.036133 B = 0.002378 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.718599 B =11771.250303 C =12073.044387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.979 3.021 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.245 4.245 8 H 0.077 0.923 9 N -0.626 5.626 10 C 0.183 3.817 11 C -0.127 4.127 12 C 0.145 3.855 13 H 0.076 0.924 14 N -0.692 5.692 15 C 0.552 3.448 16 O -0.580 6.580 17 C -0.117 4.117 18 C -0.100 4.100 19 C -0.073 4.073 20 C -0.110 4.110 21 C 0.147 3.853 22 N -0.508 5.508 23 C 0.066 3.934 24 C -0.153 4.153 25 C -0.050 4.050 26 C -0.058 4.058 27 C 0.128 3.872 28 H 0.249 0.751 29 H 0.013 0.987 30 H 0.019 0.981 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.417 0.583 34 H 0.159 0.841 35 H 0.181 0.819 36 H 0.200 0.800 37 H 0.175 0.825 38 H 0.155 0.845 39 H 0.135 0.865 40 H 0.035 0.965 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.892 -26.894 3.939 27.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.256 4.256 3 Si 0.807 3.193 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.374 4.374 8 H 0.095 0.905 9 N -0.353 5.353 10 C 0.058 3.942 11 C -0.166 4.166 12 C 0.038 3.962 13 H 0.094 0.906 14 N -0.344 5.344 15 C 0.340 3.660 16 O -0.461 6.461 17 C -0.122 4.122 18 C -0.118 4.118 19 C -0.092 4.092 20 C -0.112 4.112 21 C -0.025 4.025 22 N -0.216 5.216 23 C -0.076 4.076 24 C -0.173 4.173 25 C -0.055 4.055 26 C -0.077 4.077 27 C 0.001 3.999 28 H 0.058 0.942 29 H 0.031 0.969 30 H 0.038 0.962 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.257 0.743 34 H 0.176 0.824 35 H 0.198 0.802 36 H 0.216 0.784 37 H 0.192 0.808 38 H 0.173 0.827 39 H 0.152 0.848 40 H 0.053 0.947 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 1.407 -27.301 3.360 27.543 hybrid contribution 0.267 2.266 -0.423 2.321 sum 1.674 -25.035 2.937 25.263 Atomic orbital electron populations 1.70155 1.06111 1.25400 1.58029 1.25641 0.96733 1.00917 1.02344 0.85000 0.78028 0.79325 0.76898 1.19363 1.21808 1.21425 1.19443 0.90887 0.83731 1.43379 0.90508 1.44683 1.02747 1.00694 1.87177 1.20957 0.83365 0.91416 0.98465 1.23008 0.96087 0.95165 1.02327 1.21858 0.95838 0.79743 0.98741 0.90561 1.45642 1.52331 1.09811 1.26592 1.18760 0.77859 0.86088 0.83278 1.90780 1.49933 1.79376 1.25977 1.19955 1.01952 0.92259 0.98010 1.21242 0.98698 0.97781 0.94072 1.21309 0.96095 0.91574 1.00247 1.19470 0.99482 0.97044 0.95182 1.23825 0.92342 0.87521 0.98769 1.67462 1.08740 1.38638 1.06797 1.22576 0.97244 0.95312 0.92452 1.22218 0.99262 0.94186 1.01626 1.18331 0.97947 0.93814 0.95420 1.21441 0.95569 0.91564 0.99163 1.21945 0.95104 0.85306 0.97557 0.94177 0.96858 0.96250 0.89190 0.88607 0.74333 0.82386 0.80150 0.78383 0.80781 0.82731 0.84758 0.94746 0.95765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.86 10.31 21.65 0.22 -56.64 16 2 C -0.06 -3.64 5.49 84.86 0.47 -3.17 16 3 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 7 C -0.25 -14.13 10.28 84.03 0.86 -13.27 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 9 N -0.63 -32.78 3.39 -691.94 -2.35 -35.13 16 10 C 0.18 8.81 5.37 86.73 0.47 9.28 16 11 C -0.13 -4.21 6.60 31.78 0.21 -4.00 16 12 C 0.14 5.03 3.42 46.39 0.16 5.18 16 13 H 0.08 3.05 7.54 -2.39 -0.02 3.03 16 14 N -0.69 -17.89 5.15 -438.76 -2.26 -20.15 16 15 C 0.55 15.97 7.77 86.80 0.67 16.64 16 16 O -0.58 -22.24 15.94 -3.89 -0.06 -22.30 16 17 C -0.12 -2.56 5.87 -20.08 -0.12 -2.67 16 18 C -0.10 -1.39 9.44 22.29 0.21 -1.18 16 19 C -0.07 -0.78 9.77 22.26 0.22 -0.56 16 20 C -0.11 -1.64 5.75 -21.26 -0.12 -1.76 16 21 C 0.15 1.90 11.04 85.33 0.94 2.84 16 22 N -0.51 -8.57 10.29 -195.50 -2.01 -10.58 16 23 C 0.07 1.00 11.07 84.11 0.93 1.93 16 24 C -0.15 -2.44 9.88 22.42 0.22 -2.22 16 25 C -0.05 -0.94 5.74 -21.29 -0.12 -1.06 16 26 C -0.06 -1.28 9.38 22.79 0.21 -1.06 16 27 C 0.13 5.45 6.93 86.86 0.60 6.05 16 28 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.01 0.72 7.38 -2.39 -0.02 0.70 16 30 H 0.02 1.02 7.51 -2.39 -0.02 1.01 16 31 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.10 2.56 8.00 -2.39 -0.02 2.54 16 33 H 0.42 7.34 6.55 -92.71 -0.61 6.74 16 34 H 0.16 1.29 6.34 -2.91 -0.02 1.27 16 35 H 0.18 0.42 8.06 -2.91 -0.02 0.40 16 36 H 0.20 1.01 8.06 -2.91 -0.02 0.99 16 37 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 38 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 39 H 0.13 3.16 7.62 -2.91 -0.02 3.14 16 40 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -78.11 343.49 1.84 -76.27 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.46 Total: 9.18 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 5.81 Total: 10.97 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -6.40 Total: -122.49 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.06 Total: -22.30 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -78.11 1.84 -76.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015955940.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.555 kcal (2) G-P(sol) polarization free energy of solvation -78.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds