Wall clock time and date at job start Fri Apr 10 2020 22:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00196 * 2 1 4 4 H 1.48508 * 109.47067 * 270.00043 * 3 2 1 5 5 H 1.48496 * 109.47071 * 29.99620 * 3 2 1 6 6 H 1.48494 * 109.47223 * 150.00005 * 3 2 1 7 7 C 1.38812 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00201 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00235 * 359.97438 * 7 2 1 10 10 C 1.47025 * 125.64709 * 359.97438 * 9 7 2 11 11 C 1.54322 * 107.26947 * 178.98620 * 10 9 7 12 12 C 1.55154 * 102.94372 * 337.80938 * 11 10 9 13 13 H 1.09001 * 111.00514 * 153.61650 * 12 11 10 14 14 N 1.46504 * 111.00486 * 277.42663 * 12 11 10 15 15 C 1.34774 * 120.00123 * 204.99910 * 14 12 11 16 16 O 1.21552 * 120.00028 * 0.02562 * 15 14 12 17 17 C 1.47895 * 120.00003 * 180.02562 * 15 14 12 18 18 C 1.40598 * 119.72624 * 359.97438 * 17 15 14 19 19 C 1.35858 * 120.94997 * 180.02562 * 18 17 15 20 20 C 1.40493 * 119.87833 * 0.02562 * 19 18 17 21 21 C 1.40485 * 121.84579 * 180.02562 * 20 19 18 22 22 N 1.31215 * 119.93842 * 179.97438 * 21 20 19 23 23 C 1.32553 * 122.81059 * 0.02562 * 22 21 20 24 24 C 1.36221 * 121.84285 * 359.97438 * 23 22 21 25 25 C 1.40762 * 118.67421 * 0.02562 * 24 23 22 26 26 C 1.38530 * 119.73154 * 180.02562 * 17 15 14 27 27 C 1.47426 * 125.64978 * 180.02562 * 9 7 2 28 28 H 0.97001 * 120.00237 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.87993 * 59.57040 * 10 9 7 30 30 H 1.08998 * 109.88063 * 298.40676 * 10 9 7 31 31 H 1.08998 * 110.71687 * 219.44540 * 11 10 9 32 32 H 1.09000 * 110.72288 * 96.17406 * 11 10 9 33 33 H 0.96998 * 119.99588 * 24.99916 * 14 12 11 34 34 H 1.07993 * 119.52822 * 0.02695 * 18 17 15 35 35 H 1.07996 * 120.06058 * 180.02562 * 19 18 17 36 36 H 1.07998 * 120.03683 * 359.70717 * 21 20 19 37 37 H 1.08000 * 119.08319 * 179.97438 * 23 22 21 38 38 H 1.07999 * 120.66576 * 180.02562 * 24 23 22 39 39 H 1.07996 * 120.36364 * 0.02562 * 26 17 15 40 40 H 1.09004 * 110.36802 * 85.24279 * 27 9 7 41 41 H 1.08994 * 110.36756 * 322.92288 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5328 0.0005 11 6 -0.4485 -4.0441 -0.0260 12 6 0.8514 -4.6561 -0.6115 13 1 0.9832 -5.6856 -0.2784 14 7 0.8571 -4.5758 -2.0743 15 6 1.5885 -5.4494 -2.7944 16 8 2.2431 -6.3041 -2.2301 17 6 1.5947 -5.3679 -4.2710 18 6 0.8350 -4.3773 -4.9178 19 6 0.8222 -4.2802 -6.2729 20 6 1.5757 -5.1791 -7.0461 21 6 1.5929 -5.1160 -8.4495 22 7 2.3106 -5.9745 -9.1348 23 6 3.0382 -6.9222 -8.5609 24 6 3.0896 -7.0684 -7.2075 25 6 2.3455 -6.1841 -6.4039 26 6 2.3480 -6.2690 -5.0057 27 6 1.9334 -3.7312 -0.0005 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5582 -2.0522 -0.8828 30 1 -0.5537 -2.0844 0.9027 31 1 -1.2990 -4.2515 -0.6754 32 1 -0.6311 -4.4181 0.9815 33 1 0.3345 -3.8939 -2.5246 34 1 0.2534 -3.6835 -4.3290 35 1 0.2338 -3.5134 -6.7547 36 1 1.0126 -4.3644 -8.9640 37 1 3.6062 -7.5974 -9.1837 38 1 3.6892 -7.8472 -6.7600 39 1 2.9295 -7.0295 -4.5059 40 1 2.1670 -4.0419 1.0178 41 1 2.8325 -3.7406 -0.6166 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015955941.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:36:30 Heat of formation + Delta-G solvation = 47.656981 kcal Electronic energy + Delta-G solvation = -24675.672462 eV Core-core repulsion = 21135.046491 eV Total energy + Delta-G solvation = -3540.625972 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.09755 -39.69259 -37.61647 -36.84004 -33.93066 -33.21067 -32.17278 -31.18278 -29.84393 -29.21527 -27.40710 -25.20540 -24.30661 -23.99935 -22.53187 -21.23938 -20.14607 -19.95328 -18.47011 -17.82049 -16.98988 -16.74110 -16.26270 -15.80634 -15.16555 -14.88839 -14.69142 -14.34218 -14.23248 -13.99075 -13.84205 -13.77868 -13.29578 -13.01319 -12.62018 -12.55518 -12.11329 -11.96990 -11.85808 -11.31592 -11.01262 -10.92807 -10.78253 -10.48733 -10.43233 -10.17326 -10.01207 -9.89658 -9.72372 -9.68252 -9.32656 -8.81761 -8.58391 -8.32957 -6.87187 -5.76612 -3.09306 0.00180 0.47758 1.62428 2.41906 3.28056 3.36220 3.37541 3.42832 3.44261 3.88703 4.13669 4.27880 4.46040 4.47376 4.52406 4.69103 4.79066 4.94558 4.99727 5.24112 5.32983 5.39993 5.43264 5.44158 5.50189 5.69249 5.71584 5.77648 5.81062 6.05922 6.07717 6.15338 6.30530 6.34919 6.43217 6.43902 6.50237 6.63864 6.95347 7.47845 7.50553 7.68840 7.73438 7.76344 8.19785 8.36763 9.17497 9.77240 10.42665 11.35277 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.016399 B = 0.003310 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.027327 B = 8457.099962 C = 9384.122051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.175 3.825 11 C -0.154 4.154 12 C 0.127 3.873 13 H 0.092 0.908 14 N -0.695 5.695 15 C 0.553 3.447 16 O -0.544 6.544 17 C -0.104 4.104 18 C -0.090 4.090 19 C -0.091 4.091 20 C -0.098 4.098 21 C 0.144 3.856 22 N -0.487 5.487 23 C 0.069 3.931 24 C -0.144 4.144 25 C -0.035 4.035 26 C -0.048 4.048 27 C 0.125 3.875 28 H 0.252 0.748 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.403 0.597 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.165 0.835 37 H 0.154 0.846 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.029 0.971 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.362 -12.421 -13.694 18.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.050 3.950 11 C -0.193 4.193 12 C 0.021 3.979 13 H 0.110 0.890 14 N -0.344 5.344 15 C 0.340 3.660 16 O -0.423 6.423 17 C -0.108 4.108 18 C -0.108 4.108 19 C -0.111 4.111 20 C -0.101 4.101 21 C -0.028 4.028 22 N -0.194 5.194 23 C -0.074 4.074 24 C -0.164 4.164 25 C -0.040 4.040 26 C -0.067 4.067 27 C -0.002 4.002 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.239 0.761 34 H 0.153 0.847 35 H 0.158 0.842 36 H 0.182 0.818 37 H 0.171 0.829 38 H 0.158 0.842 39 H 0.164 0.836 40 H 0.047 0.953 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.148 -12.859 -14.158 19.126 hybrid contribution 0.217 1.320 0.809 1.563 sum 0.365 -11.539 -13.349 17.648 Atomic orbital electron populations 1.69944 1.04809 1.25011 1.57378 1.24768 0.95728 0.97580 1.02334 0.86127 0.78645 0.83503 0.77556 1.21648 1.21677 1.20729 1.19058 0.90444 0.82367 1.43482 0.90550 1.44484 1.01456 0.99874 1.87270 1.21184 0.84579 0.87893 1.01308 1.23240 0.95613 1.00070 1.00372 1.22205 0.97621 0.99655 0.78394 0.88972 1.45783 1.47870 1.33264 1.07529 1.18179 0.79753 0.81624 0.86447 1.90749 1.42790 1.36598 1.72172 1.20136 0.99526 0.97467 0.93708 1.21097 0.97687 0.96949 0.95082 1.20900 0.98398 0.98217 0.93551 1.19165 0.98639 0.96772 0.95482 1.23257 0.94407 0.95692 0.89435 1.67382 1.06587 1.03800 1.41671 1.22174 0.96730 0.95767 0.92681 1.21991 0.99739 0.99662 0.94991 1.18139 0.96756 0.95407 0.93680 1.21412 0.96160 0.97522 0.91597 1.21947 0.94744 0.86364 0.97179 0.93788 0.93610 0.93670 0.91542 0.90787 0.76096 0.84710 0.84193 0.81758 0.82919 0.84165 0.83609 0.95297 0.93918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.06 10.31 55.49 0.57 -25.49 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.14 10.28 -15.06 -0.15 -6.30 16 8 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 9 N -0.60 -14.80 3.39 -170.07 -0.58 -15.37 16 10 C 0.18 3.94 5.36 -3.06 -0.02 3.93 16 11 C -0.15 -2.62 6.55 -24.90 -0.16 -2.79 16 12 C 0.13 2.20 3.43 -65.78 -0.23 1.97 16 13 H 0.09 1.55 7.54 -51.93 -0.39 1.15 16 14 N -0.69 -11.11 5.14 -52.66 -0.27 -11.38 16 15 C 0.55 8.92 7.77 -12.31 -0.10 8.82 16 16 O -0.54 -10.22 15.94 5.32 0.08 -10.13 16 17 C -0.10 -1.40 5.87 -104.95 -0.62 -2.01 16 18 C -0.09 -1.03 9.44 -39.54 -0.37 -1.40 16 19 C -0.09 -0.90 9.77 -39.59 -0.39 -1.28 16 20 C -0.10 -1.05 5.75 -106.78 -0.61 -1.67 16 21 C 0.14 1.39 11.04 -16.97 -0.19 1.20 16 22 N -0.49 -5.28 10.29 -13.15 -0.14 -5.42 16 23 C 0.07 0.65 11.07 -17.97 -0.20 0.46 16 24 C -0.14 -1.37 9.88 -39.35 -0.39 -1.76 16 25 C -0.03 -0.39 5.74 -106.83 -0.61 -1.01 16 26 C -0.05 -0.59 9.38 -38.78 -0.36 -0.96 16 27 C 0.12 2.60 6.93 -2.53 -0.02 2.58 16 28 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.05 1.11 7.38 -51.93 -0.38 0.73 16 30 H 0.05 1.15 7.51 -51.93 -0.39 0.76 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.40 6.02 6.65 -40.82 -0.27 5.75 16 34 H 0.14 1.42 6.34 -52.49 -0.33 1.08 16 35 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.15 1.74 7.62 -52.49 -0.40 1.34 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 343.66 15.07 5.18 5.18 Total: -1.00 -32.49 343.66 -9.78 -42.26 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.10 Total: 4.14 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -4.51 Total: -0.53 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.41 Total: -57.66 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.49 -9.78 -42.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015955941.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.922 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds